Wall clock time and date at job start Mon Mar 30 2020 03:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47296 * 2 1 4 4 C 1.50696 * 109.47090 * 240.00359 * 2 1 3 5 5 H 1.08000 * 120.00023 * 240.00310 * 4 2 1 6 6 C 1.37878 * 120.00374 * 59.99278 * 4 2 1 7 7 N 1.31513 * 119.99667 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00222 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46836 * 90.00677 * 8 6 4 10 10 H 1.48504 * 109.47118 * 210.00174 * 8 6 4 11 11 H 1.48495 * 109.47593 * 330.00644 * 8 6 4 12 12 N 1.46500 * 109.47286 * 120.00220 * 2 1 3 13 13 C 1.39000 * 119.99888 * 275.00015 * 12 2 1 14 14 C 1.39347 * 119.69273 * 359.97438 * 13 12 2 15 15 C 1.37712 * 118.78923 * 179.97438 * 14 13 12 16 16 C 1.39151 * 118.85553 * 359.72135 * 15 14 13 17 17 C 1.37616 * 119.36493 * 0.57761 * 16 15 14 18 18 N 1.32146 * 120.57991 * 359.41284 * 17 16 15 19 19 C 1.50937 * 107.13637 * 179.82893 * 16 15 14 20 20 O 1.43981 * 106.07698 * 342.77821 * 19 16 15 21 21 C 1.44005 * 105.06172 * 28.09312 * 20 19 16 22 22 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47250 * 299.99502 * 1 2 3 24 24 H 1.08994 * 109.47597 * 59.99519 * 1 2 3 25 25 H 0.97004 * 120.00052 * 179.97438 * 7 6 4 26 26 H 0.96998 * 120.00191 * 94.99701 * 12 2 1 27 27 H 1.08000 * 120.59891 * 0.02562 * 14 13 12 28 28 H 1.08002 * 119.71156 * 179.69722 * 17 16 15 29 29 H 1.09004 * 110.29138 * 223.52268 * 19 16 15 30 30 H 1.09001 * 109.98704 * 101.86870 * 19 16 15 31 31 H 1.09004 * 110.15123 * 212.60023 * 21 20 19 32 32 H 1.09003 * 110.21106 * 90.88269 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6531 -1.5884 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.3447 -2.1614 -4.4124 10 1 2.4870 -0.1400 -5.1121 11 1 3.6307 -1.7564 -3.7121 12 7 2.0183 -0.6906 1.1961 13 6 2.1511 0.0028 2.3935 14 6 1.8183 1.3548 2.4487 15 6 1.9565 2.0235 3.6447 16 6 2.4176 1.3240 4.7557 17 6 2.7341 -0.0093 4.6302 18 7 2.5926 -0.6276 3.4709 19 6 2.4709 2.3006 5.9054 20 8 2.4266 3.6134 5.3157 21 6 1.7054 3.4449 4.0807 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 0.7092 1.1618 -3.4844 26 1 2.2490 -1.6318 1.1526 27 1 1.4579 1.8686 1.5698 28 1 3.0972 -0.5563 5.4877 29 1 3.3959 2.1726 6.4676 30 1 1.6112 2.1537 6.5592 31 1 2.0799 4.1400 3.3293 32 1 0.6394 3.6055 4.2422 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260217028.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:00 Heat of formation + Delta-G solvation = -17.858891 kcal Electronic energy + Delta-G solvation = -16029.444734 eV Core-core repulsion = 13375.383492 eV Total energy + Delta-G solvation = -2654.061242 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.90371 -39.48235 -37.38535 -34.67469 -33.43561 -31.97749 -30.23462 -28.54249 -27.29538 -26.08891 -23.38052 -22.93278 -21.88289 -19.22374 -17.87316 -17.78890 -17.24198 -16.90488 -16.49996 -15.92992 -15.50948 -15.37187 -14.94081 -14.32338 -14.05970 -13.86950 -13.57054 -13.23772 -13.06695 -12.97628 -12.76409 -12.40251 -12.27576 -12.10429 -11.45511 -11.14519 -10.83080 -10.56632 -10.45866 -10.22459 -8.45072 -8.21943 -6.37829 0.30907 0.40985 1.42258 1.43436 1.53313 2.28977 2.51916 2.88604 2.98406 3.08427 3.30775 3.67300 3.85148 4.14431 4.37961 4.41827 4.58489 4.64544 4.64935 4.78621 4.83413 4.92862 4.98711 5.02532 5.23621 5.32141 5.52863 5.63909 5.74855 5.83559 6.01365 6.22894 6.67970 6.92658 7.24390 7.38465 8.83031 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.045136 B = 0.005743 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.193790 B = 4874.597014 C = 5201.352562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.279 3.721 3 H 0.019 0.981 4 C -0.551 4.551 5 H 0.060 0.940 6 C 0.023 3.977 7 N -0.911 5.911 8 Si 0.967 3.033 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.271 1.271 12 N -0.703 5.703 13 C 0.400 3.600 14 C -0.233 4.233 15 C -0.058 4.058 16 C -0.274 4.274 17 C 0.173 3.827 18 N -0.572 5.572 19 C 0.113 3.887 20 O -0.377 6.377 21 C 0.094 3.906 22 H 0.030 0.970 23 H 0.024 0.976 24 H 0.073 0.927 25 H 0.268 0.732 26 H 0.397 0.603 27 H 0.123 0.877 28 H 0.189 0.811 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.942 2.409 12.983 13.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.175 3.825 3 H 0.036 0.964 4 C -0.589 4.589 5 H 0.079 0.921 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.792 3.208 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.196 1.196 12 N -0.330 5.330 13 C 0.162 3.838 14 C -0.258 4.258 15 C -0.066 4.066 16 C -0.280 4.280 17 C 0.016 3.984 18 N -0.292 5.292 19 C 0.036 3.964 20 O -0.296 6.296 21 C 0.017 3.983 22 H 0.049 0.951 23 H 0.044 0.956 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.232 0.768 27 H 0.141 0.859 28 H 0.206 0.794 29 H 0.132 0.868 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.073 1.968 12.638 12.835 hybrid contribution -0.089 -0.129 -1.297 1.307 sum 0.984 1.838 11.340 11.530 Atomic orbital electron populations 1.22013 0.98092 0.99479 1.00237 1.18514 0.91033 0.92202 0.80704 0.96376 1.21473 1.32689 1.13603 0.91169 0.92131 1.25628 0.94795 0.95579 1.01763 1.69973 1.36651 1.23459 1.24794 0.85422 0.78747 0.78245 0.78411 1.19834 1.20633 1.19580 1.45206 1.68615 1.12687 1.06485 1.18723 0.89423 0.88760 0.86869 1.20675 1.12083 0.94193 0.98895 1.21276 0.94045 0.98076 0.93195 1.21897 1.10832 0.97340 0.97917 1.22105 0.91877 0.90431 0.93962 1.67401 1.22592 1.39588 0.99595 1.21631 1.04260 0.78381 0.92116 1.89037 1.77204 1.28615 1.34744 1.21791 0.98316 0.91265 0.86891 0.95124 0.95650 0.90849 0.92298 0.76831 0.85907 0.79381 0.86794 0.89177 0.87495 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.60 9.19 71.98 0.66 -5.94 16 2 C 0.28 13.72 2.25 44.24 0.10 13.82 16 3 H 0.02 0.99 6.45 -2.39 -0.02 0.97 16 4 C -0.55 -29.09 8.73 25.60 0.22 -28.87 16 5 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 6 C 0.02 1.21 5.30 84.65 0.45 1.66 16 7 N -0.91 -49.54 11.32 21.45 0.24 -49.29 16 8 Si 0.97 41.72 29.54 68.60 2.03 43.75 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 12 N -0.70 -30.91 5.24 -327.93 -1.72 -32.62 16 13 C 0.40 16.36 7.64 133.11 1.02 17.37 16 14 C -0.23 -8.97 8.83 22.41 0.20 -8.78 16 15 C -0.06 -1.85 6.38 -19.74 -0.13 -1.97 16 16 C -0.27 -7.64 6.37 -19.72 -0.13 -7.77 16 17 C 0.17 5.02 11.18 84.50 0.94 5.96 16 18 N -0.57 -21.12 10.39 -193.29 -2.01 -23.13 16 19 C 0.11 2.37 7.63 71.31 0.54 2.91 16 20 O -0.38 -9.58 11.72 -148.98 -1.75 -11.33 16 21 C 0.09 2.37 7.63 71.26 0.54 2.91 16 22 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.02 1.09 7.67 -2.38 -0.02 1.07 16 24 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 25 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 26 H 0.40 16.92 8.66 -92.71 -0.80 16.12 16 27 H 0.12 5.04 6.10 -2.91 -0.02 5.02 16 28 H 0.19 3.76 8.06 -2.91 -0.02 3.74 16 29 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.10 2.13 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -59.44 270.40 1.56 -57.88 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.34 Total: 23.43 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 4.43 Total: -8.68 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -3.48 Total: -105.05 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -1.75 Total: -11.33 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -59.44 1.56 -57.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260217028.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.020 kcal (2) G-P(sol) polarization free energy of solvation -59.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds