Wall clock time and date at job start Mon Mar 30 2020 03:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47296 * 2 1 4 4 C 1.50696 * 109.47090 * 240.00359 * 2 1 3 5 5 H 1.08000 * 120.00023 * 240.00310 * 4 2 1 6 6 C 1.37878 * 120.00374 * 59.99278 * 4 2 1 7 7 N 1.31513 * 119.99667 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00222 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46836 * 90.00677 * 8 6 4 10 10 H 1.48504 * 109.47118 * 210.00174 * 8 6 4 11 11 H 1.48495 * 109.47593 * 330.00644 * 8 6 4 12 12 N 1.46500 * 109.47286 * 120.00220 * 2 1 3 13 13 C 1.39000 * 119.99888 * 275.00015 * 12 2 1 14 14 C 1.39347 * 119.69273 * 359.97438 * 13 12 2 15 15 C 1.37712 * 118.78923 * 179.97438 * 14 13 12 16 16 C 1.39151 * 118.85553 * 359.72135 * 15 14 13 17 17 C 1.37616 * 119.36493 * 0.57761 * 16 15 14 18 18 N 1.32146 * 120.57991 * 359.41284 * 17 16 15 19 19 C 1.50937 * 107.13637 * 179.82893 * 16 15 14 20 20 O 1.43981 * 106.07698 * 342.77821 * 19 16 15 21 21 C 1.44005 * 105.06172 * 28.09312 * 20 19 16 22 22 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47250 * 299.99502 * 1 2 3 24 24 H 1.08994 * 109.47597 * 59.99519 * 1 2 3 25 25 H 0.97004 * 120.00052 * 179.97438 * 7 6 4 26 26 H 0.96998 * 120.00191 * 94.99701 * 12 2 1 27 27 H 1.08000 * 120.59891 * 0.02562 * 14 13 12 28 28 H 1.08002 * 119.71156 * 179.69722 * 17 16 15 29 29 H 1.09004 * 110.29138 * 223.52268 * 19 16 15 30 30 H 1.09001 * 109.98704 * 101.86870 * 19 16 15 31 31 H 1.09004 * 110.15123 * 212.60023 * 21 20 19 32 32 H 1.09003 * 110.21106 * 90.88269 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6531 -1.5884 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.3447 -2.1614 -4.4124 10 1 2.4870 -0.1400 -5.1121 11 1 3.6307 -1.7564 -3.7121 12 7 2.0183 -0.6906 1.1961 13 6 2.1511 0.0028 2.3935 14 6 1.8183 1.3548 2.4487 15 6 1.9565 2.0235 3.6447 16 6 2.4176 1.3240 4.7557 17 6 2.7341 -0.0093 4.6302 18 7 2.5926 -0.6276 3.4709 19 6 2.4709 2.3006 5.9054 20 8 2.4266 3.6134 5.3157 21 6 1.7054 3.4449 4.0807 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 0.7092 1.1618 -3.4844 26 1 2.2490 -1.6318 1.1526 27 1 1.4579 1.8686 1.5698 28 1 3.0972 -0.5563 5.4877 29 1 3.3959 2.1726 6.4676 30 1 1.6112 2.1537 6.5592 31 1 2.0799 4.1400 3.3293 32 1 0.6394 3.6055 4.2422 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260217028.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:00 Heat of formation + Delta-G solvation = -0.391344 kcal Electronic energy + Delta-G solvation = -16028.687284 eV Core-core repulsion = 13375.383492 eV Total energy + Delta-G solvation = -2653.303793 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.62964 -38.18414 -35.74227 -32.88098 -32.10875 -30.48456 -28.68800 -27.24047 -25.34784 -24.81074 -21.97261 -21.55841 -20.24749 -17.63443 -16.44940 -16.16679 -16.08253 -15.50834 -14.78752 -14.64077 -14.16076 -13.83570 -13.34214 -12.97622 -12.56734 -12.46316 -12.14796 -11.92389 -11.34075 -11.22591 -11.06911 -10.78641 -10.46320 -10.30175 -10.17312 -9.38183 -9.21594 -9.08063 -8.98422 -8.59013 -6.93222 -6.25522 -4.33828 1.65693 1.76150 3.19020 3.26119 3.29061 3.90395 4.04079 4.26056 4.28647 4.56738 4.83880 5.08014 5.12453 5.36338 5.44788 5.51176 5.64879 5.79002 5.87988 6.13985 6.30844 6.49370 6.54676 6.72825 6.79700 6.89674 6.99431 7.29131 7.56758 7.66222 7.83289 8.00205 8.51752 8.59298 8.86064 9.34036 10.80773 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.045136 B = 0.005743 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.193790 B = 4874.597014 C = 5201.352562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.268 3.732 3 H 0.043 0.957 4 C -0.532 4.532 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.904 3.096 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.693 5.693 13 C 0.422 3.578 14 C -0.211 4.211 15 C -0.051 4.051 16 C -0.284 4.284 17 C 0.179 3.821 18 N -0.559 5.559 19 C 0.113 3.887 20 O -0.367 6.367 21 C 0.092 3.908 22 H 0.032 0.968 23 H 0.013 0.987 24 H 0.093 0.907 25 H 0.266 0.734 26 H 0.398 0.602 27 H 0.140 0.860 28 H 0.148 0.852 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 2.326 11.270 11.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.166 3.834 3 H 0.061 0.939 4 C -0.571 4.571 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.318 5.318 13 C 0.182 3.818 14 C -0.237 4.237 15 C -0.058 4.058 16 C -0.291 4.291 17 C 0.021 3.979 18 N -0.278 5.278 19 C 0.036 3.964 20 O -0.286 6.286 21 C 0.016 3.984 22 H 0.051 0.949 23 H 0.032 0.968 24 H 0.112 0.888 25 H 0.076 0.924 26 H 0.232 0.768 27 H 0.157 0.843 28 H 0.165 0.835 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.629 1.876 10.878 11.057 hybrid contribution 0.019 -0.164 -0.952 0.967 sum 0.648 1.712 9.926 10.093 Atomic orbital electron populations 1.22208 0.98350 0.99919 1.00773 1.18876 0.90953 0.93512 0.80101 0.93893 1.21169 1.32481 1.13449 0.89979 0.91848 1.24866 0.94665 0.94937 0.99119 1.69863 1.35929 1.22449 1.24154 0.86389 0.79294 0.79284 0.81860 1.20439 1.20976 1.19764 1.45536 1.66969 1.12819 1.06438 1.18608 0.88103 0.88283 0.86797 1.20746 1.10441 0.94263 0.98240 1.20892 0.94958 0.96283 0.93710 1.21418 1.13266 0.97184 0.97215 1.21416 0.92785 0.89738 0.93983 1.67388 1.22504 1.38886 0.99024 1.21378 1.01731 0.80183 0.93143 1.89036 1.76987 1.27771 1.34779 1.21674 0.97057 0.92967 0.86727 0.94911 0.96789 0.88820 0.92427 0.76798 0.84268 0.83450 0.89398 0.91682 0.88313 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.19 37.16 0.34 -3.19 16 2 C 0.27 6.36 2.25 -69.09 -0.16 6.20 16 3 H 0.04 1.10 6.45 -51.93 -0.33 0.76 16 4 C -0.53 -13.74 8.73 -34.44 -0.30 -14.04 16 5 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -23.66 11.32 55.43 0.63 -23.03 16 8 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 12 N -0.69 -14.78 5.24 -55.00 -0.29 -15.07 16 13 C 0.42 8.52 7.64 -154.94 -1.18 7.34 16 14 C -0.21 -4.01 8.83 -39.36 -0.35 -4.36 16 15 C -0.05 -0.84 6.38 -104.43 -0.67 -1.51 16 16 C -0.28 -4.36 6.37 -104.39 -0.66 -5.03 16 17 C 0.18 2.82 11.18 -17.64 -0.20 2.62 16 18 N -0.56 -10.54 10.39 -12.45 -0.13 -10.67 16 19 C 0.11 1.42 7.63 36.12 0.28 1.69 16 20 O -0.37 -5.27 11.72 -35.23 -0.41 -5.68 16 21 C 0.09 1.27 7.63 36.05 0.27 1.54 16 22 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.01 0.28 7.67 -51.93 -0.40 -0.12 16 24 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 25 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 26 H 0.40 8.21 8.66 -40.82 -0.35 7.85 16 27 H 0.14 2.71 6.10 -52.49 -0.32 2.39 16 28 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 270.40 15.07 4.07 4.07 Total: -1.00 -27.60 270.40 -7.67 -35.27 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -3.80 Total: 6.97 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -2.72 Total: -7.08 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.21 Total: -48.77 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.41 Total: -5.68 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.60 -7.67 -35.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260217028.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.879 kcal (2) G-P(sol) polarization free energy of solvation -27.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds