Wall clock time and date at job start Mon Mar 30 2020 03:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46592 * 2 1 4 4 C 1.50700 * 109.47318 * 240.00437 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99541 * 4 2 1 6 6 C 1.37885 * 120.00047 * 59.99721 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47021 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47081 * 119.99727 * 8 6 4 11 11 H 1.48501 * 109.47213 * 240.00099 * 8 6 4 12 12 N 1.46497 * 109.47495 * 120.00082 * 2 1 3 13 13 C 1.39705 * 119.99945 * 275.00528 * 12 2 1 14 14 C 1.39026 * 120.00629 * 359.97438 * 13 12 2 15 15 C 1.38203 * 120.21890 * 180.02562 * 14 13 12 16 16 C 1.38020 * 120.23170 * 359.97438 * 15 14 13 17 17 C 1.39576 * 120.00451 * 0.03958 * 16 15 14 18 18 C 1.47860 * 120.11239 * 179.97438 * 17 16 15 19 19 N 1.34781 * 120.00042 * 0.02562 * 18 17 16 20 20 O 1.21548 * 120.00208 * 179.97438 * 18 17 16 21 21 C 1.38637 * 120.00572 * 179.72371 * 13 12 2 22 22 H 1.09002 * 109.46768 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46948 * 299.99657 * 1 2 3 24 24 H 1.08996 * 109.46989 * 60.00145 * 1 2 3 25 25 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 26 26 H 0.97000 * 120.00091 * 95.00023 * 12 2 1 27 27 H 1.07997 * 119.89084 * 0.03471 * 14 13 12 28 28 H 1.08005 * 119.88468 * 180.02562 * 15 14 13 29 29 H 1.08001 * 120.00085 * 180.02562 * 16 15 14 30 30 H 0.97005 * 119.99506 * 359.97438 * 19 18 17 31 31 H 0.96994 * 120.00132 * 179.97438 * 19 18 17 32 32 H 1.08006 * 120.11037 * 359.97438 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9386 0.8269 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 3.1466 -2.2867 -3.6039 10 1 1.1661 -1.5864 -4.8161 11 1 3.1467 -0.1870 -4.8165 12 7 2.0184 -0.6906 1.1961 13 6 2.1518 0.0063 2.3995 14 6 1.8215 1.3553 2.4620 15 6 1.9523 2.0491 3.6501 16 6 2.4110 1.4075 4.7827 17 6 2.7456 0.0534 4.7306 18 6 3.2378 -0.6362 5.9424 19 7 3.3636 0.0426 7.1000 20 8 3.5282 -1.8155 5.8949 21 6 2.6085 -0.6485 3.5330 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7046 1.1585 -3.4844 26 1 2.2492 -1.6317 1.1525 27 1 1.4615 1.8627 1.5793 28 1 1.6938 3.0969 3.6927 29 1 2.5114 1.9532 5.7093 30 1 3.1316 0.9838 7.1379 31 1 3.6862 -0.4098 7.8950 32 1 2.8614 -1.6975 3.4877 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226366639.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:19 Heat of formation + Delta-G solvation = -19.380088 kcal Electronic energy + Delta-G solvation = -15730.756247 eV Core-core repulsion = 13076.629040 eV Total energy + Delta-G solvation = -2654.127206 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.80934 -38.22167 -35.55935 -33.73913 -32.71464 -30.68216 -29.82618 -27.26583 -25.28280 -23.87087 -21.80676 -21.10379 -19.51831 -17.95109 -17.26693 -16.35293 -15.63154 -15.26697 -15.07816 -14.58566 -14.20953 -13.70988 -13.31514 -13.19309 -12.73624 -12.50383 -11.76788 -11.45645 -11.13652 -11.06984 -10.87342 -10.71569 -10.33158 -10.24325 -9.85896 -9.70621 -9.47932 -9.07710 -8.57276 -8.53618 -6.66094 -6.20140 -4.28041 1.27418 2.01022 3.18575 3.20503 3.28824 3.32570 3.57221 4.22494 4.37055 4.50680 5.00414 5.12926 5.26005 5.41748 5.76076 5.94807 6.08121 6.26983 6.62696 6.63946 6.76384 6.82979 6.87328 6.91280 7.00226 7.16677 7.38640 7.42195 7.62993 7.79648 8.01823 8.28919 8.32536 8.63932 8.85456 9.39470 10.85814 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.045701 B = 0.005314 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.533944 B = 5268.326265 C = 5658.391953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.265 3.735 3 H 0.041 0.959 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.722 5.722 13 C 0.231 3.769 14 C -0.177 4.177 15 C -0.079 4.079 16 C -0.173 4.173 17 C -0.097 4.097 18 C 0.566 3.434 19 N -0.855 5.855 20 O -0.546 6.546 21 C -0.155 4.155 22 H 0.029 0.971 23 H 0.013 0.987 24 H 0.090 0.910 25 H 0.264 0.736 26 H 0.392 0.608 27 H 0.131 0.869 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.401 0.599 31 H 0.400 0.600 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.525 3.182 13.297 13.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.059 0.941 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.343 5.343 13 C 0.120 3.880 14 C -0.200 4.200 15 C -0.097 4.097 16 C -0.195 4.195 17 C -0.101 4.101 18 C 0.353 3.647 19 N -0.419 5.419 20 O -0.424 6.424 21 C -0.180 4.180 22 H 0.048 0.952 23 H 0.032 0.968 24 H 0.109 0.891 25 H 0.074 0.926 26 H 0.225 0.775 27 H 0.149 0.851 28 H 0.138 0.862 29 H 0.130 0.870 30 H 0.231 0.769 31 H 0.230 0.770 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.492 2.631 12.693 13.048 hybrid contribution 0.354 -0.418 -0.532 0.763 sum 1.846 2.213 12.161 12.498 Atomic orbital electron populations 1.22192 0.98694 0.99685 1.00623 1.18768 0.90754 0.93457 0.80710 0.94140 1.21250 1.32115 1.13272 0.90216 0.92000 1.24872 0.94728 0.94982 0.99090 1.69881 1.35898 1.22815 1.23869 0.86380 0.78639 0.79620 0.82432 1.19706 1.20835 1.20831 1.45652 1.69034 1.12246 1.07414 1.17955 0.91616 0.91637 0.86747 1.21032 1.06588 0.93345 0.99078 1.20740 0.97711 0.99143 0.92151 1.20718 1.06695 0.93523 0.98555 1.19381 1.03507 0.94203 0.93007 1.18502 0.76424 0.86123 0.83661 1.43767 1.70736 1.15162 1.12194 1.90780 1.50271 1.15956 1.85435 1.20611 1.06072 1.00258 0.91034 0.95161 0.96761 0.89103 0.92610 0.77452 0.85114 0.86227 0.86986 0.76922 0.76996 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.20 37.16 0.34 -3.23 16 2 C 0.27 6.33 2.25 -69.08 -0.16 6.18 16 3 H 0.04 1.04 6.48 -51.93 -0.34 0.71 16 4 C -0.53 -13.83 8.73 -34.44 -0.30 -14.13 16 5 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 6 C 0.07 1.74 5.31 -17.82 -0.09 1.64 16 7 N -0.89 -23.97 11.31 55.43 0.63 -23.34 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.72 -15.02 5.24 -53.32 -0.28 -15.30 16 13 C 0.23 4.39 6.63 -83.83 -0.56 3.83 16 14 C -0.18 -3.15 8.84 -39.30 -0.35 -3.50 16 15 C -0.08 -1.14 10.02 -39.67 -0.40 -1.54 16 16 C -0.17 -2.31 9.54 -39.16 -0.37 -2.69 16 17 C -0.10 -1.52 5.87 -104.99 -0.62 -2.14 16 18 C 0.57 8.43 8.05 -12.32 -0.10 8.33 16 19 N -0.85 -8.25 8.82 30.53 0.27 -7.98 16 20 O -0.55 -10.21 17.18 5.32 0.09 -10.12 16 21 C -0.16 -2.77 9.44 -38.97 -0.37 -3.14 16 22 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.01 0.29 7.70 -51.93 -0.40 -0.11 16 24 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 25 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 26 H 0.39 7.78 8.55 -40.82 -0.35 7.43 16 27 H 0.13 2.47 6.09 -52.49 -0.32 2.15 16 28 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 29 H 0.11 1.06 6.40 -52.49 -0.34 0.72 16 30 H 0.40 2.76 6.86 -40.82 -0.28 2.48 16 31 H 0.40 3.14 8.93 -40.82 -0.36 2.78 16 32 H 0.13 2.28 7.65 -52.48 -0.40 1.88 16 LS Contribution 274.25 15.07 4.13 4.13 Total: -1.00 -29.70 274.25 -6.63 -36.33 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -3.49 Total: 11.18 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -2.97 Total: -10.37 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.62 Total: -46.61 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.70 -6.63 -36.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226366639.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.950 kcal (2) G-P(sol) polarization free energy of solvation -29.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds