Wall clock time and date at job start Mon Mar 30 2020 03:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47386 * 2 1 4 4 N 1.46495 * 109.47700 * 180.02562 * 3 2 1 5 5 C 1.34770 * 120.00232 * 180.02562 * 4 3 2 6 6 O 1.21511 * 120.00246 * 359.97438 * 5 4 3 7 7 C 1.48137 * 120.00034 * 179.97438 * 5 4 3 8 8 C 1.40150 * 120.83784 * 359.97438 * 7 5 4 9 9 C 1.38649 * 119.40082 * 180.02562 * 8 7 5 10 10 N 1.31384 * 121.15634 * 0.02562 * 9 8 7 11 11 C 1.33565 * 121.83540 * 359.67844 * 10 9 8 12 12 C 1.41385 * 119.77086 * 180.31733 * 11 10 9 13 13 H 1.08004 * 120.00088 * 180.26584 * 12 11 10 14 14 C 1.40063 * 120.00292 * 0.26746 * 12 11 10 15 15 N 1.30725 * 119.99348 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46841 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47196 * 119.99675 * 16 14 12 19 19 H 1.48502 * 109.47225 * 239.99720 * 16 14 12 20 20 C 1.39338 * 120.83953 * 179.97438 * 7 5 4 21 21 H 1.09001 * 109.47068 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47058 * 299.99403 * 1 2 3 23 23 H 1.08994 * 109.47445 * 60.00261 * 1 2 3 24 24 H 1.09007 * 109.46734 * 239.99943 * 2 1 3 25 25 H 1.09000 * 109.47599 * 120.00168 * 2 1 3 26 26 H 1.08999 * 109.46955 * 59.99639 * 3 2 1 27 27 H 1.09008 * 109.46734 * 300.00329 * 3 2 1 28 28 H 0.97003 * 119.99633 * 359.97438 * 4 3 2 29 29 H 1.08003 * 120.30155 * 0.02562 * 8 7 5 30 30 H 1.07996 * 119.42047 * 179.97438 * 9 8 7 31 31 H 0.97003 * 119.99542 * 180.02562 * 15 14 12 32 32 H 1.08002 * 120.58567 * 359.94855 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1788 2.6097 -0.0002 6 8 3.5713 3.6620 0.0002 7 6 5.6602 2.6097 -0.0003 8 6 6.3786 1.4064 -0.0002 9 6 7.7647 1.4412 0.0003 10 7 8.4160 2.5822 0.0012 11 6 7.7798 3.7566 -0.0047 12 6 8.5245 4.9584 -0.0102 13 1 8.0139 5.9101 -0.0106 14 6 9.9244 4.9149 -0.0152 15 7 10.5424 3.7629 -0.0152 16 14 10.9083 6.5027 -0.0218 17 1 9.9789 7.6609 -0.0213 18 1 11.7684 6.5571 1.1875 19 1 11.7598 6.5524 -1.2374 20 6 6.3745 3.8061 -0.0004 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.9900 0.6025 -0.0006 29 1 5.8574 0.4605 -0.0005 30 1 8.3186 0.5141 0.0008 31 1 11.5120 3.7327 -0.0183 32 1 5.8579 4.7545 -0.0013 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259031804.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:45 Heat of formation + Delta-G solvation = -19.192815 kcal Electronic energy + Delta-G solvation = -15523.908045 eV Core-core repulsion = 12869.788959 eV Total energy + Delta-G solvation = -2654.119086 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.40694 -37.74086 -35.57835 -33.73049 -32.53784 -30.77284 -30.04383 -26.34291 -25.77372 -22.94850 -21.70748 -21.32756 -19.96160 -17.89039 -16.35425 -15.89241 -15.67803 -15.16193 -14.33529 -14.10740 -14.06944 -13.96789 -13.12284 -12.74255 -12.53428 -12.51674 -12.13781 -12.06135 -11.26492 -11.25028 -11.24753 -11.00068 -10.84037 -10.53833 -9.98319 -9.47484 -9.44352 -8.81180 -8.33961 -7.76843 -7.68783 -6.50026 -4.61117 2.11434 2.66088 3.06896 3.11082 3.12012 3.56443 3.87598 3.90428 4.68843 4.75368 4.84897 5.09401 5.43280 5.50383 5.52180 5.69926 5.80072 5.85747 5.97546 6.01597 6.09021 6.20210 6.58316 6.69519 6.76250 7.00044 7.17557 7.35594 7.42237 7.73804 8.00587 8.14426 8.52986 8.74491 8.80237 9.98750 10.21941 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.061052 B = 0.004895 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.517395 B = 5718.221575 C = 6150.975486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C 0.119 3.881 4 N -0.734 5.734 5 C 0.564 3.436 6 O -0.549 6.549 7 C -0.079 4.079 8 C -0.299 4.299 9 C 0.125 3.875 10 N -0.476 5.476 11 C 0.247 3.753 12 C -0.422 4.422 13 H 0.088 0.912 14 C 0.066 3.934 15 N -0.712 5.712 16 Si 0.910 3.090 17 H -0.259 1.259 18 H -0.272 1.272 19 H -0.272 1.272 20 C -0.202 4.202 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.401 0.599 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.274 0.726 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.353 -6.561 0.002 11.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 C -0.005 4.005 4 N -0.387 5.387 5 C 0.354 3.646 6 O -0.428 6.428 7 C -0.088 4.088 8 C -0.323 4.323 9 C -0.041 4.041 10 N -0.190 5.190 11 C 0.122 3.878 12 C -0.453 4.453 13 H 0.106 0.894 14 C -0.159 4.159 15 N -0.333 5.333 16 Si 0.734 3.266 17 H -0.182 1.182 18 H -0.197 1.197 19 H -0.197 1.197 20 C -0.226 4.226 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.237 0.763 29 H 0.114 0.886 30 H 0.141 0.859 31 H 0.085 0.915 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.691 -5.864 0.004 10.484 hybrid contribution -0.290 0.078 -0.005 0.300 sum -8.980 -5.787 -0.001 10.683 Atomic orbital electron populations 1.21674 0.94785 1.01894 1.02262 1.21740 0.96722 0.96207 1.02750 1.21320 0.80390 0.96667 1.02113 1.45937 1.06624 1.09232 1.76902 1.18815 0.88209 0.82921 0.74696 1.90672 1.70463 1.31523 1.50107 1.19599 0.90233 0.95246 1.03716 1.21320 0.95897 0.95220 1.19884 1.22473 0.90411 0.96958 0.94227 1.68644 1.37575 0.96555 1.16186 1.18618 0.87867 0.92103 0.89172 1.19747 0.91042 0.92776 1.41753 0.89397 1.26106 0.98592 0.97646 0.93580 1.70130 1.09606 1.25613 1.27905 0.86217 0.79788 0.81945 0.78625 1.18228 1.19723 1.19728 1.22009 0.95179 0.96264 1.09175 0.92355 0.92417 0.92410 0.91312 0.91313 0.91835 0.91839 0.76327 0.88574 0.85949 0.91475 0.86891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.14 -1.28 6.05 -26.73 -0.16 -1.44 16 3 C 0.12 1.56 5.67 -4.05 -0.02 1.54 16 4 N -0.73 -11.64 5.51 -61.16 -0.34 -11.98 16 5 C 0.56 11.83 7.80 -12.20 -0.10 11.73 16 6 O -0.55 -13.05 16.43 5.36 0.09 -12.96 16 7 C -0.08 -1.82 5.90 -104.71 -0.62 -2.44 16 8 C -0.30 -6.34 9.63 -38.71 -0.37 -6.71 16 9 C 0.12 2.89 11.17 -17.59 -0.20 2.70 16 10 N -0.48 -12.89 7.83 -11.18 -0.09 -12.98 16 11 C 0.25 6.77 6.55 -85.02 -0.56 6.21 16 12 C -0.42 -11.28 9.14 -37.70 -0.34 -11.62 16 13 H 0.09 2.21 7.85 -52.48 -0.41 1.80 16 14 C 0.07 1.67 5.50 -17.34 -0.10 1.58 16 15 N -0.71 -18.60 11.46 55.55 0.64 -17.96 16 16 Si 0.91 18.38 29.56 -169.99 -5.02 13.36 16 17 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 18 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 20 C -0.20 -5.18 9.40 -38.27 -0.36 -5.54 16 21 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 28 H 0.40 5.49 6.60 -40.82 -0.27 5.22 16 29 H 0.10 1.65 6.52 -52.48 -0.34 1.30 16 30 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 31 H 0.27 6.43 8.29 -40.82 -0.34 6.09 16 32 H 0.11 2.88 7.73 -52.49 -0.41 2.47 16 LS Contribution 280.89 15.07 4.23 4.23 Total: -1.00 -30.73 280.89 -6.89 -37.62 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -3.95 Total: 5.48 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -2.46 Total: -4.81 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.21 Total: -42.92 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.96 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.02 Total: 13.36 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.73 -6.89 -37.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259031804.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.430 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds