Wall clock time and date at job start Mon Mar 30 2020 03:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27955 * 119.99842 * 2 1 4 4 O 1.41609 * 120.00085 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99852 * 179.97438 * 2 1 3 6 6 H 1.08994 * 109.47381 * 34.99986 * 5 2 1 7 7 N 1.46505 * 109.46927 * 154.99939 * 5 2 1 8 8 C 1.36931 * 119.99788 * 274.99864 * 7 5 2 9 9 H 1.08002 * 120.00438 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99680 * 179.72358 * 8 7 5 11 11 N 1.31614 * 119.99888 * 0.27479 * 10 8 7 12 12 Si 1.86803 * 119.99862 * 180.27671 * 10 8 7 13 13 H 1.48496 * 109.47141 * 59.99751 * 12 10 8 14 14 H 1.48490 * 109.47071 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46993 * 300.00028 * 12 10 8 16 16 C 1.50696 * 109.47100 * 274.99635 * 5 2 1 17 17 C 1.38239 * 120.00166 * 279.72920 * 16 5 2 18 18 C 1.38230 * 119.99916 * 179.80839 * 17 16 5 19 19 C 1.38242 * 120.00219 * 0.39890 * 18 17 16 20 20 C 1.38230 * 119.99751 * 359.85264 * 19 18 17 21 21 C 1.38233 * 120.00076 * 359.95869 * 20 19 18 22 22 H 1.09002 * 109.47222 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47087 * 300.00183 * 1 2 3 24 24 H 1.08998 * 109.47210 * 60.00036 * 1 2 3 25 25 H 0.96699 * 113.99574 * 180.02562 * 4 3 2 26 26 H 0.97000 * 119.99792 * 94.99659 * 7 5 2 27 27 H 0.97005 * 119.99715 * 179.97438 * 11 10 8 28 28 H 1.07992 * 119.99886 * 0.02562 * 17 16 5 29 29 H 1.08008 * 120.00483 * 180.22962 * 18 17 16 30 30 H 1.07999 * 120.00194 * 179.83360 * 19 18 17 31 31 H 1.08002 * 120.00370 * 179.97438 * 20 19 18 32 32 H 1.08007 * 120.00117 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1468 1.1081 0.0000 4 8 1.4387 2.3345 -0.0005 5 6 2.2605 -1.3051 0.0006 6 1 1.7132 -2.0409 -0.5885 7 7 3.5888 -1.1024 -0.5833 8 6 3.7554 -1.1577 -1.9413 9 1 2.9076 -1.3505 -2.5820 10 6 5.0130 -0.9599 -2.4948 11 7 6.0460 -0.7245 -1.7141 12 14 5.2390 -1.0278 -4.3479 13 1 4.3972 0.0149 -4.9877 14 1 6.6656 -0.7867 -4.6817 15 1 4.8336 -2.3663 -4.8473 16 6 2.4045 -1.8014 1.4162 17 6 3.3881 -1.2790 2.2351 18 6 3.5175 -1.7314 3.5348 19 6 2.6688 -2.7121 4.0132 20 6 1.6886 -3.2382 3.1927 21 6 1.5566 -2.7830 1.8941 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 2.0071 3.1168 -0.0009 26 1 4.3501 -0.9289 -0.0078 27 1 6.9249 -0.5867 -2.1009 28 1 4.0530 -0.5149 1.8605 29 1 4.2836 -1.3206 4.1759 30 1 2.7717 -3.0675 5.0278 31 1 1.0257 -4.0047 3.5662 32 1 0.7910 -3.1943 1.2529 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221089258.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:31 Heat of formation + Delta-G solvation = 46.112864 kcal Electronic energy + Delta-G solvation = -16178.463952 eV Core-core repulsion = 13527.176733 eV Total energy + Delta-G solvation = -2651.287219 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.13534 -36.91906 -35.06812 -32.92888 -31.37212 -30.58779 -29.63236 -27.67734 -25.65850 -23.15484 -22.01418 -21.20588 -18.67232 -17.48937 -16.27059 -16.17511 -15.23673 -14.90233 -14.55334 -14.10182 -13.82238 -13.37491 -13.29250 -13.00994 -12.70924 -12.35561 -12.02260 -11.77917 -11.72636 -11.02671 -10.85030 -10.71608 -10.61803 -10.15898 -9.78449 -9.18523 -8.98877 -8.80039 -8.55487 -8.33145 -7.05995 -5.79172 -3.08560 1.68629 1.77283 2.85073 3.43307 3.47837 3.48566 3.80032 4.21280 4.55615 5.08587 5.22433 5.27779 5.35531 5.50104 5.64430 5.68746 5.79481 5.86826 5.89872 6.11366 6.12112 6.20200 6.34051 6.46582 6.62839 6.78505 6.87095 7.08230 7.35850 7.46416 7.66398 8.35815 8.53343 9.49961 10.00904 10.37527 11.42682 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.021094 B = 0.008631 C = 0.007168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.052217 B = 3243.257395 C = 3905.056603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.101 3.899 3 N -0.295 5.295 4 O -0.442 6.442 5 C 0.266 3.734 6 H 0.083 0.917 7 N -0.700 5.700 8 C -0.244 4.244 9 H 0.070 0.930 10 C -0.005 4.005 11 N -0.926 5.926 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.290 1.290 15 H -0.285 1.285 16 C -0.068 4.068 17 C -0.095 4.095 18 C -0.123 4.123 19 C -0.130 4.130 20 C -0.126 4.126 21 C -0.114 4.114 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.394 0.606 26 H 0.390 0.610 27 H 0.257 0.743 28 H 0.128 0.872 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.103 -1.917 8.890 12.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.097 4.097 3 N -0.039 5.039 4 O -0.344 6.344 5 C 0.153 3.847 6 H 0.100 0.900 7 N -0.339 5.339 8 C -0.374 4.374 9 H 0.088 0.912 10 C -0.202 4.202 11 N -0.573 5.573 12 Si 0.738 3.262 13 H -0.213 1.213 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.070 4.070 17 C -0.113 4.113 18 C -0.141 4.141 19 C -0.148 4.148 20 C -0.145 4.145 21 C -0.132 4.132 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.240 0.760 26 H 0.226 0.774 27 H 0.066 0.934 28 H 0.146 0.854 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.694 -1.847 8.664 12.412 hybrid contribution -0.017 0.523 -0.920 1.059 sum -8.711 -1.324 7.743 11.730 Atomic orbital electron populations 1.21205 0.93666 1.02626 1.02426 1.26814 0.94254 0.95543 0.93069 1.76557 1.22575 0.90933 1.13874 1.88329 1.35902 1.14416 1.95797 1.18072 0.88610 0.88575 0.89467 0.89988 1.42393 1.02636 1.83990 1.04878 1.19142 0.93779 1.41739 0.82787 0.91198 1.24726 0.95670 1.02032 0.97752 1.69655 0.99353 1.54538 1.33751 0.86269 0.76754 0.77816 0.85319 1.21298 1.21625 1.21139 1.20058 0.95440 0.95993 0.95529 1.21114 0.97455 0.99551 0.93179 1.21118 0.99375 0.97706 0.95896 1.21046 0.96506 0.97827 0.99465 1.21007 0.98874 1.00348 0.94227 1.20996 0.99284 0.97169 0.95773 0.91397 0.91429 0.91291 0.75977 0.77404 0.93356 0.85428 0.86444 0.86737 0.86539 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.40 36.01 0.34 -1.88 16 2 C 0.10 2.00 6.27 -78.93 -0.49 1.51 16 3 N -0.29 -6.36 11.51 35.58 0.41 -5.95 16 4 O -0.44 -8.26 14.16 -11.47 -0.16 -8.42 16 5 C 0.27 5.36 2.73 -70.23 -0.19 5.17 16 6 H 0.08 1.57 7.94 -51.93 -0.41 1.16 16 7 N -0.70 -17.44 4.63 -55.69 -0.26 -17.69 16 8 C -0.24 -6.71 9.92 -15.06 -0.15 -6.86 16 9 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 10 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 11 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 12 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 16 C -0.07 -1.22 4.94 -104.62 -0.52 -1.73 16 17 C -0.09 -1.70 9.06 -39.58 -0.36 -2.06 16 18 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 19 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 20 C -0.13 -1.68 10.05 -39.59 -0.40 -2.08 16 21 C -0.11 -1.69 9.67 -39.58 -0.38 -2.07 16 22 H 0.07 0.89 8.00 -51.93 -0.42 0.48 16 23 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.39 5.71 9.28 45.56 0.42 6.13 16 26 H 0.39 10.35 6.05 -40.82 -0.25 10.11 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.13 2.53 6.90 -52.49 -0.36 2.16 16 29 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 30 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.12 1.51 8.04 -52.48 -0.42 1.09 16 LS Contribution 284.66 15.07 4.29 4.29 Total: -1.00 -32.13 284.66 -6.16 -38.29 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -3.10 Total: 13.76 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -3.04 Total: -14.64 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.88 Total: -50.68 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.16 Total: -8.42 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.13 -6.16 -38.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221089258.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.398 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds