Wall clock time and date at job start Mon Mar 30 2020 03:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32348 * 120.48304 * 2 1 4 4 C 1.31775 * 120.76858 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.11646 * 180.10316 * 4 3 2 6 6 C 1.50703 * 109.47195 * 90.00383 * 5 4 3 7 7 H 1.08005 * 119.99624 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00265 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99800 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00124 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46963 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47246 * 119.99563 * 10 8 6 13 13 H 1.48498 * 109.47257 * 240.00047 * 10 8 6 14 14 N 1.31777 * 121.77234 * 0.10947 * 4 3 2 15 15 C 1.32532 * 120.78095 * 359.97438 * 14 4 3 16 16 C 1.38066 * 119.08218 * 359.84645 * 15 14 4 17 17 C 1.50364 * 121.74448 * 180.48233 * 16 15 14 18 18 O 1.42825 * 110.11216 * 344.03030 * 17 16 15 19 19 C 1.43197 * 113.23312 * 51.54301 * 18 17 16 20 20 C 1.50561 * 119.58400 * 179.79706 * 15 14 4 21 21 H 1.08993 * 109.47116 * 270.01923 * 1 2 3 22 22 H 1.08994 * 109.46949 * 30.02411 * 1 2 3 23 23 H 1.08996 * 109.46586 * 150.01944 * 1 2 3 24 24 H 1.08998 * 109.47537 * 210.00457 * 5 4 3 25 25 H 1.09002 * 109.47244 * 330.00839 * 5 4 3 26 26 H 0.97001 * 119.99584 * 180.02562 * 9 8 6 27 27 H 1.08997 * 109.36179 * 104.22776 * 17 16 15 28 28 H 1.09007 * 109.36617 * 223.82918 * 17 16 15 29 29 H 1.09001 * 109.60848 * 169.69059 * 19 18 17 30 30 H 1.09003 * 109.60709 * 49.18420 * 19 18 17 31 31 H 1.09006 * 109.43983 * 43.01583 * 20 15 14 32 32 H 1.08995 * 109.41359 * 283.10150 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1784 1.1406 0.0000 4 6 3.4962 1.1471 0.0005 5 6 4.2229 2.4673 0.0029 6 6 4.4647 2.9051 1.4245 7 1 4.1256 2.2891 2.2443 8 6 5.1178 4.0925 1.6786 9 7 5.5302 4.8428 0.6803 10 14 5.4181 4.6347 3.4407 11 1 4.8613 3.6211 4.3722 12 1 6.8781 4.7730 3.6740 13 1 4.7531 5.9414 3.6766 14 7 4.1956 0.0303 -0.0011 15 6 3.5906 -1.1489 -0.0028 16 6 2.2107 -1.1952 0.0004 17 6 1.4629 -2.4996 0.0094 18 8 2.3366 -3.5691 -0.3553 19 6 3.5468 -3.5956 0.4096 20 6 4.4162 -2.4079 -0.0093 21 1 -0.3633 0.0003 1.0276 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3632 -0.8902 -0.5135 24 1 5.1779 2.3574 -0.5108 25 1 3.6186 3.2157 -0.5099 26 1 5.9901 5.6779 0.8591 27 1 1.0661 -2.6817 1.0081 28 1 0.6380 -2.4484 -0.7013 29 1 4.0810 -4.5261 0.2169 30 1 3.3105 -3.5197 1.4710 31 1 5.2459 -2.3013 0.6897 32 1 4.8066 -2.5800 -1.0123 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260460477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:09 Heat of formation + Delta-G solvation = -36.640134 kcal Electronic energy + Delta-G solvation = -16155.961051 eV Core-core repulsion = 13501.085393 eV Total energy + Delta-G solvation = -2654.875658 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.42119 -39.45243 -36.08504 -35.59763 -34.18350 -32.12688 -30.86374 -29.62531 -26.89766 -25.60110 -24.79503 -22.55339 -21.53105 -19.16673 -18.69820 -17.63596 -17.17923 -16.71274 -16.18874 -15.90564 -15.56986 -14.80780 -14.73252 -14.40925 -14.08146 -14.03504 -13.52759 -13.28436 -13.15011 -12.98313 -12.67794 -12.66676 -12.35484 -12.12798 -11.61719 -11.59418 -11.22286 -10.70177 -10.68898 -10.14589 -9.91727 -8.29821 -6.42588 -0.08535 0.15006 1.35280 1.37050 1.49896 2.33137 2.72813 2.80143 3.01146 3.07089 3.19417 3.40706 3.66303 3.88995 4.06238 4.18894 4.41747 4.42992 4.45659 4.56090 4.69158 4.74878 4.79360 4.87905 4.99801 5.07126 5.15168 5.31349 5.56124 5.59366 5.98632 6.04077 6.18694 6.62487 7.24201 7.29464 8.82292 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.033642 B = 0.006555 C = 0.006070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.091041 B = 4270.608607 C = 4612.097638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.165 3.835 3 N -0.550 5.550 4 C 0.339 3.661 5 C 0.091 3.909 6 C -0.526 4.526 7 H 0.042 0.958 8 C 0.010 3.990 9 N -0.925 5.925 10 Si 0.975 3.025 11 H -0.271 1.271 12 H -0.270 1.270 13 H -0.269 1.269 14 N -0.551 5.551 15 C 0.159 3.841 16 C -0.254 4.254 17 C 0.121 3.879 18 O -0.384 6.384 19 C 0.066 3.934 20 C -0.104 4.104 21 H 0.102 0.898 22 H 0.078 0.922 23 H 0.116 0.884 24 H 0.020 0.980 25 H 0.021 0.979 26 H 0.270 0.730 27 H 0.091 0.909 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.999 -17.543 0.348 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.018 3.982 3 N -0.266 5.266 4 C 0.073 3.927 5 C 0.052 3.948 6 C -0.565 4.565 7 H 0.061 0.939 8 C -0.189 4.189 9 N -0.564 5.564 10 Si 0.798 3.202 11 H -0.195 1.195 12 H -0.195 1.195 13 H -0.194 1.194 14 N -0.267 5.267 15 C 0.013 3.987 16 C -0.258 4.258 17 C 0.044 3.956 18 O -0.302 6.302 19 C -0.011 4.011 20 C -0.142 4.142 21 H 0.120 0.880 22 H 0.097 0.903 23 H 0.135 0.865 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.470 -16.654 0.141 18.684 hybrid contribution 0.340 0.559 0.730 0.980 sum -8.130 -16.095 0.871 18.053 Atomic orbital electron populations 1.20967 0.84407 1.05414 1.05015 1.22499 0.99678 0.87069 0.88984 1.68225 1.09802 1.31714 1.16811 1.23629 0.86885 0.94950 0.87204 1.17834 0.93444 0.85635 0.97896 1.20990 1.38411 1.06136 0.90941 0.93937 1.25899 0.94586 0.95897 1.02527 1.70067 1.39306 1.13832 1.33168 0.85262 0.78398 0.78283 0.78227 1.19550 1.19470 1.19420 1.68281 1.42446 0.98954 1.16990 1.21963 0.92329 0.94312 0.90054 1.21927 0.95710 0.99843 1.08341 1.21467 0.91318 0.79582 1.03237 1.88054 1.31080 1.48794 1.62239 1.22835 0.84629 0.98003 0.95600 1.21230 0.98577 0.89342 1.05009 0.88010 0.90338 0.86531 0.96207 0.96053 0.92074 0.89127 0.84945 0.84419 0.91517 0.88143 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.21 9.81 71.24 0.70 -1.51 16 2 C 0.16 5.70 6.83 42.59 0.29 5.99 16 3 N -0.55 -25.61 10.28 -175.96 -1.81 -27.41 16 4 C 0.34 17.59 6.83 138.76 0.95 18.54 16 5 C 0.09 5.37 5.41 29.10 0.16 5.53 16 6 C -0.53 -32.32 9.09 25.60 0.23 -32.09 16 7 H 0.04 2.63 7.74 -2.91 -0.02 2.61 16 8 C 0.01 0.59 5.46 84.65 0.46 1.05 16 9 N -0.92 -57.11 13.29 21.45 0.28 -56.83 16 10 Si 0.98 45.82 29.54 68.60 2.03 47.84 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 14 N -0.55 -26.17 10.26 -176.45 -1.81 -27.98 16 15 C 0.16 5.81 6.68 42.37 0.28 6.10 16 16 C -0.25 -7.94 5.80 -19.90 -0.12 -8.05 16 17 C 0.12 2.43 6.01 71.13 0.43 2.86 16 18 O -0.38 -8.15 10.80 -148.98 -1.61 -9.75 16 19 C 0.07 1.21 6.84 71.99 0.49 1.70 16 20 C -0.10 -2.70 6.27 29.82 0.19 -2.51 16 21 H 0.10 1.89 8.14 -2.39 -0.02 1.88 16 22 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.12 1.57 6.25 -2.39 -0.01 1.56 16 24 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.02 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.13 1.94 6.62 -2.38 -0.02 1.92 16 29 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 1.12 8.07 -2.39 -0.02 1.10 16 31 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 32 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -77.26 272.66 2.27 -74.99 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: 1.12 Total: 1.53 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 4.06 Total: -2.39 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -3.33 Total: -112.22 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -1.61 Total: -9.75 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -77.26 2.27 -74.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.352 kcal (2) G-P(sol) polarization free energy of solvation -77.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds