Wall clock time and date at job start Mon Mar 30 2020 03:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47283 * 2 1 4 4 C 1.50693 * 109.47553 * 239.99799 * 2 1 3 5 5 H 1.08005 * 120.00321 * 240.00312 * 4 2 1 6 6 C 1.37881 * 120.00304 * 59.99686 * 4 2 1 7 7 N 1.31513 * 119.99375 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00407 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.46807 * 90.00145 * 8 6 4 10 10 H 1.48493 * 109.46956 * 210.00328 * 8 6 4 11 11 H 1.48495 * 109.46875 * 330.00516 * 8 6 4 12 12 C 1.50705 * 109.46975 * 119.99698 * 2 1 3 13 13 C 1.36205 * 120.70447 * 240.00201 * 12 2 1 14 14 N 1.33514 * 119.90982 * 179.72675 * 13 12 2 15 15 C 1.30637 * 121.50629 * 359.97438 * 14 13 12 16 16 N 1.34745 * 121.49312 * 359.97438 * 15 14 13 17 17 C 1.46502 * 120.04496 * 180.02562 * 16 15 14 18 18 C 1.53009 * 117.49471 * 8.75546 * 17 16 15 19 19 C 1.52996 * 117.50173 * 300.09592 * 17 16 15 20 20 C 1.35022 * 119.91713 * 0.02562 * 16 15 14 21 21 O 1.21985 * 120.70909 * 180.02562 * 20 16 15 22 22 H 1.09003 * 109.47649 * 300.00321 * 1 2 3 23 23 H 1.08997 * 109.47387 * 60.00506 * 1 2 3 24 24 H 1.09003 * 109.47110 * 180.02562 * 1 2 3 25 25 H 0.97002 * 119.99967 * 179.97438 * 7 6 4 26 26 H 1.07998 * 120.04401 * 359.69948 * 13 12 2 27 27 H 1.08006 * 119.25419 * 180.02562 * 15 14 13 28 28 H 1.08998 * 115.55019 * 154.41432 * 17 16 15 29 29 H 1.08995 * 117.49717 * 359.97438 * 18 17 16 30 30 H 1.09003 * 117.49772 * 145.02442 * 18 17 16 31 31 H 1.08997 * 117.50290 * 214.98066 * 19 17 16 32 32 H 1.09002 * 117.49607 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.3429 -2.1618 -4.4117 10 1 2.4867 -0.1416 -5.1122 11 1 3.6294 -1.7584 -3.7120 12 6 2.0322 -0.7104 1.2306 13 6 2.8161 -0.0623 2.1365 14 7 3.2478 -0.7054 3.2240 15 6 2.9359 -1.9541 3.4475 16 7 2.1635 -2.6509 2.5911 17 6 1.8328 -4.0498 2.8734 18 6 2.2179 -4.6034 4.2469 19 6 2.9936 -5.0383 3.0010 20 6 1.6945 -2.0581 1.4722 21 8 0.9938 -2.6751 0.6872 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7095 1.1616 -3.4844 26 1 3.0883 0.9703 1.9751 27 1 3.3048 -2.4388 4.3394 28 1 0.9084 -4.4141 2.4252 29 1 2.7176 -3.9268 4.9401 30 1 1.5472 -5.3323 4.7019 31 1 2.8329 -6.0530 2.6368 32 1 4.0033 -4.6478 2.8743 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259837600.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:08 Heat of formation + Delta-G solvation = 16.853809 kcal Electronic energy + Delta-G solvation = -16528.479548 eV Core-core repulsion = 13875.923562 eV Total energy + Delta-G solvation = -2652.555987 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.77983 -38.81712 -38.39325 -36.33519 -34.14390 -33.09708 -30.39139 -27.24770 -26.33228 -25.13061 -23.36680 -23.13662 -21.60085 -19.42924 -18.79552 -18.08042 -17.43401 -16.92923 -16.68943 -15.71954 -15.42365 -15.21950 -14.64671 -14.08559 -13.89682 -13.80231 -13.53674 -13.06023 -12.90777 -12.55144 -12.42389 -12.36549 -12.21259 -12.07968 -11.65593 -11.29043 -10.85318 -10.75656 -10.56891 -10.42891 -9.11765 -8.09986 -6.20573 -0.17552 0.97857 1.33919 1.36802 1.45859 1.47517 2.40048 2.56701 2.93941 3.16489 3.24663 3.47871 3.71363 3.79616 3.92980 3.99402 4.37488 4.59785 4.69177 4.80007 4.90859 4.95601 5.00556 5.12995 5.15709 5.24705 5.52030 5.58554 5.69972 5.91429 6.00457 6.34944 6.80478 6.90404 7.00701 7.43695 8.94612 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.031313 B = 0.007982 C = 0.007165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.987304 B = 3506.854680 C = 3906.766582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.099 3.901 3 H 0.024 0.976 4 C -0.502 4.502 5 H 0.031 0.969 6 C 0.012 3.988 7 N -0.917 5.917 8 Si 0.951 3.049 9 H -0.283 1.283 10 H -0.272 1.272 11 H -0.273 1.273 12 C -0.229 4.229 13 C 0.120 3.880 14 N -0.541 5.541 15 C 0.348 3.652 16 N -0.493 5.493 17 C 0.000 4.000 18 C -0.134 4.134 19 C -0.173 4.173 20 C 0.510 3.490 21 O -0.557 6.557 22 H 0.021 0.979 23 H 0.060 0.940 24 H 0.023 0.977 25 H 0.262 0.738 26 H 0.171 0.829 27 H 0.251 0.749 28 H 0.123 0.877 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.119 0.881 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 -9.497 16.476 19.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.079 3.921 3 H 0.042 0.958 4 C -0.540 4.540 5 H 0.049 0.951 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.777 3.223 9 H -0.209 1.209 10 H -0.197 1.197 11 H -0.198 1.198 12 C -0.235 4.235 13 C -0.017 4.017 14 N -0.262 5.262 15 C 0.065 3.935 16 N -0.210 5.210 17 C -0.103 4.103 18 C -0.171 4.171 19 C -0.211 4.211 20 C 0.310 3.690 21 O -0.436 6.436 22 H 0.040 0.960 23 H 0.079 0.921 24 H 0.043 0.957 25 H 0.071 0.929 26 H 0.188 0.812 27 H 0.266 0.734 28 H 0.141 0.859 29 H 0.149 0.851 30 H 0.154 0.846 31 H 0.137 0.863 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.947 -9.226 16.252 19.331 hybrid contribution -0.529 -0.559 -1.985 2.129 sum 4.418 -9.785 14.267 17.855 Atomic orbital electron populations 1.21592 0.98107 0.98927 0.99323 1.17338 0.92652 0.93665 0.88451 0.95846 1.21112 1.30350 1.11051 0.91524 0.95061 1.25629 0.95609 0.95882 1.01472 1.69981 1.37877 1.23994 1.23899 0.85670 0.78540 0.78485 0.79638 1.20924 1.19701 1.19761 1.22182 1.05357 0.94270 1.01727 1.22629 0.90835 1.00548 0.87698 1.68341 1.27872 1.07856 1.22163 1.25769 0.85651 0.88020 0.94028 1.46263 1.41343 1.13552 1.19809 1.22330 1.02231 0.79217 1.06526 1.23712 1.02104 1.02517 0.88778 1.23592 0.95931 0.99698 1.01882 1.17346 0.82035 0.88499 0.81154 1.90862 1.39832 1.66742 1.46166 0.95971 0.92085 0.95741 0.92879 0.81228 0.73382 0.85906 0.85069 0.84590 0.86255 0.87771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.71 8.77 71.98 0.63 -6.08 16 2 C 0.10 5.42 2.39 -12.29 -0.03 5.39 16 3 H 0.02 1.33 7.90 -2.39 -0.02 1.31 16 4 C -0.50 -30.53 7.66 25.60 0.20 -30.33 16 5 H 0.03 1.97 7.61 -2.91 -0.02 1.95 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -55.82 11.32 21.45 0.24 -55.58 16 8 Si 0.95 47.48 29.54 68.60 2.03 49.50 16 9 H -0.28 -14.12 7.11 99.48 0.71 -13.42 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 12 C -0.23 -10.60 4.73 -19.65 -0.09 -10.70 16 13 C 0.12 4.52 10.84 83.96 0.91 5.43 16 14 N -0.54 -16.49 10.39 -199.73 -2.08 -18.57 16 15 C 0.35 8.49 11.07 180.32 2.00 10.49 16 16 N -0.49 -15.40 2.92 -632.43 -1.85 -17.25 16 17 C 0.00 0.01 6.22 44.99 0.28 0.29 16 18 C -0.13 -1.39 9.81 30.62 0.30 -1.09 16 19 C -0.17 -2.69 10.26 30.62 0.31 -2.38 16 20 C 0.51 22.89 7.04 84.89 0.60 23.49 16 21 O -0.56 -29.70 14.03 -5.27 -0.07 -29.78 16 22 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.06 3.61 6.07 -2.39 -0.01 3.60 16 24 H 0.02 1.38 6.40 -2.39 -0.02 1.37 16 25 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 26 H 0.17 5.85 7.96 -2.91 -0.02 5.83 16 27 H 0.25 2.81 5.78 -2.91 -0.02 2.79 16 28 H 0.12 3.41 7.70 -2.39 -0.02 3.39 16 29 H 0.13 0.66 6.07 -2.39 -0.01 0.65 16 30 H 0.14 0.86 8.14 -2.39 -0.02 0.85 16 31 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -78.87 269.98 4.95 -73.92 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: 1.13 Total: 2.08 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 5.55 Total: -4.34 kcal Atomic # 7 Polarization: -87.71 SS G_CDS: -3.68 Total: -91.39 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.07 Total: -29.78 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.50 kcal Total: -78.87 4.95 -73.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259837600.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.771 kcal (2) G-P(sol) polarization free energy of solvation -78.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds