Wall clock time and date at job start Mon Mar 30 2020 03:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00186 * 2 1 4 4 C 1.50699 * 109.47434 * 66.04745 * 3 2 1 5 5 O 1.21430 * 120.00172 * 359.97438 * 4 3 2 6 6 C 1.41032 * 120.00123 * 180.02562 * 4 3 2 7 7 H 1.08001 * 119.99511 * 359.97438 * 6 4 3 8 8 C 1.40457 * 119.99875 * 180.02562 * 6 4 3 9 9 N 1.30520 * 120.00305 * 359.97438 * 8 6 4 10 10 Si 1.86796 * 119.99730 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47202 * 59.99733 * 10 8 6 12 12 H 1.48499 * 109.47134 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47291 * 299.99507 * 10 8 6 14 14 C 1.46900 * 111.00163 * 236.04118 * 2 1 3 15 15 C 1.50703 * 109.47016 * 293.96230 * 14 2 1 16 16 C 1.38223 * 119.62264 * 95.01930 * 15 14 2 17 17 C 1.38628 * 119.16031 * 179.97438 * 16 15 14 18 18 C 1.38672 * 118.42475 * 359.97438 * 17 16 15 19 19 C 1.38186 * 119.15778 * 0.02562 * 18 17 16 20 20 N 1.31856 * 119.61279 * 274.99401 * 15 14 2 21 21 H 1.08997 * 109.47150 * 183.95677 * 1 2 3 22 22 H 1.09008 * 109.47178 * 303.95974 * 1 2 3 23 23 H 1.09003 * 109.46703 * 63.95248 * 1 2 3 24 24 H 1.09002 * 109.47096 * 186.04500 * 3 2 1 25 25 H 1.09000 * 109.47351 * 306.03946 * 3 2 1 26 26 H 0.96993 * 120.00388 * 179.97438 * 9 8 6 27 27 H 1.08989 * 109.47527 * 173.95770 * 14 2 1 28 28 H 1.08996 * 109.46581 * 53.95340 * 14 2 1 29 29 H 1.07995 * 120.41821 * 359.95030 * 16 15 14 30 30 H 1.08006 * 120.78822 * 180.02562 * 17 16 15 31 31 H 1.07993 * 120.42192 * 179.97438 * 18 17 16 32 32 H 1.08001 * 119.60956 * 180.27218 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0040 1.4450 2.1418 6 6 2.0359 3.3792 1.5337 7 1 2.5985 3.9149 0.7834 8 6 1.7022 4.0088 2.7441 9 7 1.0227 3.3613 3.6510 10 14 2.2311 5.7730 3.0559 11 1 1.6431 6.6570 2.0177 12 1 1.7579 6.2020 4.3965 13 1 3.7124 5.8628 3.0013 14 6 1.9955 -0.7661 -1.1375 15 6 1.6368 -2.2205 -0.9727 16 6 0.5019 -2.7179 -1.5851 17 6 0.1812 -4.0574 -1.4276 18 6 1.0182 -4.8502 -0.6570 19 6 2.1358 -4.2826 -0.0753 20 7 2.4096 -3.0039 -0.2464 21 1 -0.3633 -1.0252 0.0709 22 1 -0.3634 0.5741 0.8524 23 1 -0.3633 0.4513 -0.9233 24 1 3.0798 1.3443 -0.1082 25 1 1.5613 1.9273 -0.8310 26 1 0.7926 3.7959 4.4870 27 1 3.0797 -0.6613 -1.1755 28 1 1.5611 -0.3874 -2.0627 29 1 -0.1274 -2.0711 -2.1785 30 1 -0.6991 -4.4737 -1.8947 31 1 0.7989 -5.8977 -0.5125 32 1 2.7951 -4.8944 0.5226 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259108869.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:19 Heat of formation + Delta-G solvation = -18.449512 kcal Electronic energy + Delta-G solvation = -15848.858118 eV Core-core repulsion = 13194.771265 eV Total energy + Delta-G solvation = -2654.086853 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.15540 -39.39097 -37.20501 -34.66421 -33.38458 -32.63380 -30.15523 -28.36271 -27.72160 -24.55644 -24.19276 -22.27516 -21.11061 -18.40958 -17.69834 -17.28567 -17.08486 -16.57204 -16.38218 -15.96096 -15.40208 -14.90674 -14.57505 -14.19516 -14.18887 -13.90737 -13.65257 -13.18593 -12.89828 -12.72229 -12.64695 -12.28982 -12.27594 -12.07892 -12.01783 -10.90363 -10.76626 -10.29550 -9.94102 -9.52251 -9.02564 -8.19825 -7.03497 0.18813 0.43496 1.38953 1.39531 1.53876 2.23475 2.25436 2.75748 3.31788 3.39076 3.45353 3.86981 4.04699 4.17828 4.25752 4.29793 4.42533 4.48691 4.54619 4.71953 4.74949 4.80353 4.89797 4.92596 5.16825 5.23512 5.24872 5.28857 5.83385 6.00149 6.08421 6.28750 6.77317 6.90448 7.17584 8.36289 8.58848 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.059105 B = 0.004988 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.619929 B = 5612.509561 C = 5665.331339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.538 5.538 3 C 0.030 3.970 4 C 0.344 3.656 5 O -0.571 6.571 6 C -0.570 4.570 7 H 0.085 0.915 8 C 0.028 3.972 9 N -0.793 5.793 10 Si 0.993 3.007 11 H -0.252 1.252 12 H -0.271 1.271 13 H -0.254 1.254 14 C 0.102 3.898 15 C 0.120 3.880 16 C -0.173 4.173 17 C -0.076 4.076 18 C -0.172 4.172 19 C 0.079 3.921 20 N -0.510 5.510 21 H 0.062 0.938 22 H 0.051 0.949 23 H 0.032 0.968 24 H 0.085 0.915 25 H 0.051 0.949 26 H 0.279 0.721 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.147 0.853 30 H 0.168 0.832 31 H 0.168 0.832 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.855 -10.323 -11.348 15.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.263 5.263 3 C -0.099 4.099 4 C 0.240 3.760 5 O -0.461 6.461 6 C -0.601 4.601 7 H 0.103 0.897 8 C -0.190 4.190 9 N -0.422 5.422 10 Si 0.812 3.188 11 H -0.176 1.176 12 H -0.196 1.196 13 H -0.178 1.178 14 C -0.026 4.026 15 C -0.018 4.018 16 C -0.193 4.193 17 C -0.102 4.102 18 C -0.192 4.192 19 C -0.078 4.078 20 N -0.220 5.220 21 H 0.081 0.919 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.103 0.897 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.164 0.836 30 H 0.186 0.814 31 H 0.186 0.814 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.338 -10.536 -9.995 14.527 hybrid contribution -0.680 0.802 -0.712 1.270 sum -1.018 -9.734 -10.707 14.507 Atomic orbital electron populations 1.22294 0.87293 1.01181 1.00192 1.61559 1.08531 1.13858 1.42308 1.22387 1.00264 0.87886 0.99346 1.20161 0.80712 0.88362 0.86772 1.90335 1.40682 1.67458 1.47671 1.21274 1.35392 1.00205 1.03256 0.89669 1.27187 0.92396 1.04774 0.94657 1.70093 1.27049 1.39254 1.05814 0.85143 0.79872 0.75401 0.78405 1.17604 1.19590 1.17829 1.21031 1.00962 0.88403 0.92211 1.21160 0.92201 0.95379 0.93021 1.22206 0.97488 0.97672 1.01981 1.21996 0.99580 0.92744 0.95878 1.22510 0.95466 1.02889 0.98307 1.23249 0.96780 0.90520 0.97236 1.67419 1.33075 1.06644 1.14908 0.91901 0.93005 0.95012 0.89660 0.93097 0.91042 0.90061 0.91630 0.83567 0.81445 0.81410 0.81135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 8.84 127.69 1.13 2.73 16 2 N -0.54 -23.49 4.49 -931.67 -4.18 -27.68 16 3 C 0.03 1.36 5.32 85.56 0.46 1.82 16 4 C 0.34 20.10 6.60 26.37 0.17 20.27 16 5 O -0.57 -37.99 12.85 -3.50 -0.04 -38.03 16 6 C -0.57 -32.37 9.22 23.50 0.22 -32.15 16 7 H 0.09 4.35 7.85 -2.91 -0.02 4.33 16 8 C 0.03 1.57 5.50 85.43 0.47 2.04 16 9 N -0.79 -47.91 11.72 21.91 0.26 -47.65 16 10 Si 0.99 40.25 29.56 68.60 2.03 42.28 16 11 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 12 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 13 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 14 C 0.10 3.49 5.29 85.56 0.45 3.94 16 15 C 0.12 3.90 5.64 42.55 0.24 4.14 16 16 C -0.17 -4.35 8.36 22.36 0.19 -4.17 16 17 C -0.08 -1.50 10.18 22.47 0.23 -1.27 16 18 C -0.17 -3.39 10.11 22.36 0.23 -3.16 16 19 C 0.08 2.06 11.18 84.67 0.95 3.01 16 20 N -0.51 -17.62 10.27 -183.88 -1.89 -19.51 16 21 H 0.06 2.40 6.40 -2.39 -0.02 2.38 16 22 H 0.05 2.65 5.82 -2.38 -0.01 2.64 16 23 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.09 3.70 7.93 -2.39 -0.02 3.68 16 25 H 0.05 2.13 8.12 -2.39 -0.02 2.11 16 26 H 0.28 15.20 8.29 -92.71 -0.77 14.43 16 27 H 0.08 2.80 7.93 -2.39 -0.02 2.78 16 28 H 0.07 1.88 8.02 -2.39 -0.02 1.86 16 29 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 30 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 31 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 32 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -77.40 277.21 2.00 -75.40 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 1.11 Total: 17.99 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 4.73 Total: -2.80 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -5.82 Total: -94.83 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.04 Total: -38.03 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -77.40 2.00 -75.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259108869.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.949 kcal (2) G-P(sol) polarization free energy of solvation -77.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds