Wall clock time and date at job start Mon Mar 30 2020 03:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32348 * 120.48304 * 2 1 4 4 C 1.31775 * 120.76858 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.11646 * 180.10316 * 4 3 2 6 6 C 1.50703 * 109.47195 * 90.00383 * 5 4 3 7 7 H 1.08005 * 119.99624 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00265 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99800 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00124 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46963 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47246 * 119.99563 * 10 8 6 13 13 H 1.48498 * 109.47257 * 240.00047 * 10 8 6 14 14 N 1.31777 * 121.77234 * 0.10947 * 4 3 2 15 15 C 1.32532 * 120.78095 * 359.97438 * 14 4 3 16 16 C 1.38066 * 119.08218 * 359.84645 * 15 14 4 17 17 C 1.50364 * 121.74448 * 180.48233 * 16 15 14 18 18 O 1.42825 * 110.11216 * 344.03030 * 17 16 15 19 19 C 1.43197 * 113.23312 * 51.54301 * 18 17 16 20 20 C 1.50561 * 119.58400 * 179.79706 * 15 14 4 21 21 H 1.08993 * 109.47116 * 270.01923 * 1 2 3 22 22 H 1.08994 * 109.46949 * 30.02411 * 1 2 3 23 23 H 1.08996 * 109.46586 * 150.01944 * 1 2 3 24 24 H 1.08998 * 109.47537 * 210.00457 * 5 4 3 25 25 H 1.09002 * 109.47244 * 330.00839 * 5 4 3 26 26 H 0.97001 * 119.99584 * 180.02562 * 9 8 6 27 27 H 1.08997 * 109.36179 * 104.22776 * 17 16 15 28 28 H 1.09007 * 109.36617 * 223.82918 * 17 16 15 29 29 H 1.09001 * 109.60848 * 169.69059 * 19 18 17 30 30 H 1.09003 * 109.60709 * 49.18420 * 19 18 17 31 31 H 1.09006 * 109.43983 * 43.01583 * 20 15 14 32 32 H 1.08995 * 109.41359 * 283.10150 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1784 1.1406 0.0000 4 6 3.4962 1.1471 0.0005 5 6 4.2229 2.4673 0.0029 6 6 4.4647 2.9051 1.4245 7 1 4.1256 2.2891 2.2443 8 6 5.1178 4.0925 1.6786 9 7 5.5302 4.8428 0.6803 10 14 5.4181 4.6347 3.4407 11 1 4.8613 3.6211 4.3722 12 1 6.8781 4.7730 3.6740 13 1 4.7531 5.9414 3.6766 14 7 4.1956 0.0303 -0.0011 15 6 3.5906 -1.1489 -0.0028 16 6 2.2107 -1.1952 0.0004 17 6 1.4629 -2.4996 0.0094 18 8 2.3366 -3.5691 -0.3553 19 6 3.5468 -3.5956 0.4096 20 6 4.4162 -2.4079 -0.0093 21 1 -0.3633 0.0003 1.0276 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3632 -0.8902 -0.5135 24 1 5.1779 2.3574 -0.5108 25 1 3.6186 3.2157 -0.5099 26 1 5.9901 5.6779 0.8591 27 1 1.0661 -2.6817 1.0081 28 1 0.6380 -2.4484 -0.7013 29 1 4.0810 -4.5261 0.2169 30 1 3.3105 -3.5197 1.4710 31 1 5.2459 -2.3013 0.6897 32 1 4.8066 -2.5800 -1.0123 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260460477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:10 Heat of formation + Delta-G solvation = -13.036387 kcal Electronic energy + Delta-G solvation = -16154.937516 eV Core-core repulsion = 13501.085393 eV Total energy + Delta-G solvation = -2653.852123 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.98914 -38.33633 -34.63018 -33.80477 -32.42174 -30.96425 -28.93158 -28.45579 -25.26711 -24.45515 -23.08262 -21.12325 -20.11543 -17.76322 -16.59492 -16.42995 -15.98122 -15.11727 -14.81658 -14.50505 -14.15417 -13.63145 -13.55143 -12.91636 -12.59711 -12.43204 -12.15177 -11.83484 -11.73993 -11.41995 -11.24516 -10.85246 -10.69735 -10.53343 -10.03776 -9.73616 -9.51912 -9.44335 -8.58037 -8.45385 -8.44622 -6.07925 -4.10402 1.42955 1.60126 3.29350 3.35937 3.41063 3.73013 4.23178 4.39547 4.46514 4.53620 4.69960 4.80076 5.00313 5.14077 5.16758 5.28941 5.32909 5.49424 5.53678 5.59623 5.66973 5.74066 5.84468 6.06982 6.18895 6.27823 6.96353 7.04391 7.46058 7.47789 7.68460 7.86107 8.20241 8.89258 8.91635 9.51357 11.03244 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.033642 B = 0.006555 C = 0.006070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.091041 B = 4270.608607 C = 4612.097638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.179 3.821 3 N -0.518 5.518 4 C 0.369 3.631 5 C 0.079 3.921 6 C -0.504 4.504 7 H 0.053 0.947 8 C 0.061 3.939 9 N -0.892 5.892 10 Si 0.901 3.099 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.282 1.282 14 N -0.520 5.520 15 C 0.183 3.817 16 C -0.269 4.269 17 C 0.121 3.879 18 O -0.377 6.377 19 C 0.062 3.938 20 C -0.104 4.104 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.263 0.737 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.449 -15.057 -0.897 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.030 3.970 3 N -0.233 5.233 4 C 0.105 3.895 5 C 0.040 3.960 6 C -0.543 4.543 7 H 0.072 0.928 8 C -0.141 4.141 9 N -0.530 5.530 10 Si 0.729 3.271 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.208 1.208 14 N -0.234 5.234 15 C 0.036 3.964 16 C -0.274 4.274 17 C 0.043 3.957 18 O -0.296 6.296 19 C -0.016 4.016 20 C -0.142 4.142 21 H 0.101 0.899 22 H 0.101 0.899 23 H 0.094 0.906 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.904 -14.134 -1.092 15.768 hybrid contribution -0.091 -0.104 1.180 1.188 sum -6.995 -14.238 0.088 15.863 Atomic orbital electron populations 1.20772 0.88577 1.03605 1.03346 1.21566 0.97176 0.87931 0.90291 1.68337 1.10600 1.28860 1.15512 1.24435 0.85833 0.95573 0.83648 1.18266 0.94858 0.83800 0.99051 1.20801 1.37573 1.05513 0.90456 0.92842 1.24930 0.95370 0.96189 0.97584 1.69955 1.39050 1.13352 1.30690 0.86388 0.77945 0.78524 0.84285 1.19857 1.20772 1.20769 1.68411 1.41385 0.97907 1.15704 1.21107 0.90417 0.94348 0.90554 1.21322 0.96210 0.97893 1.11933 1.21182 0.91474 0.82332 1.00727 1.88043 1.30631 1.49219 1.61663 1.22662 0.85425 0.98167 0.95300 1.21040 0.98376 0.90356 1.04448 0.89902 0.89859 0.90622 0.93334 0.93308 0.92694 0.91954 0.87844 0.87835 0.92521 0.88311 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.81 36.01 0.35 -0.96 16 2 C 0.18 3.19 6.83 -82.20 -0.56 2.63 16 3 N -0.52 -11.67 10.28 -6.97 -0.07 -11.75 16 4 C 0.37 9.05 6.83 -157.23 -1.07 7.98 16 5 C 0.08 2.17 5.41 -29.03 -0.16 2.01 16 6 C -0.50 -14.75 9.09 -34.44 -0.31 -15.06 16 7 H 0.05 1.58 7.74 -52.48 -0.41 1.18 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 10 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 N -0.52 -11.82 10.26 -7.12 -0.07 -11.90 16 15 C 0.18 3.38 6.68 -82.42 -0.55 2.83 16 16 C -0.27 -4.47 5.80 -104.68 -0.61 -5.08 16 17 C 0.12 1.48 6.01 35.84 0.22 1.70 16 18 O -0.38 -4.84 10.80 -35.23 -0.38 -5.22 16 19 C 0.06 0.68 6.84 37.18 0.25 0.94 16 20 C -0.10 -1.44 6.27 -27.93 -0.18 -1.61 16 21 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 23 H 0.08 0.70 6.25 -51.93 -0.32 0.38 16 24 H 0.05 1.39 8.14 -51.93 -0.42 0.96 16 25 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.10 1.06 6.62 -51.93 -0.34 0.71 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.59 8.07 -51.93 -0.42 0.17 16 31 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 272.66 15.07 4.11 4.11 Total: -1.00 -33.25 272.66 -7.43 -40.67 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -4.01 Total: -4.04 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -2.71 Total: -2.96 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.59 Total: -49.54 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.38 Total: -5.22 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -33.25 -7.43 -40.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.637 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds