Wall clock time and date at job start Mon Mar 30 2020 03:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00326 * 2 1 4 4 C 1.50695 * 109.47313 * 270.00495 * 3 2 1 5 5 C 1.38678 * 120.41675 * 270.25293 * 4 3 2 6 6 C 1.38627 * 118.41930 * 180.24221 * 5 4 3 7 7 C 1.38232 * 119.16085 * 359.75178 * 6 5 4 8 8 N 1.31857 * 120.76541 * 359.97438 * 7 6 5 9 9 C 1.31889 * 121.72235 * 0.02562 * 8 7 6 10 10 C 1.34776 * 119.99614 * 180.02562 * 2 1 3 11 11 O 1.21286 * 119.99925 * 179.97438 * 10 2 1 12 12 C 1.50699 * 120.00181 * 359.97438 * 10 2 1 13 13 C 1.50703 * 109.47289 * 180.02562 * 12 10 2 14 14 H 1.08003 * 119.99814 * 359.97438 * 13 12 10 15 15 C 1.37878 * 120.00286 * 180.02562 * 13 12 10 16 16 N 1.31519 * 119.99806 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00111 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47229 * 59.99579 * 17 15 13 19 19 H 1.48503 * 109.47268 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46993 * 299.99920 * 17 15 13 21 21 H 1.09001 * 109.47135 * 89.99365 * 1 2 3 22 22 H 1.08992 * 109.47242 * 209.99952 * 1 2 3 23 23 H 1.09009 * 109.46653 * 329.99632 * 1 2 3 24 24 H 1.09001 * 109.46632 * 150.00303 * 3 2 1 25 25 H 1.08996 * 109.46728 * 30.00297 * 3 2 1 26 26 H 1.07994 * 120.78944 * 359.96926 * 5 4 3 27 27 H 1.07997 * 120.42083 * 179.72800 * 6 5 4 28 28 H 1.07999 * 119.61954 * 180.02562 * 7 6 5 29 29 H 1.08002 * 119.61237 * 179.97438 * 9 8 7 30 30 H 1.09002 * 109.46907 * 300.00150 * 12 10 2 31 31 H 1.09003 * 109.47215 * 60.00534 * 12 10 2 32 32 H 0.96992 * 119.99886 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 3.5988 1.3042 -2.0846 6 6 3.7904 1.7328 -3.3889 7 6 2.8329 2.5342 -3.9821 8 7 1.7483 2.8902 -3.3222 9 6 1.5331 2.5013 -2.0804 10 6 2.1388 -1.1672 -0.0005 11 8 3.3517 -1.1673 -0.0010 12 6 1.3853 -2.4723 -0.0005 13 6 2.3645 -3.6178 -0.0005 14 1 3.4263 -3.4205 -0.0009 15 6 1.9049 -4.9177 -0.0011 16 7 0.6118 -5.1580 -0.0011 17 14 3.1187 -6.3376 -0.0018 18 1 3.9726 -6.2594 1.2106 19 1 2.3761 -7.6236 -0.0029 20 1 3.9723 -6.2584 -1.2144 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 3.1500 1.1382 0.5138 25 1 1.6085 2.0283 0.5139 26 1 4.3300 0.6778 -1.5955 27 1 4.6766 1.4445 -3.9347 28 1 2.9744 2.8719 -4.9981 29 1 0.6329 2.8135 -1.5718 30 1 0.7589 -2.5302 0.8897 31 1 0.7583 -2.5299 -0.8903 32 1 0.2885 -6.0725 -0.0018 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258683447.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:26 Heat of formation + Delta-G solvation = -25.467055 kcal Electronic energy + Delta-G solvation = -15991.322221 eV Core-core repulsion = 13336.931064 eV Total energy + Delta-G solvation = -2654.391157 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.33110 -40.30122 -36.64270 -35.15575 -33.76008 -32.68552 -30.94638 -28.34339 -27.09439 -25.25684 -24.44821 -23.00597 -20.14282 -18.62928 -18.04888 -17.64448 -17.07793 -16.98262 -16.82772 -16.23530 -15.62653 -14.84500 -14.46008 -14.34352 -14.10272 -13.97231 -13.79452 -13.29100 -13.27580 -13.04001 -12.77902 -12.56748 -12.39288 -12.03282 -11.41791 -10.87298 -10.63586 -10.52087 -10.51103 -9.94612 -9.58300 -8.26316 -6.33771 0.10471 0.31027 1.38699 1.41305 1.49987 1.85552 2.22456 2.43684 2.93816 3.08805 3.54052 3.81181 3.86785 4.05693 4.07786 4.22867 4.40325 4.48430 4.64728 4.67190 4.75467 4.87981 4.96407 5.05637 5.19596 5.25745 5.36955 5.63168 5.74650 5.77032 6.02878 6.51391 6.79403 6.98256 7.32333 7.45568 8.85654 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.033589 B = 0.006139 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.417832 B = 4559.965613 C = 4909.221150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.619 5.619 3 C 0.158 3.842 4 C -0.161 4.161 5 C -0.075 4.075 6 C -0.177 4.177 7 C 0.091 3.909 8 N -0.508 5.508 9 C 0.108 3.892 10 C 0.516 3.484 11 O -0.577 6.577 12 C 0.014 3.986 13 C -0.538 4.538 14 H 0.055 0.945 15 C 0.011 3.989 16 N -0.924 5.924 17 Si 0.963 3.037 18 H -0.271 1.271 19 H -0.273 1.273 20 H -0.274 1.274 21 H 0.053 0.947 22 H 0.066 0.934 23 H 0.109 0.891 24 H 0.072 0.928 25 H 0.127 0.873 26 H 0.119 0.881 27 H 0.154 0.846 28 H 0.183 0.817 29 H 0.180 0.820 30 H 0.042 0.958 31 H 0.034 0.966 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 15.470 -3.206 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.352 5.352 3 C 0.035 3.965 4 C -0.164 4.164 5 C -0.102 4.102 6 C -0.197 4.197 7 C -0.065 4.065 8 N -0.217 5.217 9 C -0.049 4.049 10 C 0.306 3.694 11 O -0.457 6.457 12 C -0.025 4.025 13 C -0.577 4.577 14 H 0.073 0.927 15 C -0.188 4.188 16 N -0.564 5.564 17 Si 0.788 3.212 18 H -0.196 1.196 19 H -0.198 1.198 20 H -0.199 1.199 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.128 0.872 24 H 0.091 0.909 25 H 0.145 0.855 26 H 0.137 0.863 27 H 0.171 0.829 28 H 0.200 0.800 29 H 0.197 0.803 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.298 15.862 -3.602 16.268 hybrid contribution 1.172 -1.639 0.370 2.048 sum 0.874 14.223 -3.232 14.612 Atomic orbital electron populations 1.21973 0.77492 1.04634 1.02317 1.48106 1.08214 1.04852 1.74054 1.20380 0.98768 0.85546 0.91804 1.21406 0.96042 0.99801 0.99161 1.21799 0.97226 0.95804 0.95348 1.22421 1.02205 0.99613 0.95462 1.23230 0.88813 0.93751 1.00717 1.67744 1.21810 1.22989 1.09150 1.22999 0.98358 0.93210 0.90353 1.21504 0.87924 0.86507 0.73422 1.90478 1.16062 1.87972 1.51156 1.19038 0.96072 0.89148 0.98259 1.21369 0.93652 0.91364 1.51266 0.92704 1.25785 0.97178 1.01376 0.94471 1.70021 1.13890 1.21388 1.51080 0.85532 0.78828 0.77978 0.78890 1.19630 1.19826 1.19908 0.92807 0.91557 0.87219 0.90927 0.85545 0.86326 0.82865 0.79997 0.80300 0.94022 0.94831 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.00 10.28 127.77 1.31 3.32 16 2 N -0.62 -20.71 2.86 -851.13 -2.43 -23.15 16 3 C 0.16 4.24 5.60 85.63 0.48 4.72 16 4 C -0.16 -4.42 5.48 -19.77 -0.11 -4.53 16 5 C -0.08 -2.26 9.86 22.47 0.22 -2.04 16 6 C -0.18 -4.39 10.11 22.36 0.23 -4.17 16 7 C 0.09 2.12 11.18 84.69 0.95 3.06 16 8 N -0.51 -13.20 10.36 -195.83 -2.03 -15.23 16 9 C 0.11 2.61 10.86 84.67 0.92 3.53 16 10 C 0.52 23.67 7.67 87.66 0.67 24.34 16 11 O -0.58 -29.86 14.65 -3.05 -0.04 -29.90 16 12 C 0.01 0.74 4.01 29.10 0.12 0.85 16 13 C -0.54 -31.98 8.92 25.60 0.23 -31.75 16 14 H 0.05 3.41 6.75 -2.91 -0.02 3.39 16 15 C 0.01 0.61 5.46 84.65 0.46 1.07 16 16 N -0.92 -54.32 13.29 21.45 0.28 -54.04 16 17 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 21 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 22 H 0.07 1.93 6.44 -2.39 -0.02 1.92 16 23 H 0.11 1.80 7.89 -2.38 -0.02 1.78 16 24 H 0.07 2.23 7.38 -2.39 -0.02 2.21 16 25 H 0.13 2.24 7.85 -2.39 -0.02 2.22 16 26 H 0.12 4.04 7.67 -2.91 -0.02 4.02 16 27 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 28 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 29 H 0.18 3.14 8.06 -2.91 -0.02 3.11 16 30 H 0.04 2.19 7.40 -2.39 -0.02 2.17 16 31 H 0.03 1.81 8.11 -2.39 -0.02 1.79 16 32 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -72.34 281.56 4.40 -67.95 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.11 Total: 8.43 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 5.48 Total: -1.59 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -4.18 Total: -92.42 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.04 Total: -29.90 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -72.34 4.40 -67.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258683447.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.480 kcal (2) G-P(sol) polarization free energy of solvation -72.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds