Wall clock time and date at job start Mon Mar 30 2020 03:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21285 * 120.00071 * 2 1 4 4 N 1.34779 * 119.99716 * 179.97438 * 2 1 3 5 5 C 1.39927 * 119.99541 * 184.49482 * 4 2 1 6 6 C 1.38899 * 120.07312 * 325.29461 * 5 4 2 7 7 C 1.38086 * 119.92733 * 180.28186 * 6 5 4 8 8 C 1.38300 * 120.07402 * 359.72071 * 7 6 5 9 9 C 1.38257 * 120.13858 * 0.02562 * 8 7 6 10 10 C 1.38132 * 120.07290 * 359.97438 * 9 8 7 11 11 C 1.50708 * 120.03608 * 179.97438 * 10 9 8 12 12 H 1.08999 * 109.46896 * 145.00406 * 11 10 9 13 13 N 1.46893 * 109.47107 * 25.00122 * 11 10 9 14 14 C 1.50697 * 109.47007 * 264.99880 * 11 10 9 15 15 H 1.08003 * 120.00075 * 0.28037 * 14 11 10 16 16 C 1.37874 * 119.99869 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99984 * 179.97438 * 16 14 11 18 18 Si 1.86798 * 120.00023 * 0.02562 * 16 14 11 19 19 H 1.48502 * 109.47128 * 90.00031 * 18 16 14 20 20 H 1.48504 * 109.47218 * 209.99486 * 18 16 14 21 21 H 1.48493 * 109.47116 * 329.99654 * 18 16 14 22 22 H 1.09002 * 109.47122 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47259 * 300.00701 * 1 2 3 24 24 H 1.09006 * 109.46692 * 60.00143 * 1 2 3 25 25 H 0.96993 * 119.99887 * 4.49300 * 4 2 1 26 26 H 1.08006 * 120.03033 * 359.97438 * 6 5 4 27 27 H 1.08007 * 119.96227 * 179.74715 * 7 6 5 28 28 H 1.07997 * 119.93256 * 180.02562 * 8 7 6 29 29 H 1.08007 * 119.96402 * 180.02562 * 9 8 7 30 30 H 1.00903 * 111.00422 * 300.00117 * 13 11 10 31 31 H 1.00903 * 111.00357 * 63.95343 * 13 11 10 32 32 H 0.96997 * 119.99978 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5769 -1.1690 0.0955 6 6 4.3164 -0.1560 -0.5013 7 6 5.6943 -0.1639 -0.4106 8 6 6.3377 -1.1758 0.2783 9 6 5.6042 -2.1827 0.8779 10 6 4.2256 -2.1807 0.7909 11 6 3.4269 -3.2790 1.4443 12 1 2.4910 -2.8703 1.8253 13 7 4.1992 -3.8518 2.5548 14 6 3.1298 -4.3547 0.4315 15 1 3.4878 -4.2553 -0.5826 16 6 2.4064 -5.4686 0.8012 17 7 2.1466 -6.4072 -0.0828 18 14 1.7939 -5.6442 2.5571 19 1 0.4444 -5.0354 2.6739 20 1 1.7199 -7.0838 2.9140 21 1 2.7302 -4.9531 3.4794 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.6981 -2.0059 -0.0649 26 1 3.8145 0.6343 -1.0398 27 1 6.2701 0.6214 -0.8779 28 1 7.4154 -1.1795 0.3481 29 1 6.1096 -2.9714 1.4156 30 1 5.0721 -4.2376 2.2272 31 1 4.3559 -3.1659 3.2781 32 1 1.6380 -7.1910 0.1773 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238095479.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:26 Heat of formation + Delta-G solvation = -2.950535 kcal Electronic energy + Delta-G solvation = -16471.827121 eV Core-core repulsion = 13818.412354 eV Total energy + Delta-G solvation = -2653.414767 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.19352 -38.22703 -34.89804 -34.29099 -31.97063 -30.59275 -29.44139 -28.14595 -26.40079 -23.01816 -22.28326 -20.01518 -19.88056 -17.37466 -16.93136 -16.56758 -15.49899 -15.24017 -14.79105 -14.30474 -13.97073 -13.75708 -13.27345 -13.16425 -12.62582 -12.42623 -12.38052 -12.03504 -11.92047 -11.20199 -10.98608 -10.82245 -10.31299 -10.12983 -9.83225 -9.47607 -9.38396 -8.64743 -8.15285 -7.54486 -7.29446 -6.11089 -4.23608 1.76956 1.97016 2.87247 3.41413 3.52663 3.54598 3.85999 4.34741 4.61136 4.98798 5.18649 5.29828 5.41708 5.45707 5.48144 5.58680 5.80586 5.84900 5.93991 6.05631 6.16080 6.53984 6.60285 6.82031 6.91873 6.99629 7.11626 7.46335 7.56086 7.84358 8.10330 8.24335 8.43124 8.60987 8.89787 9.52553 10.97748 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.021335 B = 0.010417 C = 0.007967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.112662 B = 2687.335643 C = 3513.572088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.507 3.493 3 O -0.545 6.545 4 N -0.659 5.659 5 C 0.142 3.858 6 C -0.122 4.122 7 C -0.128 4.128 8 C -0.135 4.135 9 C -0.114 4.114 10 C -0.090 4.090 11 C 0.220 3.780 12 H 0.043 0.957 13 N -0.834 5.834 14 C -0.526 4.526 15 H 0.070 0.930 16 C 0.088 3.912 17 N -0.895 5.895 18 Si 0.864 3.136 19 H -0.297 1.297 20 H -0.303 1.303 21 H -0.192 1.192 22 H 0.081 0.919 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.423 0.577 26 H 0.131 0.869 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.331 0.669 31 H 0.309 0.691 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.844 9.823 1.840 10.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.296 3.704 3 O -0.423 6.423 4 N -0.305 5.305 5 C 0.048 3.952 6 C -0.143 4.143 7 C -0.147 4.147 8 C -0.153 4.153 9 C -0.133 4.133 10 C -0.094 4.094 11 C 0.110 3.890 12 H 0.061 0.939 13 N -0.363 5.363 14 C -0.564 4.564 15 H 0.088 0.912 16 C -0.117 4.117 17 N -0.531 5.531 18 Si 0.691 3.309 19 H -0.224 1.224 20 H -0.231 1.231 21 H -0.114 1.114 22 H 0.100 0.900 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.262 0.738 26 H 0.149 0.851 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.138 0.862 30 H 0.146 0.854 31 H 0.120 0.880 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.503 9.884 1.920 10.081 hybrid contribution 0.112 -0.094 0.315 0.347 sum 0.615 9.790 2.235 10.060 Atomic orbital electron populations 1.21847 0.91335 1.04816 1.05051 1.20951 0.90799 0.83337 0.75361 1.90667 1.70514 1.31557 1.49545 1.43754 1.05668 1.10232 1.70837 1.17570 0.82537 0.96733 0.98370 1.21181 0.93747 0.99252 1.00077 1.20837 0.93967 0.98992 1.00910 1.20995 0.99187 0.95415 0.99744 1.20761 0.93104 0.98422 1.01001 1.21095 0.94786 0.96684 0.96858 1.18515 0.91423 0.90087 0.88956 0.93902 1.60029 1.24876 1.37996 1.13438 1.20732 1.36131 1.03505 0.96058 0.91158 1.24996 0.94148 0.94586 0.97999 1.69956 1.38717 1.09306 1.35089 0.87242 0.78757 0.77048 0.87871 1.22441 1.23067 1.11362 0.89992 0.88684 0.88744 0.73752 0.85095 0.86711 0.86867 0.86249 0.85405 0.87963 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 10.39 36.01 0.37 -1.56 16 2 C 0.51 8.23 7.78 -10.98 -0.09 8.14 16 3 O -0.54 -10.42 14.52 5.55 0.08 -10.34 16 4 N -0.66 -11.66 4.78 -9.86 -0.05 -11.71 16 5 C 0.14 2.78 6.29 -83.69 -0.53 2.25 16 6 C -0.12 -2.27 8.70 -39.39 -0.34 -2.61 16 7 C -0.13 -2.12 10.04 -39.61 -0.40 -2.51 16 8 C -0.13 -2.18 10.04 -39.55 -0.40 -2.58 16 9 C -0.11 -2.04 9.27 -39.61 -0.37 -2.41 16 10 C -0.09 -1.79 5.00 -104.43 -0.52 -2.31 16 11 C 0.22 4.72 1.76 -70.02 -0.12 4.59 16 12 H 0.04 0.94 6.88 -51.93 -0.36 0.58 16 13 N -0.83 -16.36 5.43 -6.65 -0.04 -16.40 16 14 C -0.53 -13.59 8.97 -34.44 -0.31 -13.90 16 15 H 0.07 2.05 7.98 -52.48 -0.42 1.63 16 16 C 0.09 2.38 5.47 -17.82 -0.10 2.28 16 17 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 18 Si 0.86 20.43 26.94 -169.99 -4.58 15.85 16 19 H -0.30 -7.05 7.11 56.52 0.40 -6.64 16 20 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 21 H -0.19 -4.24 5.17 56.52 0.29 -3.95 16 22 H 0.08 0.83 7.92 -51.93 -0.41 0.42 16 23 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.42 7.46 7.52 -40.82 -0.31 7.16 16 26 H 0.13 2.44 6.20 -52.48 -0.33 2.11 16 27 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 29 H 0.12 1.97 6.29 -52.48 -0.33 1.64 16 30 H 0.33 6.29 7.20 -39.29 -0.28 6.00 16 31 H 0.31 5.34 9.06 -39.29 -0.36 4.98 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 268.47 15.07 4.05 4.05 Total: -1.00 -31.22 268.47 -6.28 -37.50 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -3.72 Total: 17.11 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -2.79 Total: -10.62 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.69 Total: -53.54 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.58 Total: 15.85 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.22 -6.28 -37.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238095479.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.550 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds