Wall clock time and date at job start Mon Mar 30 2020 03:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46567 * 2 1 4 4 N 1.46500 * 109.46866 * 240.00301 * 2 1 3 5 5 C 1.34781 * 119.99705 * 84.99746 * 4 2 1 6 6 O 1.21686 * 120.00227 * 0.02562 * 5 4 2 7 7 C 1.46376 * 119.99290 * 179.97438 * 5 4 2 8 8 H 1.07993 * 120.00584 * 353.94470 * 7 5 4 9 9 C 1.40056 * 119.99588 * 173.93845 * 7 5 4 10 10 N 1.30671 * 119.99747 * 6.15657 * 9 7 5 11 11 Si 1.86797 * 119.99942 * 186.14977 * 9 7 5 12 12 H 1.48504 * 109.46834 * 94.99012 * 11 9 7 13 13 H 1.48507 * 109.46948 * 214.98770 * 11 9 7 14 14 H 1.48492 * 109.47396 * 334.98782 * 11 9 7 15 15 C 1.50695 * 109.47142 * 120.00456 * 2 1 3 16 16 C 1.38279 * 119.92833 * 80.27541 * 15 2 1 17 17 C 1.38108 * 120.07363 * 180.27668 * 16 15 2 18 18 C 1.38904 * 119.92572 * 359.44410 * 17 16 15 19 19 N 1.39676 * 120.07588 * 180.25376 * 18 17 16 20 20 C 1.38917 * 119.85059 * 0.28144 * 18 17 16 21 21 C 1.38096 * 119.92377 * 359.97438 * 20 18 17 22 22 H 1.08996 * 109.47381 * 59.99561 * 1 2 3 23 23 H 1.08997 * 109.47025 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47052 * 299.99684 * 1 2 3 25 25 H 0.96998 * 119.99998 * 264.99677 * 4 2 1 26 26 H 0.96998 * 119.99749 * 179.97438 * 10 9 7 27 27 H 1.08002 * 119.96564 * 0.02562 * 16 15 2 28 28 H 1.07999 * 120.03480 * 179.72180 * 17 16 15 29 29 H 0.97000 * 119.99809 * 0.02562 * 19 18 17 30 30 H 0.97007 * 119.99981 * 180.02562 * 19 18 17 31 31 H 1.07998 * 120.03722 * 180.02562 * 20 18 17 32 32 H 1.08004 * 119.96370 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0181 -2.3572 6 8 1.8580 1.1627 -2.4116 7 6 2.6353 -0.7080 -3.5522 8 1 2.9848 -1.7274 -3.4823 9 6 2.6493 -0.0460 -4.7863 10 7 2.3411 1.2222 -4.8510 11 14 3.1087 -0.9759 -6.3399 12 1 1.8748 -1.4566 -7.0122 13 1 3.8518 -0.0734 -7.2556 14 1 3.9645 -2.1370 -5.9870 15 6 2.0324 -0.7105 1.2304 16 6 2.0715 -2.0924 1.2614 17 6 2.5259 -2.7467 2.3895 18 6 2.9548 -2.0149 3.4895 19 7 3.4200 -2.6734 4.6301 20 6 2.9195 -0.6267 3.4529 21 6 2.4590 0.0212 2.3236 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 2.2490 -1.6317 -1.1527 26 1 2.3511 1.6808 -5.7056 27 1 1.7425 -2.6607 0.4040 28 1 2.5520 -3.8261 2.4148 29 1 3.4442 -3.6428 4.6545 30 1 3.7189 -2.1612 5.3978 31 1 3.2527 -0.0547 4.3063 32 1 2.4317 1.1004 2.2943 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225285663.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:32 Heat of formation + Delta-G solvation = -48.326542 kcal Electronic energy + Delta-G solvation = -15786.467093 eV Core-core repulsion = 13131.084674 eV Total energy + Delta-G solvation = -2655.382419 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.63499 -39.22077 -36.62558 -34.72787 -34.17065 -31.84725 -31.41540 -28.69405 -28.15539 -24.31314 -23.80394 -22.17686 -20.90032 -19.39941 -17.97574 -17.70242 -17.33343 -16.67212 -16.04736 -15.57773 -15.10260 -14.75368 -14.65850 -14.19604 -14.14014 -14.11650 -13.64532 -13.32178 -13.06118 -12.73411 -12.58401 -12.51969 -12.02165 -11.85757 -11.66340 -11.29123 -10.90971 -9.82763 -9.78033 -9.42774 -8.33349 -8.23507 -6.82331 0.57900 0.69139 1.41026 1.42566 1.58288 2.26743 2.50688 2.95833 3.08879 3.24913 3.66269 3.92684 4.02799 4.19600 4.41866 4.54230 4.61842 4.72548 4.85427 4.97404 5.04864 5.21234 5.28838 5.34525 5.43989 5.56689 5.83664 5.93736 6.00881 6.27761 6.37903 6.66772 6.89507 7.08730 7.60279 8.53518 8.70983 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.041483 B = 0.005463 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.807786 B = 5124.185489 C = 5483.348023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.195 3.805 3 H 0.044 0.956 4 N -0.747 5.747 5 C 0.540 3.460 6 O -0.631 6.631 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.029 3.971 10 N -0.822 5.822 11 Si 0.998 3.002 12 H -0.263 1.263 13 H -0.273 1.273 14 H -0.249 1.249 15 C -0.153 4.153 16 C -0.070 4.070 17 C -0.199 4.199 18 C 0.211 3.789 19 N -0.867 5.867 20 C -0.200 4.200 21 C -0.075 4.075 22 H 0.025 0.975 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.391 0.609 26 H 0.274 0.726 27 H 0.122 0.878 28 H 0.141 0.859 29 H 0.407 0.593 30 H 0.406 0.594 31 H 0.140 0.860 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.419 -10.226 16.025 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.090 3.910 3 H 0.063 0.937 4 N -0.402 5.402 5 C 0.344 3.656 6 O -0.518 6.518 7 C -0.613 4.613 8 H 0.104 0.896 9 C -0.185 4.185 10 N -0.452 5.452 11 Si 0.817 3.183 12 H -0.187 1.187 13 H -0.197 1.197 14 H -0.172 1.172 15 C -0.156 4.156 16 C -0.089 4.089 17 C -0.222 4.222 18 C 0.105 3.895 19 N -0.408 5.408 20 C -0.222 4.222 21 C -0.094 4.094 22 H 0.044 0.956 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.226 0.774 26 H 0.084 0.916 27 H 0.140 0.860 28 H 0.159 0.841 29 H 0.236 0.764 30 H 0.236 0.764 31 H 0.158 0.842 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.179 -9.200 15.898 18.406 hybrid contribution 0.240 -0.380 -0.561 0.719 sum 1.419 -9.580 15.337 18.139 Atomic orbital electron populations 1.22037 0.95411 1.01824 1.00721 1.19307 0.93523 0.94966 0.83231 0.93746 1.45984 1.71954 1.13215 1.09011 1.18589 0.77655 0.86024 0.83360 1.90538 1.57324 1.18383 1.85602 1.21437 1.46015 1.01107 0.92729 0.89643 1.26966 0.92178 0.95210 1.04187 1.70199 1.36518 1.11300 1.27174 0.85009 0.79122 0.78569 0.75571 1.18742 1.19742 1.17192 1.19688 1.05871 0.94519 0.95497 1.20782 0.97100 0.93221 0.97846 1.20740 1.07766 1.00296 0.93357 1.17873 0.92022 0.91630 0.87994 1.42387 1.73471 1.09687 1.15216 1.20719 1.08782 0.92842 0.99902 1.20885 0.96184 0.99826 0.92519 0.95596 0.91805 0.90754 0.77427 0.91628 0.85990 0.84120 0.76370 0.76400 0.84184 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 9.46 71.98 0.68 -4.74 16 2 C 0.20 8.16 2.78 44.25 0.12 8.28 16 3 H 0.04 2.14 7.43 -2.39 -0.02 2.12 16 4 N -0.75 -35.50 5.02 -450.40 -2.26 -37.76 16 5 C 0.54 32.47 7.71 86.36 0.67 33.13 16 6 O -0.63 -43.53 14.71 -4.30 -0.06 -43.59 16 7 C -0.58 -33.67 9.54 24.83 0.24 -33.43 16 8 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 9 C 0.03 1.68 5.49 85.31 0.47 2.15 16 10 N -0.82 -51.52 11.85 21.84 0.26 -51.26 16 11 Si 1.00 41.84 29.56 68.60 2.03 43.87 16 12 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 13 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 14 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 15 C -0.15 -5.10 4.96 -19.84 -0.10 -5.20 16 16 C -0.07 -2.04 9.05 22.25 0.20 -1.84 16 17 C -0.20 -4.65 9.90 22.40 0.22 -4.43 16 18 C 0.21 4.52 6.75 38.21 0.26 4.78 16 19 N -0.87 -11.53 9.09 -51.37 -0.47 -12.00 16 20 C -0.20 -4.71 9.90 22.40 0.22 -4.49 16 21 C -0.07 -2.20 9.66 22.25 0.21 -1.98 16 22 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.39 16.29 6.83 -92.71 -0.63 15.66 16 26 H 0.27 15.50 8.29 -92.71 -0.77 14.73 16 27 H 0.12 3.41 6.89 -2.91 -0.02 3.39 16 28 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 29 H 0.41 3.85 8.84 -92.71 -0.82 3.03 16 30 H 0.41 3.85 8.84 -92.70 -0.82 3.03 16 31 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.12 3.41 8.03 -2.91 -0.02 3.39 16 Total: -1.00 -78.59 280.30 1.58 -77.01 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -1.11 Total: 31.50 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 3.19 Total: -7.77 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -2.47 Total: -101.02 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -0.06 Total: -43.59 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -78.59 1.58 -77.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225285663.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.679 kcal (2) G-P(sol) polarization free energy of solvation -78.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds