Wall clock time and date at job start Mon Mar 30 2020 02:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00355 * 2 1 4 4 H 1.48499 * 109.46876 * 239.99557 * 3 2 1 5 5 H 1.48495 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46830 * 119.99773 * 3 2 1 7 7 C 1.37884 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00275 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99605 * 0.02562 * 7 2 1 10 10 C 1.50709 * 109.47006 * 180.02562 * 9 7 2 11 11 C 1.39033 * 119.82613 * 275.00152 * 10 9 7 12 12 C 1.37913 * 119.02125 * 179.17195 * 11 10 9 13 13 C 1.39644 * 119.24672 * 1.64932 * 12 11 10 14 14 O 1.22115 * 119.54394 * 181.25619 * 13 12 11 15 15 N 1.35299 * 120.90643 * 1.23655 * 13 12 11 16 16 C 1.35846 * 120.41438 * 355.17866 * 15 13 12 17 17 N 1.37445 * 123.17894 * 187.90461 * 16 15 13 18 18 C 1.46473 * 113.19089 * 334.09882 * 17 16 15 19 19 C 1.53521 * 108.15886 * 53.48559 * 18 17 16 20 20 C 1.46734 * 117.26496 * 173.26029 * 15 13 12 21 21 H 0.97001 * 119.99305 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47271 * 60.00106 * 9 7 2 23 23 H 1.08999 * 109.47351 * 299.99550 * 9 7 2 24 24 H 1.08002 * 120.49377 * 359.45464 * 11 10 9 25 25 H 1.07995 * 120.38144 * 181.62009 * 12 11 10 26 26 H 1.00891 * 111.00354 * 99.69774 * 17 16 15 27 27 H 1.09000 * 109.72432 * 173.14668 * 18 17 16 28 28 H 1.08997 * 109.72521 * 293.81837 * 18 17 16 29 29 H 1.09002 * 109.83114 * 53.64342 * 19 18 17 30 30 H 1.08994 * 109.83299 * 174.53500 * 19 18 17 31 31 H 1.08998 * 109.38608 * 279.81869 * 20 15 13 32 32 H 1.09008 * 109.38669 * 39.51673 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0018 11 6 2.7604 -4.1026 -1.1991 12 6 3.6683 -5.1405 -1.1772 13 6 4.0048 -5.7269 0.0446 14 8 4.8253 -6.6309 0.0730 15 7 3.4345 -5.3070 1.1975 16 6 2.5944 -4.2394 1.2002 17 7 2.1088 -3.6673 2.3517 18 6 2.0579 -4.5984 3.4812 19 6 3.4507 -5.2215 3.6508 20 6 3.7295 -6.0753 2.4122 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.4691 -3.6491 -2.1351 25 1 4.1136 -5.4961 -2.0946 26 1 2.6298 -2.8371 2.5906 27 1 1.7824 -4.0612 4.3887 28 1 1.3267 -5.3813 3.2800 29 1 4.2003 -4.4345 3.7338 30 1 3.4701 -5.8462 4.5437 31 1 3.1022 -6.9663 2.4380 32 1 4.7782 -6.3729 2.4064 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259853657.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:57 Heat of formation + Delta-G solvation = -0.011546 kcal Electronic energy + Delta-G solvation = -16572.174359 eV Core-core repulsion = 13918.887036 eV Total energy + Delta-G solvation = -2653.287323 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.26281 -37.82238 -35.95754 -33.93429 -32.72639 -31.39636 -29.79561 -26.32874 -25.24521 -23.77739 -23.09703 -21.09954 -20.37094 -17.12412 -16.91601 -16.39497 -16.28151 -15.48602 -15.08835 -14.58917 -14.41786 -13.68471 -13.55009 -13.22271 -12.86596 -12.42625 -12.24111 -11.74351 -11.41017 -11.22356 -11.00739 -10.75914 -10.67491 -10.41499 -9.80397 -9.57728 -9.45101 -9.16299 -8.86916 -8.38536 -6.86011 -6.01087 -4.06056 1.30599 2.54172 2.91183 3.29526 3.35386 3.37797 4.02271 4.22080 4.44332 4.51115 4.66882 4.94413 5.14010 5.31703 5.39569 5.41550 5.55828 5.58801 5.74552 5.85265 5.90509 6.10764 6.25564 6.68256 6.91084 7.04245 7.16139 7.47703 7.62580 7.67211 7.88998 7.97182 8.35055 8.55952 8.99326 9.57331 11.06662 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.028742 B = 0.008115 C = 0.007074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.951375 B = 3449.526038 C = 3957.154514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.051 0.949 9 C 0.071 3.929 10 C -0.149 4.149 11 C 0.019 3.981 12 C -0.293 4.293 13 C 0.511 3.489 14 O -0.588 6.588 15 N -0.509 5.509 16 C 0.319 3.681 17 N -0.605 5.605 18 C 0.048 3.952 19 C -0.173 4.173 20 C 0.092 3.908 21 H 0.261 0.739 22 H 0.025 0.975 23 H 0.046 0.954 24 H 0.135 0.865 25 H 0.139 0.861 26 H 0.379 0.621 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.479 -7.632 6.546 10.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.070 0.930 9 C 0.034 3.966 10 C -0.156 4.156 11 C -0.004 4.004 12 C -0.315 4.315 13 C 0.317 3.683 14 O -0.475 6.475 15 N -0.226 5.226 16 C 0.115 3.885 17 N -0.239 5.239 18 C -0.081 4.081 19 C -0.212 4.212 20 C -0.030 4.030 21 H 0.071 0.929 22 H 0.043 0.957 23 H 0.064 0.936 24 H 0.153 0.847 25 H 0.157 0.843 26 H 0.211 0.789 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.195 -8.120 6.521 10.894 hybrid contribution 1.284 0.965 0.220 1.621 sum 4.480 -7.156 6.741 10.803 Atomic orbital electron populations 1.69943 1.05922 1.26721 1.50425 1.24963 0.94775 0.98910 0.95388 0.86708 0.79582 0.83396 0.78582 1.20321 1.21345 1.20405 1.21056 0.92699 0.90260 1.51039 0.93025 1.18067 0.91753 0.87837 0.98938 1.20314 1.04475 1.02567 0.88264 1.21610 0.89625 0.90503 0.98643 1.21973 1.08150 1.04428 0.96993 1.16951 0.82430 0.85221 0.83654 1.90870 1.36201 1.33934 1.86541 1.46135 1.38056 1.27369 1.10992 1.18965 0.88827 0.87765 0.92933 1.56439 1.55813 1.09264 1.02363 1.22257 0.95600 0.96296 0.93948 1.22629 0.99598 1.01121 0.97878 1.21782 1.03769 0.94411 0.83037 0.92896 0.95664 0.93561 0.84729 0.84335 0.78921 0.88764 0.89837 0.90650 0.88965 0.90405 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.51 -13.24 9.09 -34.44 -0.31 -13.55 16 8 H 0.05 1.33 7.74 -52.49 -0.41 0.92 16 9 C 0.07 1.70 4.80 -29.03 -0.14 1.56 16 10 C -0.15 -3.04 5.10 -104.17 -0.53 -3.57 16 11 C 0.02 0.36 9.80 -39.41 -0.39 -0.03 16 12 C -0.29 -5.44 10.00 -39.18 -0.39 -5.83 16 13 C 0.51 10.10 7.33 -15.50 -0.11 9.98 16 14 O -0.59 -12.91 16.50 4.81 0.08 -12.83 16 15 N -0.51 -8.83 3.00 -118.56 -0.36 -9.19 16 16 C 0.32 5.76 6.80 -153.66 -1.04 4.71 16 17 N -0.61 -9.63 5.01 -59.87 -0.30 -9.93 16 18 C 0.05 0.55 6.67 -3.79 -0.03 0.53 16 19 C -0.17 -1.79 6.29 -26.46 -0.17 -1.96 16 20 C 0.09 1.25 6.02 -3.92 -0.02 1.23 16 21 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 22 H 0.03 0.64 8.12 -51.93 -0.42 0.22 16 23 H 0.05 1.16 7.20 -51.93 -0.37 0.78 16 24 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 25 H 0.14 2.33 8.06 -52.49 -0.42 1.91 16 26 H 0.38 5.98 8.82 -39.30 -0.35 5.64 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.10 1.35 7.43 -51.92 -0.39 0.97 16 LS Contribution 270.44 15.07 4.08 4.08 Total: -1.00 -30.94 270.44 -8.05 -38.98 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.03 Total: 3.09 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -3.23 Total: -5.39 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.08 Total: -43.49 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.83 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.94 -8.05 -38.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259853657.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.970 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds