Wall clock time and date at job start Mon Mar 30 2020 03:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21285 * 120.00071 * 2 1 4 4 N 1.34779 * 119.99716 * 179.97438 * 2 1 3 5 5 C 1.39927 * 119.99541 * 184.49482 * 4 2 1 6 6 C 1.38899 * 120.07312 * 325.29461 * 5 4 2 7 7 C 1.38086 * 119.92733 * 180.28186 * 6 5 4 8 8 C 1.38300 * 120.07402 * 359.72071 * 7 6 5 9 9 C 1.38257 * 120.13858 * 0.02562 * 8 7 6 10 10 C 1.38132 * 120.07290 * 359.97438 * 9 8 7 11 11 C 1.50708 * 120.03608 * 179.97438 * 10 9 8 12 12 H 1.08999 * 109.46896 * 145.00406 * 11 10 9 13 13 N 1.46893 * 109.47107 * 25.00122 * 11 10 9 14 14 C 1.50697 * 109.47007 * 264.99880 * 11 10 9 15 15 H 1.08003 * 120.00075 * 0.28037 * 14 11 10 16 16 C 1.37874 * 119.99869 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99984 * 179.97438 * 16 14 11 18 18 Si 1.86798 * 120.00023 * 0.02562 * 16 14 11 19 19 H 1.48502 * 109.47128 * 90.00031 * 18 16 14 20 20 H 1.48504 * 109.47218 * 209.99486 * 18 16 14 21 21 H 1.48493 * 109.47116 * 329.99654 * 18 16 14 22 22 H 1.09002 * 109.47122 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47259 * 300.00701 * 1 2 3 24 24 H 1.09006 * 109.46692 * 60.00143 * 1 2 3 25 25 H 0.96993 * 119.99887 * 4.49300 * 4 2 1 26 26 H 1.08006 * 120.03033 * 359.97438 * 6 5 4 27 27 H 1.08007 * 119.96227 * 179.74715 * 7 6 5 28 28 H 1.07997 * 119.93256 * 180.02562 * 8 7 6 29 29 H 1.08007 * 119.96402 * 180.02562 * 9 8 7 30 30 H 1.00903 * 111.00422 * 300.00117 * 13 11 10 31 31 H 1.00903 * 111.00357 * 63.95343 * 13 11 10 32 32 H 0.96997 * 119.99978 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5769 -1.1690 0.0955 6 6 4.3164 -0.1560 -0.5013 7 6 5.6943 -0.1639 -0.4106 8 6 6.3377 -1.1758 0.2783 9 6 5.6042 -2.1827 0.8779 10 6 4.2256 -2.1807 0.7909 11 6 3.4269 -3.2790 1.4443 12 1 2.4910 -2.8703 1.8253 13 7 4.1992 -3.8518 2.5548 14 6 3.1298 -4.3547 0.4315 15 1 3.4878 -4.2553 -0.5826 16 6 2.4064 -5.4686 0.8012 17 7 2.1466 -6.4072 -0.0828 18 14 1.7939 -5.6442 2.5571 19 1 0.4444 -5.0354 2.6739 20 1 1.7199 -7.0838 2.9140 21 1 2.7302 -4.9531 3.4794 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.6981 -2.0059 -0.0649 26 1 3.8145 0.6343 -1.0398 27 1 6.2701 0.6214 -0.8779 28 1 7.4154 -1.1795 0.3481 29 1 6.1096 -2.9714 1.4156 30 1 5.0721 -4.2376 2.2272 31 1 4.3559 -3.1659 3.2781 32 1 1.6380 -7.1910 0.1773 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238095479.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:26 Heat of formation + Delta-G solvation = -25.471603 kcal Electronic energy + Delta-G solvation = -16472.803708 eV Core-core repulsion = 13818.412354 eV Total energy + Delta-G solvation = -2654.391354 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.55568 -39.60878 -36.53726 -35.68154 -33.97246 -31.76406 -30.88638 -29.38885 -28.25317 -24.65158 -23.64628 -21.48968 -21.31902 -18.96377 -18.67044 -17.87970 -16.97282 -16.68141 -16.33551 -16.00824 -15.33609 -15.23049 -14.81987 -14.52901 -14.23986 -13.88042 -13.61984 -13.37986 -13.04986 -12.84730 -12.67832 -12.35505 -12.09561 -11.75189 -11.41162 -11.26157 -10.81797 -10.71198 -9.59470 -8.96257 -8.92490 -8.21233 -6.35864 0.40605 0.55419 1.52620 1.60603 1.62575 1.98024 2.26140 2.62957 2.95292 3.17021 3.82811 4.08168 4.08802 4.21137 4.28436 4.42610 4.55256 4.61355 4.66919 4.74154 5.00950 5.03759 5.16201 5.44081 5.44829 5.57256 5.64437 5.74563 6.14540 6.20755 6.45479 6.55524 6.80812 7.02342 7.12050 7.43344 8.91056 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.021335 B = 0.010417 C = 0.007967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.112662 B = 2687.335643 C = 3513.572088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.502 3.498 3 O -0.577 6.577 4 N -0.664 5.664 5 C 0.124 3.876 6 C -0.140 4.140 7 C -0.123 4.123 8 C -0.131 4.131 9 C -0.119 4.119 10 C -0.118 4.118 11 C 0.233 3.767 12 H 0.042 0.958 13 N -0.836 5.836 14 C -0.511 4.511 15 H 0.025 0.975 16 C 0.034 3.966 17 N -0.946 5.946 18 Si 0.924 3.076 19 H -0.296 1.296 20 H -0.319 1.319 21 H -0.162 1.162 22 H 0.093 0.907 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.420 0.580 26 H 0.125 0.875 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.133 0.867 30 H 0.337 0.663 31 H 0.329 0.671 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 11.123 3.226 11.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.293 3.707 3 O -0.457 6.457 4 N -0.309 5.309 5 C 0.029 3.971 6 C -0.160 4.160 7 C -0.141 4.141 8 C -0.150 4.150 9 C -0.138 4.138 10 C -0.122 4.122 11 C 0.122 3.878 12 H 0.060 0.940 13 N -0.367 5.367 14 C -0.550 4.550 15 H 0.043 0.957 16 C -0.165 4.165 17 N -0.585 5.585 18 Si 0.750 3.250 19 H -0.223 1.223 20 H -0.248 1.248 21 H -0.083 1.083 22 H 0.112 0.888 23 H 0.131 0.869 24 H 0.132 0.868 25 H 0.259 0.741 26 H 0.143 0.857 27 H 0.164 0.836 28 H 0.167 0.833 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.142 0.858 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.148 11.212 3.314 11.748 hybrid contribution 0.003 -0.416 -0.219 0.470 sum 1.150 10.797 3.096 11.291 Atomic orbital electron populations 1.21909 0.87310 1.06169 1.06777 1.21840 0.92637 0.82277 0.73958 1.90642 1.71648 1.32398 1.50990 1.43897 1.05320 1.10665 1.71032 1.17861 0.83542 0.97109 0.98604 1.21303 0.94887 0.99127 1.00689 1.21249 0.93338 0.99591 0.99917 1.21370 1.00939 0.94267 0.98387 1.21035 0.92512 0.99254 1.01020 1.21028 0.95731 0.96904 0.98552 1.18141 0.92108 0.89057 0.88478 0.94023 1.59741 1.25170 1.38553 1.13196 1.20821 1.34644 1.04303 0.95190 0.95680 1.25809 0.94648 0.94356 1.01689 1.70098 1.40787 1.10354 1.37241 0.86369 0.78707 0.76027 0.83891 1.22307 1.24816 1.08271 0.88847 0.86928 0.86818 0.74106 0.85750 0.83647 0.83290 0.84961 0.84800 0.85771 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 10.39 71.24 0.74 -2.63 16 2 C 0.50 15.99 7.78 87.66 0.68 16.67 16 3 O -0.58 -21.86 14.52 -3.05 -0.04 -21.91 16 4 N -0.66 -23.52 4.78 -303.50 -1.45 -24.97 16 5 C 0.12 4.80 6.29 38.15 0.24 5.04 16 6 C -0.14 -5.08 8.70 22.39 0.19 -4.89 16 7 C -0.12 -3.75 10.04 22.25 0.22 -3.53 16 8 C -0.13 -3.86 10.04 22.29 0.22 -3.64 16 9 C -0.12 -4.05 9.27 22.25 0.21 -3.85 16 10 C -0.12 -4.60 5.00 -19.74 -0.10 -4.70 16 11 C 0.23 9.76 1.76 43.43 0.08 9.84 16 12 H 0.04 1.77 6.88 -2.39 -0.02 1.76 16 13 N -0.84 -30.81 5.43 -174.96 -0.95 -31.76 16 14 C -0.51 -26.79 8.97 25.60 0.23 -26.56 16 15 H 0.02 1.51 7.98 -2.91 -0.02 1.49 16 16 C 0.03 1.89 5.47 84.65 0.46 2.35 16 17 N -0.95 -56.96 13.96 21.45 0.30 -56.66 16 18 Si 0.92 42.01 26.94 68.60 1.85 43.86 16 19 H -0.30 -13.28 7.11 99.48 0.71 -12.58 16 20 H -0.32 -15.34 7.11 99.48 0.71 -14.64 16 21 H -0.16 -6.56 5.17 99.48 0.51 -6.04 16 22 H 0.09 1.73 7.92 -2.39 -0.02 1.71 16 23 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.11 1.94 8.14 -2.38 -0.02 1.93 16 25 H 0.42 15.02 7.52 -92.71 -0.70 14.32 16 26 H 0.12 4.63 6.20 -2.91 -0.02 4.61 16 27 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 28 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 29 H 0.13 4.04 6.29 -2.91 -0.02 4.02 16 30 H 0.34 12.03 7.20 -89.69 -0.65 11.38 16 31 H 0.33 10.32 9.06 -89.69 -0.81 9.51 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -68.58 268.47 1.70 -66.87 By element: Atomic # 1 Polarization: 41.63 SS G_CDS: -1.18 Total: 40.45 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 3.18 Total: -15.89 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -2.10 Total: -113.39 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.04 Total: -21.91 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.85 Total: 43.86 kcal Total: -68.58 1.70 -66.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238095479.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.399 kcal (2) G-P(sol) polarization free energy of solvation -68.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds