Wall clock time and date at job start Mon Mar 30 2020 03:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38301 * 119.96592 * 2 1 4 4 C 1.38261 * 120.13810 * 179.97438 * 3 2 1 5 5 C 1.38132 * 120.06985 * 0.30685 * 4 3 2 6 6 C 1.38852 * 119.93127 * 359.44126 * 5 4 3 7 7 N 1.39945 * 120.07284 * 180.25486 * 6 5 4 8 8 C 1.46495 * 119.99942 * 236.57040 * 7 6 5 9 9 C 1.50697 * 109.47024 * 90.00379 * 8 7 6 10 10 H 1.08004 * 120.00181 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00159 * 179.97438 * 9 8 7 12 12 N 1.31506 * 119.99840 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99998 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47200 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46912 * 120.00407 * 13 11 9 16 16 H 1.48498 * 109.46994 * 240.00275 * 13 11 9 17 17 C 1.34773 * 119.99669 * 56.57318 * 7 6 5 18 18 N 1.34775 * 120.00078 * 185.65771 * 17 7 6 19 19 O 1.21592 * 120.00490 * 5.65593 * 17 7 6 20 20 C 1.38099 * 119.96217 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.47191 * 89.99405 * 1 2 3 22 22 H 1.09000 * 109.47696 * 210.00367 * 1 2 3 23 23 H 1.09004 * 109.47278 * 330.00103 * 1 2 3 24 24 H 1.07995 * 119.93044 * 359.97438 * 3 2 1 25 25 H 1.08002 * 119.96395 * 180.02562 * 4 3 2 26 26 H 1.07999 * 120.03941 * 179.71914 * 5 4 3 27 27 H 1.09008 * 109.47126 * 209.99862 * 8 7 6 28 28 H 1.08998 * 109.47805 * 330.00163 * 8 7 6 29 29 H 0.97006 * 120.00265 * 179.97438 * 12 11 9 30 30 H 0.97006 * 119.99889 * 359.97438 * 18 17 7 31 31 H 0.96996 * 120.00456 * 180.02562 * 18 17 7 32 32 H 1.07999 * 120.03182 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5804 1.2023 0.0005 5 6 4.2761 0.0090 -0.0053 6 6 3.5855 -1.1956 0.0000 7 7 4.2874 -2.4063 -0.0006 8 6 4.0457 -3.3927 -1.0564 9 6 4.9854 -3.1378 -2.2066 10 1 5.6917 -2.3223 -2.1563 11 6 4.9434 -3.9456 -3.3232 12 7 4.0830 -4.9382 -3.3846 13 14 6.1078 -3.6292 -4.7492 14 1 6.9698 -2.4616 -4.4348 15 1 6.9580 -4.8267 -4.9691 16 1 5.3215 -3.3481 -5.9772 17 6 5.1857 -2.6648 0.9703 18 7 5.9434 -3.7777 0.9084 19 8 5.3126 -1.8941 1.9022 20 6 2.1967 -1.1964 0.0005 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 1.6561 2.1324 -0.0004 25 1 4.1170 2.1396 0.0010 26 1 5.3561 0.0128 -0.0095 27 1 4.2161 -4.3950 -0.6633 28 1 3.0157 -3.3088 -1.4032 29 1 4.0531 -5.5064 -4.1703 30 1 5.8419 -4.3928 0.1652 31 1 6.5896 -3.9640 1.6073 32 1 1.6566 -2.1317 0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260007985.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:58 Heat of formation + Delta-G solvation = -29.964153 kcal Electronic energy + Delta-G solvation = -16297.224125 eV Core-core repulsion = 13642.637959 eV Total energy + Delta-G solvation = -2654.586166 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.53556 -39.63068 -36.80309 -34.77251 -34.46648 -33.24291 -30.84733 -29.08930 -27.65308 -25.08177 -23.90802 -22.62944 -20.71980 -19.05177 -18.71664 -18.08787 -17.33140 -16.65036 -16.49293 -16.14116 -15.50567 -15.01573 -14.72940 -14.46247 -14.36368 -13.95854 -13.55453 -13.12985 -12.94565 -12.80986 -12.67805 -12.46488 -12.16375 -11.99647 -11.75043 -11.33228 -10.68164 -10.60654 -10.29282 -9.59155 -9.00600 -8.24044 -6.40537 0.45846 0.51202 1.38339 1.41941 1.52490 1.97462 2.18923 2.38811 2.89741 3.04989 3.45905 4.00076 4.06695 4.25507 4.43468 4.53461 4.65243 4.84097 4.90653 4.95789 4.99513 5.09368 5.32336 5.40977 5.53799 5.66238 5.69472 5.76760 5.97673 6.00017 6.07323 6.36204 6.62584 6.94798 7.31856 7.70015 8.80237 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.021095 B = 0.008754 C = 0.007457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.005355 B = 3197.882609 C = 3753.790708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.077 4.077 3 C -0.134 4.134 4 C -0.103 4.103 5 C -0.145 4.145 6 C 0.161 3.839 7 N -0.577 5.577 8 C 0.254 3.746 9 C -0.547 4.547 10 H 0.048 0.952 11 C 0.026 3.974 12 N -0.915 5.915 13 Si 0.960 3.040 14 H -0.276 1.276 15 H -0.272 1.272 16 H -0.279 1.279 17 C 0.705 3.295 18 N -0.844 5.844 19 O -0.640 6.640 20 C -0.153 4.153 21 H 0.079 0.921 22 H 0.066 0.934 23 H 0.090 0.910 24 H 0.158 0.842 25 H 0.149 0.851 26 H 0.099 0.901 27 H 0.036 0.964 28 H 0.023 0.977 29 H 0.270 0.730 30 H 0.411 0.589 31 H 0.419 0.581 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 6.821 3.948 8.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.078 4.078 3 C -0.152 4.152 4 C -0.122 4.122 5 C -0.166 4.166 6 C 0.068 3.932 7 N -0.307 5.307 8 C 0.135 3.865 9 C -0.586 4.586 10 H 0.066 0.934 11 C -0.175 4.175 12 N -0.554 5.554 13 Si 0.785 3.215 14 H -0.200 1.200 15 H -0.197 1.197 16 H -0.205 1.205 17 C 0.405 3.595 18 N -0.413 5.413 19 O -0.523 6.523 20 C -0.173 4.173 21 H 0.097 0.903 22 H 0.085 0.915 23 H 0.108 0.892 24 H 0.176 0.824 25 H 0.167 0.833 26 H 0.117 0.883 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.243 0.757 31 H 0.252 0.748 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.894 7.169 4.347 9.244 hybrid contribution 1.093 -0.818 -0.966 1.672 sum -2.801 6.351 3.381 7.721 Atomic orbital electron populations 1.20813 0.88495 1.03812 1.03194 1.20136 0.97806 0.91910 0.97957 1.21328 0.93686 0.98384 1.01834 1.21265 0.95062 0.97148 0.98684 1.21172 0.99389 0.92781 1.03224 1.17779 0.91309 0.85204 0.98875 1.44971 1.40366 1.18273 1.27077 1.19163 0.96803 0.86371 0.84199 1.21602 1.19818 1.14906 1.02256 0.93369 1.25616 0.96994 0.94470 1.00437 1.70000 1.36462 1.18291 1.30637 0.85483 0.78828 0.78215 0.78982 1.20025 1.19715 1.20479 1.16010 0.79374 0.82385 0.81685 1.42912 1.42615 1.24770 1.30987 1.90845 1.73723 1.51175 1.36528 1.21119 0.92266 0.99238 1.04648 0.90284 0.91521 0.89154 0.82404 0.83302 0.88297 0.94592 0.95899 0.92092 0.75703 0.74830 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.32 10.01 71.24 0.71 -1.61 16 2 C -0.08 -2.37 5.88 -19.88 -0.12 -2.49 16 3 C -0.13 -3.73 9.70 22.29 0.22 -3.52 16 4 C -0.10 -3.27 10.04 22.25 0.22 -3.05 16 5 C -0.15 -5.94 8.95 22.39 0.20 -5.74 16 6 C 0.16 7.07 5.17 38.15 0.20 7.26 16 7 N -0.58 -26.64 2.56 -652.17 -1.67 -28.31 16 8 C 0.25 12.48 4.74 85.63 0.41 12.89 16 9 C -0.55 -28.81 9.31 25.60 0.24 -28.57 16 10 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 11 C 0.03 1.35 5.46 84.66 0.46 1.81 16 12 N -0.92 -49.43 13.29 21.45 0.28 -49.14 16 13 Si 0.96 41.73 29.54 68.60 2.03 43.76 16 14 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 15 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 16 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 17 C 0.71 31.74 8.32 179.06 1.49 33.23 16 18 N -0.84 -30.86 8.71 -184.75 -1.61 -32.47 16 19 O -0.64 -31.65 16.55 -4.01 -0.07 -31.72 16 20 C -0.15 -5.89 8.96 22.39 0.20 -5.68 16 21 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 23 H 0.09 1.49 8.09 -2.38 -0.02 1.47 16 24 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 25 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 26 H 0.10 4.27 8.05 -2.91 -0.02 4.25 16 27 H 0.04 1.75 6.61 -2.38 -0.02 1.74 16 28 H 0.02 1.20 7.32 -2.39 -0.02 1.18 16 29 H 0.27 13.73 8.31 -92.70 -0.77 12.96 16 30 H 0.41 15.12 6.65 -92.70 -0.62 14.50 16 31 H 0.42 12.52 8.93 -92.71 -0.83 11.69 16 32 H 0.12 4.43 7.80 -2.91 -0.02 4.40 16 Total: -1.00 -65.01 280.41 2.89 -62.12 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: -0.30 Total: 31.23 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 4.23 Total: 4.53 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -3.00 Total: -109.92 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.07 Total: -31.72 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -65.01 2.89 -62.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260007985.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.155 kcal (2) G-P(sol) polarization free energy of solvation -65.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds