Wall clock time and date at job start Mon Mar 30 2020 03:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46592 * 2 1 4 4 C 1.50700 * 109.47318 * 240.00437 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99541 * 4 2 1 6 6 C 1.37885 * 120.00047 * 59.99721 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47021 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47081 * 119.99727 * 8 6 4 11 11 H 1.48501 * 109.47213 * 240.00099 * 8 6 4 12 12 N 1.46497 * 109.47495 * 120.00082 * 2 1 3 13 13 C 1.39705 * 119.99945 * 275.00528 * 12 2 1 14 14 C 1.39026 * 120.00629 * 359.97438 * 13 12 2 15 15 C 1.38203 * 120.21890 * 180.02562 * 14 13 12 16 16 C 1.38020 * 120.23170 * 359.97438 * 15 14 13 17 17 C 1.39576 * 120.00451 * 0.03958 * 16 15 14 18 18 C 1.47860 * 120.11239 * 179.97438 * 17 16 15 19 19 N 1.34781 * 120.00042 * 0.02562 * 18 17 16 20 20 O 1.21548 * 120.00208 * 179.97438 * 18 17 16 21 21 C 1.38637 * 120.00572 * 179.72371 * 13 12 2 22 22 H 1.09002 * 109.46768 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46948 * 299.99657 * 1 2 3 24 24 H 1.08996 * 109.46989 * 60.00145 * 1 2 3 25 25 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 26 26 H 0.97000 * 120.00091 * 95.00023 * 12 2 1 27 27 H 1.07997 * 119.89084 * 0.03471 * 14 13 12 28 28 H 1.08005 * 119.88468 * 180.02562 * 15 14 13 29 29 H 1.08001 * 120.00085 * 180.02562 * 16 15 14 30 30 H 0.97005 * 119.99506 * 359.97438 * 19 18 17 31 31 H 0.96994 * 120.00132 * 179.97438 * 19 18 17 32 32 H 1.08006 * 120.11037 * 359.97438 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9386 0.8269 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 3.1466 -2.2867 -3.6039 10 1 1.1661 -1.5864 -4.8161 11 1 3.1467 -0.1870 -4.8165 12 7 2.0184 -0.6906 1.1961 13 6 2.1518 0.0063 2.3995 14 6 1.8215 1.3553 2.4620 15 6 1.9523 2.0491 3.6501 16 6 2.4110 1.4075 4.7827 17 6 2.7456 0.0534 4.7306 18 6 3.2378 -0.6362 5.9424 19 7 3.3636 0.0426 7.1000 20 8 3.5282 -1.8155 5.8949 21 6 2.6085 -0.6485 3.5330 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7046 1.1585 -3.4844 26 1 2.2492 -1.6317 1.1525 27 1 1.4615 1.8627 1.5793 28 1 1.6938 3.0969 3.6927 29 1 2.5114 1.9532 5.7093 30 1 3.1316 0.9838 7.1379 31 1 3.6862 -0.4098 7.8950 32 1 2.8614 -1.6975 3.4877 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226366639.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:19 Heat of formation + Delta-G solvation = -40.960922 kcal Electronic energy + Delta-G solvation = -15731.692062 eV Core-core repulsion = 13076.629040 eV Total energy + Delta-G solvation = -2655.063021 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.04160 -39.55822 -37.17115 -34.98797 -34.35266 -32.04506 -31.40665 -28.80771 -27.27323 -25.15323 -23.17848 -22.66569 -20.87826 -19.23555 -18.74389 -17.74385 -16.99737 -16.89612 -16.59405 -15.82062 -15.77181 -15.03455 -14.80127 -14.46843 -14.31718 -14.22229 -13.51923 -13.00440 -12.87463 -12.84443 -12.45342 -12.26118 -12.13234 -12.01959 -11.13662 -11.10874 -10.91307 -10.69024 -10.50666 -9.83850 -8.24323 -8.12164 -6.34645 -0.00157 0.75117 1.40280 1.42761 1.53575 1.96871 2.35687 2.54206 2.95560 3.07460 3.11560 3.94542 4.07370 4.30552 4.42185 4.65885 4.71257 4.77829 4.98737 5.03333 5.11233 5.39504 5.42713 5.48804 5.59894 5.66324 5.82677 5.90650 6.03393 6.10657 6.47536 6.52864 6.83002 7.14248 7.33566 7.37480 8.85381 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.045701 B = 0.005314 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.533944 B = 5268.326265 C = 5658.391953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.276 3.724 3 H 0.017 0.983 4 C -0.550 4.550 5 H 0.057 0.943 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.964 3.036 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.278 1.278 12 N -0.734 5.734 13 C 0.205 3.795 14 C -0.194 4.194 15 C -0.072 4.072 16 C -0.146 4.146 17 C -0.105 4.105 18 C 0.564 3.436 19 N -0.824 5.824 20 O -0.593 6.593 21 C -0.169 4.169 22 H 0.025 0.975 23 H 0.027 0.973 24 H 0.069 0.931 25 H 0.266 0.734 26 H 0.392 0.608 27 H 0.112 0.888 28 H 0.157 0.843 29 H 0.165 0.835 30 H 0.419 0.581 31 H 0.413 0.587 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.885 4.424 15.284 16.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.172 3.828 3 H 0.034 0.966 4 C -0.588 4.588 5 H 0.075 0.925 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.789 3.211 9 H -0.195 1.195 10 H -0.203 1.203 11 H -0.204 1.204 12 N -0.358 5.358 13 C 0.099 3.901 14 C -0.217 4.217 15 C -0.090 4.090 16 C -0.167 4.167 17 C -0.108 4.108 18 C 0.351 3.649 19 N -0.388 5.388 20 O -0.474 6.474 21 C -0.194 4.194 22 H 0.044 0.956 23 H 0.046 0.954 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.225 0.775 27 H 0.130 0.870 28 H 0.174 0.826 29 H 0.182 0.818 30 H 0.252 0.748 31 H 0.245 0.755 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.857 3.928 14.762 15.388 hybrid contribution 0.260 -0.697 -0.964 1.217 sum 2.117 3.232 13.798 14.329 Atomic orbital electron populations 1.22004 0.98559 0.99123 1.00108 1.18400 0.90753 0.92185 0.81427 0.96565 1.21562 1.32297 1.13386 0.91535 0.92491 1.25621 0.94886 0.95643 1.01719 1.69985 1.36593 1.23793 1.24544 0.85421 0.78142 0.78527 0.78996 1.19535 1.20330 1.20416 1.45341 1.70817 1.12201 1.07441 1.18126 0.93329 0.92318 0.86377 1.21125 1.07418 0.93057 1.00112 1.21155 0.96275 1.00705 0.90906 1.21246 1.03009 0.92348 1.00084 1.19628 1.03290 0.95319 0.92605 1.18434 0.76295 0.85597 0.84595 1.43485 1.68605 1.15825 1.10924 1.90770 1.52538 1.17954 1.86179 1.20596 1.06914 1.00011 0.91841 0.95585 0.95414 0.91266 0.92433 0.77476 0.86968 0.82557 0.81790 0.74825 0.75458 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.68 9.20 71.98 0.66 -6.02 16 2 C 0.28 13.69 2.25 44.25 0.10 13.79 16 3 H 0.02 0.89 6.48 -2.38 -0.02 0.88 16 4 C -0.55 -29.50 8.73 25.60 0.22 -29.28 16 5 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 6 C 0.02 1.16 5.31 84.66 0.45 1.61 16 7 N -0.91 -50.17 11.31 21.45 0.24 -49.93 16 8 Si 0.96 42.46 29.54 68.60 2.03 44.48 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 12 N -0.73 -31.87 5.24 -322.61 -1.69 -33.56 16 13 C 0.21 7.97 6.63 38.17 0.25 8.23 16 14 C -0.19 -6.83 8.84 22.45 0.20 -6.63 16 15 C -0.07 -1.85 10.02 22.21 0.22 -1.63 16 16 C -0.15 -3.26 9.54 22.54 0.21 -3.05 16 17 C -0.10 -3.05 5.87 -20.10 -0.12 -3.17 16 18 C 0.56 15.52 8.05 86.79 0.70 16.22 16 19 N -0.82 -12.55 8.82 -175.59 -1.55 -14.10 16 20 O -0.59 -21.78 17.18 -3.87 -0.07 -21.85 16 21 C -0.17 -6.08 9.44 22.67 0.21 -5.87 16 22 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.03 1.20 7.70 -2.39 -0.02 1.18 16 24 H 0.07 3.62 6.06 -2.39 -0.01 3.60 16 25 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 26 H 0.39 16.45 8.55 -92.71 -0.79 15.65 16 27 H 0.11 4.35 6.09 -2.91 -0.02 4.33 16 28 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 29 H 0.16 1.95 6.40 -2.91 -0.02 1.93 16 30 H 0.42 3.43 6.86 -92.70 -0.64 2.80 16 31 H 0.41 4.91 8.93 -92.71 -0.83 4.09 16 32 H 0.11 4.27 7.65 -2.91 -0.02 4.25 16 Total: -1.00 -66.48 274.25 1.00 -65.48 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -1.08 Total: 25.28 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 3.12 Total: -15.80 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -3.00 Total: -97.59 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.07 Total: -21.85 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -66.48 1.00 -65.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226366639.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.518 kcal (2) G-P(sol) polarization free energy of solvation -66.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds