Wall clock time and date at job start Mon Mar 30 2020 03:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31723 * 120.23870 * 2 1 4 4 C 1.33452 * 120.57430 * 181.07163 * 3 2 1 5 5 C 1.41588 * 119.37030 * 178.68045 * 4 3 2 6 6 H 1.08002 * 120.00425 * 180.02562 * 5 4 3 7 7 C 1.40067 * 120.00222 * 359.97438 * 5 4 3 8 8 N 1.30694 * 119.99744 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00599 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 180.02562 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00689 * 9 7 5 12 12 H 1.48504 * 109.46636 * 60.00248 * 9 7 5 13 13 N 1.33331 * 121.26490 * 358.95811 * 4 3 2 14 14 C 1.32327 * 120.89684 * 359.39998 * 13 4 3 15 15 C 1.38392 * 119.21005 * 2.11994 * 14 13 4 16 16 C 1.50551 * 123.11513 * 176.33106 * 15 14 13 17 17 C 1.52868 * 111.24317 * 29.45585 * 16 15 14 18 18 O 1.43005 * 108.43943 * 270.18051 * 17 16 15 19 19 C 1.42433 * 114.22909 * 60.81352 * 18 17 16 20 20 C 1.50406 * 118.76880 * 182.99871 * 14 13 4 21 21 H 1.09002 * 109.46996 * 90.00456 * 1 2 3 22 22 H 1.09008 * 109.47303 * 210.00389 * 1 2 3 23 23 H 1.08998 * 109.47301 * 330.00709 * 1 2 3 24 24 H 0.96996 * 120.00343 * 179.97438 * 8 7 5 25 25 H 1.08989 * 109.12697 * 149.91448 * 16 15 14 26 26 H 1.09002 * 109.12189 * 269.06641 * 16 15 14 27 27 H 1.08991 * 109.64552 * 29.87019 * 17 16 15 28 28 H 1.09000 * 109.63818 * 150.29059 * 17 16 15 29 29 H 1.09006 * 109.80564 * 152.56563 * 19 18 17 30 30 H 1.09000 * 109.80463 * 273.37831 * 19 18 17 31 31 H 1.09000 * 109.25820 * 108.64362 * 20 14 13 32 32 H 1.08996 * 109.23387 * 349.17981 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1704 1.1380 0.0000 4 6 3.5047 1.1459 -0.0215 5 6 4.1914 2.3838 -0.0493 6 1 5.2711 2.4021 -0.0673 7 6 3.4705 3.5847 -0.0547 8 7 2.1639 3.5626 -0.0334 9 14 4.3764 5.2179 -0.0907 10 1 3.3924 6.3299 -0.0902 11 1 5.2472 5.3275 1.1071 12 1 5.2100 5.2945 -1.3173 13 7 4.2035 0.0104 -0.0228 14 6 3.5930 -1.1632 0.0092 15 6 2.2097 -1.2054 -0.0003 16 6 1.4264 -2.4902 -0.0469 17 6 2.1935 -3.6312 0.6213 18 8 3.0003 -4.2746 -0.3687 19 6 3.9670 -3.4242 -0.9779 20 6 4.4284 -2.4122 0.0752 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 1.6646 4.3942 -0.0368 25 1 0.4766 -2.3483 0.4686 26 1 1.2323 -2.7526 -1.0870 27 1 2.8306 -3.2317 1.4103 28 1 1.4893 -4.3466 1.0461 29 1 4.8167 -4.0157 -1.3189 30 1 3.5186 -2.9011 -1.8225 31 1 4.3337 -2.8561 1.0661 32 1 5.4723 -2.1559 -0.1056 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260490929.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:15 Heat of formation + Delta-G solvation = -24.505218 kcal Electronic energy + Delta-G solvation = -16620.623323 eV Core-core repulsion = 13966.273875 eV Total energy + Delta-G solvation = -2654.349449 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.57711 -39.45675 -35.95444 -35.25405 -33.98731 -32.04654 -30.08119 -29.21388 -27.36871 -26.06394 -22.83659 -22.36497 -21.41023 -19.39563 -18.29945 -17.93723 -17.04411 -16.42152 -16.00151 -15.51716 -15.29953 -14.74408 -14.55160 -14.00283 -13.85701 -13.40512 -13.33890 -13.20541 -12.84057 -12.68036 -12.63659 -12.55157 -12.34384 -12.03277 -11.76930 -11.17356 -10.79790 -10.62602 -10.41894 -9.56275 -9.26990 -8.43492 -6.72940 0.68766 0.97225 1.36910 1.49466 1.50751 2.18083 2.70556 2.95667 3.58751 3.76840 3.89935 4.02667 4.06599 4.15874 4.24785 4.37750 4.49169 4.61401 4.73615 4.79673 4.85808 4.88950 4.92787 5.02707 5.10140 5.18956 5.24294 5.35512 5.54378 5.86544 6.14699 6.26713 6.57006 6.63712 7.20577 8.23180 8.37222 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.041019 B = 0.007597 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.440546 B = 3684.580847 C = 4264.266025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.153 3.847 3 N -0.538 5.538 4 C 0.364 3.636 5 C -0.445 4.445 6 H 0.085 0.915 7 C 0.025 3.975 8 N -0.748 5.748 9 Si 0.999 3.001 10 H -0.260 1.260 11 H -0.259 1.259 12 H -0.259 1.259 13 N -0.628 5.628 14 C 0.171 3.829 15 C -0.329 4.329 16 C -0.075 4.075 17 C 0.059 3.941 18 O -0.395 6.395 19 C 0.082 3.918 20 C -0.103 4.103 21 H 0.077 0.923 22 H 0.099 0.901 23 H 0.059 0.941 24 H 0.283 0.717 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.036 0.964 31 H 0.102 0.898 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.182 -8.143 0.556 8.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.001 4.001 3 N -0.257 5.257 4 C 0.125 3.875 5 C -0.481 4.481 6 H 0.103 0.897 7 C -0.198 4.198 8 N -0.370 5.370 9 Si 0.817 3.183 10 H -0.184 1.184 11 H -0.183 1.183 12 H -0.183 1.183 13 N -0.349 5.349 14 C 0.022 3.978 15 C -0.337 4.337 16 C -0.113 4.113 17 C -0.017 4.017 18 O -0.315 6.315 19 C 0.005 3.995 20 C -0.141 4.141 21 H 0.095 0.905 22 H 0.117 0.883 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.110 0.890 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.143 0.857 29 H 0.136 0.864 30 H 0.055 0.945 31 H 0.120 0.880 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.905 -7.254 0.501 7.517 hybrid contribution 0.034 0.587 -0.033 0.589 sum -1.871 -6.667 0.468 6.941 Atomic orbital electron populations 1.20654 0.87832 1.03084 1.02757 1.22409 0.98384 0.89030 0.90236 1.69158 1.08985 1.27565 1.19953 1.20312 0.86365 0.91820 0.89021 1.19609 0.94737 0.88941 1.44785 0.89691 1.27032 0.95771 1.04663 0.92366 1.70196 1.08220 1.30220 1.28357 0.85031 0.78579 0.74540 0.80114 1.18420 1.18296 1.18347 1.68666 1.41571 0.98804 1.25867 1.21440 0.91518 0.93873 0.91018 1.20773 0.94587 0.97154 1.21220 1.20730 0.98682 0.90691 1.01220 1.22892 0.93446 0.94981 0.90421 1.87762 1.49888 1.37890 1.55924 1.22512 0.92149 0.91322 0.93554 1.21188 0.99564 0.91470 1.01864 0.90488 0.88304 0.92237 0.90575 0.88963 0.91868 0.93013 0.85718 0.86357 0.94532 0.88035 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.16 9.74 71.24 0.69 -2.47 16 2 C 0.15 7.39 6.83 42.89 0.29 7.68 16 3 N -0.54 -30.95 7.82 -181.86 -1.42 -32.37 16 4 C 0.36 21.76 7.37 135.19 1.00 22.75 16 5 C -0.45 -25.88 9.38 23.54 0.22 -25.66 16 6 H 0.08 4.79 7.85 -2.91 -0.02 4.77 16 7 C 0.02 1.30 5.50 85.31 0.47 1.77 16 8 N -0.75 -40.58 11.43 21.84 0.25 -40.33 16 9 Si 1.00 38.91 29.56 68.60 2.03 40.94 16 10 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 11 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 12 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 13 N -0.63 -34.87 10.22 -182.63 -1.87 -36.74 16 14 C 0.17 7.94 6.07 42.43 0.26 8.19 16 15 C -0.33 -14.26 5.54 -19.56 -0.11 -14.36 16 16 C -0.07 -2.37 4.86 29.76 0.14 -2.22 16 17 C 0.06 1.59 6.47 71.94 0.47 2.06 16 18 O -0.40 -11.54 10.71 -148.98 -1.59 -13.13 16 19 C 0.08 2.44 6.70 72.04 0.48 2.92 16 20 C -0.10 -3.63 5.36 29.81 0.16 -3.47 16 21 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 22 H 0.10 2.84 5.91 -2.38 -0.01 2.82 16 23 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.28 13.73 8.29 -92.71 -0.77 12.96 16 25 H 0.09 2.48 5.83 -2.39 -0.01 2.46 16 26 H 0.06 2.01 8.02 -2.39 -0.02 1.99 16 27 H 0.05 1.51 5.40 -2.39 -0.01 1.49 16 28 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.12 2.79 8.14 -2.38 -0.02 2.77 16 30 H 0.04 1.23 7.73 -2.39 -0.02 1.21 16 31 H 0.10 3.26 5.95 -2.39 -0.01 3.24 16 32 H 0.08 2.94 8.09 -2.39 -0.02 2.92 16 Total: -1.00 -69.89 260.50 2.61 -67.28 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 1.14 Total: 17.17 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 4.07 Total: -2.81 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -3.04 Total: -109.45 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -1.59 Total: -13.13 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -69.89 2.61 -67.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260490929.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.780 kcal (2) G-P(sol) polarization free energy of solvation -69.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds