Wall clock time and date at job start Mon Mar 30 2020 03:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47386 * 2 1 4 4 N 1.46495 * 109.47700 * 180.02562 * 3 2 1 5 5 C 1.34770 * 120.00232 * 180.02562 * 4 3 2 6 6 O 1.21511 * 120.00246 * 359.97438 * 5 4 3 7 7 C 1.48137 * 120.00034 * 179.97438 * 5 4 3 8 8 C 1.40150 * 120.83784 * 359.97438 * 7 5 4 9 9 C 1.38649 * 119.40082 * 180.02562 * 8 7 5 10 10 N 1.31384 * 121.15634 * 0.02562 * 9 8 7 11 11 C 1.33565 * 121.83540 * 359.67844 * 10 9 8 12 12 C 1.41385 * 119.77086 * 180.31733 * 11 10 9 13 13 H 1.08004 * 120.00088 * 180.26584 * 12 11 10 14 14 C 1.40063 * 120.00292 * 0.26746 * 12 11 10 15 15 N 1.30725 * 119.99348 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46841 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47196 * 119.99675 * 16 14 12 19 19 H 1.48502 * 109.47225 * 239.99720 * 16 14 12 20 20 C 1.39338 * 120.83953 * 179.97438 * 7 5 4 21 21 H 1.09001 * 109.47068 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47058 * 299.99403 * 1 2 3 23 23 H 1.08994 * 109.47445 * 60.00261 * 1 2 3 24 24 H 1.09007 * 109.46734 * 239.99943 * 2 1 3 25 25 H 1.09000 * 109.47599 * 120.00168 * 2 1 3 26 26 H 1.08999 * 109.46955 * 59.99639 * 3 2 1 27 27 H 1.09008 * 109.46734 * 300.00329 * 3 2 1 28 28 H 0.97003 * 119.99633 * 359.97438 * 4 3 2 29 29 H 1.08003 * 120.30155 * 0.02562 * 8 7 5 30 30 H 1.07996 * 119.42047 * 179.97438 * 9 8 7 31 31 H 0.97003 * 119.99542 * 180.02562 * 15 14 12 32 32 H 1.08002 * 120.58567 * 359.94855 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1788 2.6097 -0.0002 6 8 3.5713 3.6620 0.0002 7 6 5.6602 2.6097 -0.0003 8 6 6.3786 1.4064 -0.0002 9 6 7.7647 1.4412 0.0003 10 7 8.4160 2.5822 0.0012 11 6 7.7798 3.7566 -0.0047 12 6 8.5245 4.9584 -0.0102 13 1 8.0139 5.9101 -0.0106 14 6 9.9244 4.9149 -0.0152 15 7 10.5424 3.7629 -0.0152 16 14 10.9083 6.5027 -0.0218 17 1 9.9789 7.6609 -0.0213 18 1 11.7684 6.5571 1.1875 19 1 11.7598 6.5524 -1.2374 20 6 6.3745 3.8061 -0.0004 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.9900 0.6025 -0.0006 29 1 5.8574 0.4605 -0.0005 30 1 8.3186 0.5141 0.0008 31 1 11.5120 3.7327 -0.0183 32 1 5.8579 4.7545 -0.0013 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259031804.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:45 Heat of formation + Delta-G solvation = -39.713922 kcal Electronic energy + Delta-G solvation = -15524.797907 eV Core-core repulsion = 12869.788959 eV Total energy + Delta-G solvation = -2655.008947 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.08105 -39.54800 -36.80275 -35.59560 -33.81351 -32.50097 -31.90836 -27.72390 -27.44632 -24.54332 -23.32502 -22.54383 -21.62622 -19.59991 -18.17456 -17.33975 -16.90747 -16.75135 -16.09357 -15.83463 -15.61684 -15.44356 -14.56391 -14.30016 -14.10958 -13.84205 -13.42804 -13.04144 -12.92763 -12.87366 -12.76581 -12.26262 -12.03133 -11.76209 -11.75132 -11.28456 -11.15220 -10.41256 -10.04626 -9.67428 -9.60536 -8.36782 -6.58843 0.29947 0.80880 1.40902 1.49536 1.56435 2.13096 2.16144 2.23068 2.82029 3.82570 3.84557 3.94400 4.07297 4.17327 4.35368 4.51581 4.66362 4.69583 4.72995 4.81759 4.89128 5.11906 5.14780 5.24777 5.30059 5.32140 5.45744 5.48486 5.58241 5.95637 6.19008 6.52760 6.60793 6.86434 7.17579 8.07590 8.38633 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.061052 B = 0.004895 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.517395 B = 5718.221575 C = 6150.975486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.114 3.886 4 N -0.709 5.709 5 C 0.562 3.438 6 O -0.585 6.585 7 C -0.082 4.082 8 C -0.273 4.273 9 C 0.109 3.891 10 N -0.507 5.507 11 C 0.222 3.778 12 C -0.464 4.464 13 H 0.085 0.915 14 C 0.025 3.975 15 N -0.748 5.748 16 Si 0.990 3.010 17 H -0.258 1.258 18 H -0.262 1.262 19 H -0.262 1.262 20 C -0.239 4.239 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.415 0.585 29 H 0.148 0.852 30 H 0.156 0.844 31 H 0.283 0.717 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.967 -8.400 -0.001 13.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.009 4.009 4 N -0.362 5.362 5 C 0.350 3.650 6 O -0.466 6.466 7 C -0.092 4.092 8 C -0.296 4.296 9 C -0.055 4.055 10 N -0.221 5.221 11 C 0.098 3.902 12 C -0.495 4.495 13 H 0.103 0.897 14 C -0.197 4.197 15 N -0.370 5.370 16 Si 0.809 3.191 17 H -0.182 1.182 18 H -0.187 1.187 19 H -0.187 1.187 20 C -0.263 4.263 21 H 0.093 0.907 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.253 0.747 29 H 0.165 0.835 30 H 0.173 0.827 31 H 0.094 0.906 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.331 -7.769 0.002 12.142 hybrid contribution -0.249 0.455 -0.003 0.519 sum -9.581 -7.314 -0.002 12.053 Atomic orbital electron populations 1.21684 0.93614 1.03012 1.02264 1.21708 0.97586 0.93280 1.03833 1.21576 0.78277 0.99510 1.01545 1.45806 1.07942 1.08075 1.74376 1.18582 0.87436 0.83894 0.75073 1.90655 1.70755 1.33160 1.52056 1.19944 0.91843 0.95075 1.02298 1.21771 0.95327 0.96496 1.15992 1.23124 0.91805 0.97083 0.93523 1.68600 1.38951 0.97422 1.17126 1.18919 0.88706 0.92776 0.89845 1.20047 0.92526 0.92815 1.44109 0.89671 1.26977 0.98870 1.01402 0.92472 1.70184 1.10381 1.27812 1.28606 0.85051 0.77894 0.77023 0.79107 1.18195 1.18692 1.18698 1.21955 0.95040 0.97017 1.12275 0.90655 0.92485 0.92478 0.90205 0.90205 0.92469 0.92476 0.74688 0.83492 0.82658 0.90632 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.13 -1.92 6.05 30.59 0.19 -1.74 16 3 C 0.11 2.73 5.67 86.38 0.49 3.22 16 4 N -0.71 -20.70 5.51 -465.71 -2.57 -23.27 16 5 C 0.56 23.12 7.80 86.87 0.68 23.80 16 6 O -0.59 -28.14 16.43 -3.75 -0.06 -28.20 16 7 C -0.08 -3.77 5.90 -19.92 -0.12 -3.88 16 8 C -0.27 -10.90 9.63 22.83 0.22 -10.68 16 9 C 0.11 4.92 11.17 84.86 0.95 5.87 16 10 N -0.51 -27.85 7.83 -189.29 -1.48 -29.33 16 11 C 0.22 12.63 6.55 40.24 0.26 12.90 16 12 C -0.46 -25.93 9.14 23.49 0.21 -25.71 16 13 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 14 C 0.03 1.29 5.50 85.30 0.47 1.76 16 15 N -0.75 -39.81 11.46 21.84 0.25 -39.56 16 16 Si 0.99 38.31 29.56 68.60 2.03 40.33 16 17 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 18 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 19 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 20 C -0.24 -12.75 9.40 23.12 0.22 -12.53 16 21 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 22 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.42 9.65 6.60 -92.71 -0.61 9.03 16 29 H 0.15 4.29 6.52 -2.91 -0.02 4.27 16 30 H 0.16 5.83 8.06 -2.91 -0.02 5.80 16 31 H 0.28 13.40 8.29 -92.71 -0.77 12.63 16 32 H 0.10 5.34 7.73 -2.91 -0.02 5.32 16 Total: -1.00 -69.39 280.89 2.96 -66.43 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.52 Total: 21.77 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 4.28 Total: -8.17 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -3.80 Total: -92.16 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.06 Total: -28.20 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.33 kcal Total: -69.39 2.96 -66.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259031804.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.713 kcal (2) G-P(sol) polarization free energy of solvation -69.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds