Wall clock time and date at job start Mon Mar 30 2020 02:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99836 * 2 1 4 4 H 1.48505 * 109.46825 * 269.99457 * 3 2 1 5 5 H 1.48489 * 109.47322 * 29.99950 * 3 2 1 6 6 H 1.48504 * 109.47106 * 150.00002 * 3 2 1 7 7 C 1.37881 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99810 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99982 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47370 * 179.97438 * 9 7 2 11 11 H 1.09007 * 109.46913 * 305.00051 * 10 9 7 12 12 C 1.53001 * 109.47201 * 64.99779 * 10 9 7 13 13 N 1.46894 * 109.47324 * 185.00185 * 12 10 9 14 14 C 1.50697 * 109.47313 * 184.99857 * 10 9 7 15 15 C 1.38627 * 120.74970 * 300.00025 * 14 10 9 16 16 C 1.38664 * 119.38944 * 180.02562 * 15 14 10 17 17 N 1.31442 * 120.92731 * 359.97438 * 16 15 14 18 18 C 1.32891 * 121.62939 * 0.02562 * 17 16 15 19 19 C 1.47550 * 119.74522 * 179.97438 * 18 17 16 20 20 O 1.21213 * 120.00250 * 0.02562 * 19 18 17 21 21 C 1.38574 * 120.74707 * 120.28228 * 14 10 9 22 22 H 0.97000 * 119.99883 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47271 * 59.99970 * 9 7 2 24 24 H 1.08999 * 109.47201 * 300.00439 * 9 7 2 25 25 H 1.09002 * 109.46969 * 305.00150 * 12 10 9 26 26 H 1.09004 * 109.46917 * 64.99871 * 12 10 9 27 27 H 1.00900 * 111.00146 * 56.04960 * 13 12 10 28 28 H 1.00899 * 111.00000 * 180.02562 * 13 12 10 29 29 H 1.08001 * 120.30578 * 0.02562 * 15 14 10 30 30 H 1.07994 * 119.53805 * 179.97438 * 16 15 14 31 31 H 1.08005 * 119.99990 * 179.72530 * 19 18 17 32 32 H 1.07995 * 120.48194 * 359.96996 * 21 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 1 3.5865 -3.1751 0.8443 12 6 3.6172 -3.3215 -1.3047 13 7 4.0013 -4.7385 -1.2542 14 6 5.5233 -2.6383 0.1267 15 6 6.3141 -2.0144 -0.8258 16 6 7.6933 -2.0337 -0.6837 17 7 8.2587 -2.6340 0.3399 18 6 7.5381 -3.2439 1.2752 19 6 8.2161 -3.9053 2.4065 20 8 9.4259 -3.8906 2.4805 21 6 6.1452 -3.2686 1.1926 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6801 0.8912 24 1 3.8752 -0.6804 -0.8888 25 1 2.5383 -3.2421 -1.4379 26 1 4.1231 -2.8375 -2.1402 27 1 3.5963 -5.1945 -0.4505 28 1 3.7452 -5.2132 -2.1069 29 1 5.8602 -1.5178 -1.6706 30 1 8.3117 -1.5488 -1.4245 31 1 7.6343 -4.3984 3.1712 32 1 5.5603 -3.7680 1.9508 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260153989.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:15 Heat of formation + Delta-G solvation = -33.344501 kcal Electronic energy + Delta-G solvation = -15868.358523 eV Core-core repulsion = 13213.625774 eV Total energy + Delta-G solvation = -2654.732749 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.42337 -39.60002 -37.74800 -34.79414 -33.60969 -32.61176 -31.74389 -27.90115 -26.39086 -24.44726 -24.09571 -22.79704 -20.58642 -19.10187 -17.84869 -17.56345 -16.92745 -16.62267 -16.13352 -15.91082 -15.69444 -15.43835 -15.34289 -14.75289 -14.47787 -14.19393 -13.73560 -13.42297 -13.13090 -12.96350 -12.62150 -12.00598 -11.82989 -11.61215 -11.31648 -11.06852 -10.75621 -10.35111 -10.29203 -10.07014 -9.50833 -8.27721 -6.30229 -0.37868 0.38262 1.35051 1.38749 1.44576 1.47788 2.35651 2.96669 3.00709 3.08293 3.57912 3.70348 3.91637 4.12404 4.16403 4.21863 4.38149 4.45047 4.65542 4.81411 4.82899 4.92564 4.97394 5.13516 5.27180 5.32611 5.62642 5.65607 5.74113 6.24809 6.29873 6.37523 6.68125 6.76880 7.00741 7.34032 8.88105 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.027941 B = 0.006721 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.870118 B = 4165.264423 C = 4570.032518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.010 3.990 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.250 1.250 7 C -0.517 4.517 8 H 0.043 0.957 9 C 0.000 4.000 10 C -0.028 4.028 11 H 0.077 0.923 12 C 0.082 3.918 13 N -0.847 5.847 14 C -0.022 4.022 15 C -0.142 4.142 16 C 0.085 3.915 17 N -0.482 5.482 18 C 0.001 3.999 19 C 0.402 3.598 20 O -0.486 6.486 21 C -0.109 4.109 22 H 0.264 0.736 23 H 0.017 0.983 24 H 0.022 0.978 25 H 0.023 0.977 26 H 0.067 0.933 27 H 0.344 0.656 28 H 0.347 0.653 29 H 0.143 0.857 30 H 0.179 0.821 31 H 0.178 0.822 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.772 -6.993 0.440 12.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.187 4.187 3 Si 0.761 3.239 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.174 1.174 7 C -0.555 4.555 8 H 0.062 0.938 9 C -0.038 4.038 10 C -0.047 4.047 11 H 0.095 0.905 12 C -0.049 4.049 13 N -0.377 5.377 14 C -0.030 4.030 15 C -0.162 4.162 16 C -0.074 4.074 17 N -0.194 5.194 18 C -0.134 4.134 19 C 0.259 3.741 20 O -0.357 6.357 21 C -0.129 4.129 22 H 0.073 0.927 23 H 0.035 0.965 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.156 0.844 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.196 0.804 31 H 0.193 0.807 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 12.960 -6.626 0.650 14.570 hybrid contribution -2.377 0.877 -0.493 2.581 sum 10.583 -5.749 0.157 12.045 Atomic orbital electron populations 1.70040 1.08113 1.27926 1.52881 1.25844 0.95378 1.02921 0.94540 0.85860 0.79556 0.79361 0.79122 1.19233 1.21515 1.17415 1.21347 0.91356 0.93122 1.49630 0.93836 1.19530 0.94310 0.93268 0.96732 1.20028 0.88847 0.97151 0.98686 0.90482 1.21622 0.97660 0.89012 0.96615 1.58796 1.67613 1.02618 1.08676 1.20400 0.96201 0.93022 0.93341 1.22452 0.94962 0.98767 1.00033 1.23101 0.92775 0.96144 0.95360 1.67691 1.41678 1.07516 1.02486 1.22653 0.92073 1.00689 0.97994 1.24992 0.89028 0.75002 0.85034 1.90495 1.19826 1.50313 1.75090 1.22399 0.94055 0.97806 0.98640 0.92658 0.96490 0.95981 0.95908 0.91498 0.84402 0.84077 0.83940 0.80446 0.80673 0.81266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.58 13.96 21.45 0.30 -56.28 16 2 C 0.01 0.56 5.47 84.66 0.46 1.03 16 3 Si 0.94 42.09 27.47 68.60 1.88 43.97 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.25 -10.56 6.54 99.48 0.65 -9.90 16 7 C -0.52 -26.83 8.89 25.60 0.23 -26.60 16 8 H 0.04 2.47 7.32 -2.91 -0.02 2.44 16 9 C 0.00 -0.02 3.27 29.85 0.10 0.08 16 10 C -0.03 -0.93 2.15 -11.54 -0.02 -0.95 16 11 H 0.08 2.51 7.94 -2.38 -0.02 2.49 16 12 C 0.08 2.54 5.96 86.30 0.51 3.06 16 13 N -0.85 -20.82 9.34 -186.72 -1.74 -22.56 16 14 C -0.02 -0.63 4.52 -19.69 -0.09 -0.72 16 15 C -0.14 -3.95 8.84 22.46 0.20 -3.75 16 16 C 0.09 2.31 11.18 84.85 0.95 3.26 16 17 N -0.48 -14.89 10.08 -185.16 -1.87 -16.75 16 18 C 0.00 0.03 6.74 41.76 0.28 0.31 16 19 C 0.40 8.79 11.48 70.28 0.81 9.60 16 20 O -0.49 -14.99 17.71 -2.82 -0.05 -15.04 16 21 C -0.11 -2.68 9.49 22.67 0.22 -2.46 16 22 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 23 H 0.02 0.72 7.20 -2.38 -0.02 0.70 16 24 H 0.02 0.89 7.09 -2.39 -0.02 0.87 16 25 H 0.02 0.84 6.82 -2.39 -0.02 0.83 16 26 H 0.07 2.04 7.31 -2.38 -0.02 2.03 16 27 H 0.34 7.69 8.99 -89.69 -0.81 6.88 16 28 H 0.35 7.32 9.08 -89.70 -0.81 6.51 16 29 H 0.14 3.67 7.29 -2.91 -0.02 3.64 16 30 H 0.18 3.72 8.06 -2.91 -0.02 3.70 16 31 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.17 2.97 8.01 -2.91 -0.02 2.95 16 Total: -1.00 -69.68 278.77 1.64 -68.04 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -0.53 Total: 15.76 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 3.64 Total: -17.14 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -3.31 Total: -95.60 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.05 Total: -15.04 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.88 Total: 43.97 kcal Total: -69.68 1.64 -68.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260153989.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.696 kcal (2) G-P(sol) polarization free energy of solvation -69.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds