Wall clock time and date at job start Mon Mar 30 2020 03:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36913 * 119.99878 * 2 1 4 4 H 1.07998 * 120.00009 * 154.38106 * 3 2 1 5 5 C 1.38816 * 120.00013 * 334.10639 * 3 2 1 6 6 N 1.31562 * 120.00066 * 349.34680 * 5 3 2 7 7 Si 1.86803 * 119.99883 * 169.34098 * 5 3 2 8 8 H 1.48504 * 109.47284 * 90.00099 * 7 5 3 9 9 H 1.48502 * 109.46937 * 210.00150 * 7 5 3 10 10 H 1.48503 * 109.47208 * 329.99907 * 7 5 3 11 11 C 1.38834 * 120.00069 * 180.02562 * 2 1 3 12 12 C 1.39232 * 119.76512 * 185.00230 * 11 2 1 13 13 C 1.38387 * 119.02665 * 179.97438 * 12 11 2 14 14 C 1.38381 * 118.76409 * 359.83875 * 13 12 11 15 15 C 1.38402 * 119.16373 * 0.23405 * 14 13 12 16 16 N 1.31821 * 120.90175 * 359.58788 * 15 14 13 17 17 C 1.50526 * 121.40630 * 180.32158 * 14 13 12 18 18 O 1.42795 * 110.12264 * 343.76334 * 17 14 13 19 19 C 1.43184 * 113.28728 * 51.88833 * 18 17 14 20 20 C 1.50467 * 119.67691 * 179.55440 * 13 12 11 21 21 H 1.09000 * 109.46829 * 91.08392 * 1 2 3 22 22 H 1.08999 * 109.47329 * 211.08430 * 1 2 3 23 23 H 1.09000 * 109.47500 * 331.08611 * 1 2 3 24 24 H 0.97005 * 119.99689 * 180.02562 * 6 5 3 25 25 H 1.08002 * 120.48679 * 359.96056 * 12 11 2 26 26 H 1.08009 * 119.54598 * 179.87073 * 15 14 13 27 27 H 1.09002 * 109.35843 * 103.96060 * 17 14 13 28 28 H 1.08992 * 109.35984 * 223.55777 * 17 14 13 29 29 H 1.09001 * 109.62348 * 49.04999 * 19 18 17 30 30 H 1.09002 * 109.62131 * 169.41039 * 19 18 17 31 31 H 1.08995 * 109.44412 * 283.49373 * 20 13 12 32 32 H 1.09003 * 109.43792 * 43.37906 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1857 0.0000 4 1 3.1499 1.2317 0.4044 5 6 1.5600 2.3275 -0.5250 6 7 0.4392 2.2347 -1.2078 7 14 2.3578 3.9960 -0.2619 8 1 3.3027 4.2737 -1.3734 9 1 1.3089 5.0467 -0.2296 10 1 3.0962 3.9939 1.0266 11 6 2.1592 -1.2023 -0.0005 12 6 3.5475 -1.1989 0.1049 13 6 4.2240 -2.4062 0.1033 14 6 3.4949 -3.5779 0.0002 15 6 2.1165 -3.5077 -0.1029 16 7 1.4954 -2.3450 -0.0957 17 6 4.1691 -4.9237 -0.0002 18 8 5.5649 -4.7739 -0.2616 19 6 6.2022 -3.8203 0.5956 20 6 5.7250 -2.4192 0.2063 21 1 -0.3633 -0.0194 -1.0275 22 1 -0.3634 -0.8801 0.5306 23 1 -0.3634 0.8995 0.4969 24 1 0.0275 3.0326 -1.5749 25 1 4.0886 -0.2678 0.1864 26 1 1.5416 -4.4183 -0.1858 27 1 4.0323 -5.3967 0.9723 28 1 3.7223 -5.5514 -0.7711 29 1 5.9338 -4.0232 1.6324 30 1 7.2837 -3.8875 0.4777 31 1 6.1571 -2.1429 -0.7554 32 1 6.0428 -1.7040 0.9650 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260593524.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:46 Heat of formation + Delta-G solvation = -16.198459 kcal Electronic energy + Delta-G solvation = -16319.373170 eV Core-core repulsion = 13665.383930 eV Total energy + Delta-G solvation = -2653.989240 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.36933 -39.30451 -37.45450 -34.42822 -33.90531 -31.90898 -30.73095 -28.37118 -26.90193 -25.44256 -24.03210 -23.46274 -20.96248 -19.22617 -18.19132 -17.60555 -17.15448 -16.47742 -16.15114 -15.91129 -15.52511 -15.28059 -15.12905 -14.39577 -13.98275 -13.87937 -13.55776 -13.16947 -13.05270 -13.00982 -12.69304 -12.44435 -12.22030 -12.11703 -11.71927 -11.25272 -10.71918 -10.38804 -10.13037 -9.94164 -8.63162 -8.28846 -5.88503 0.64158 0.71907 1.39638 1.43885 1.53057 2.20732 2.84353 2.96147 3.06729 3.30559 3.81035 3.94022 4.12444 4.19415 4.39932 4.41929 4.55019 4.67011 4.70524 4.83277 4.91337 4.93465 4.96677 5.06614 5.17018 5.25622 5.34256 5.37384 5.66976 5.89854 6.18335 6.28207 6.59104 7.18803 7.32418 7.86624 8.66589 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.036899 B = 0.007080 C = 0.006070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.642044 B = 3953.621053 C = 4611.486014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.154 3.846 2 N -0.454 5.454 3 C -0.334 4.334 4 H 0.097 0.903 5 C -0.015 4.015 6 N -0.905 5.905 7 Si 0.999 3.001 8 H -0.272 1.272 9 H -0.277 1.277 10 H -0.259 1.259 11 C 0.350 3.650 12 C -0.272 4.272 13 C 0.003 3.997 14 C -0.295 4.295 15 C 0.157 3.843 16 N -0.592 5.592 17 C 0.130 3.870 18 O -0.396 6.396 19 C 0.065 3.935 20 C -0.113 4.113 21 H 0.026 0.974 22 H 0.045 0.955 23 H 0.049 0.951 24 H 0.272 0.728 25 H 0.116 0.884 26 H 0.175 0.825 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.429 -8.676 3.984 12.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.146 5.146 3 C -0.462 4.462 4 H 0.115 0.885 5 C -0.216 4.216 6 N -0.542 5.542 7 Si 0.822 3.178 8 H -0.198 1.198 9 H -0.202 1.202 10 H -0.183 1.183 11 C 0.112 3.888 12 C -0.299 4.299 13 C -0.004 4.004 14 C -0.302 4.302 15 C -0.005 4.005 16 N -0.313 5.313 17 C 0.054 3.946 18 O -0.314 6.314 19 C -0.011 4.011 20 C -0.150 4.150 21 H 0.045 0.955 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.134 0.866 26 H 0.192 0.808 27 H 0.088 0.912 28 H 0.128 0.872 29 H 0.080 0.920 30 H 0.141 0.859 31 H 0.102 0.898 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.303 -8.266 3.685 11.629 hybrid contribution 0.385 1.358 0.031 1.412 sum 7.687 -6.909 3.715 10.983 Atomic orbital electron populations 1.20962 0.80153 0.98520 0.99377 1.42576 1.05006 1.01725 1.65342 1.19860 1.01950 0.85297 1.39081 0.88497 1.26349 0.97220 1.03702 0.94363 1.70207 1.19912 1.31009 1.33073 0.84840 0.77812 0.76042 0.79143 1.19765 1.20163 1.18348 1.18892 0.89288 0.86461 0.94115 1.21102 0.93115 0.98679 1.17009 1.19685 0.96610 0.91610 0.92516 1.20760 0.95385 0.96946 1.17144 1.22582 0.91727 0.94562 0.91624 1.67130 1.41348 0.98149 1.24630 1.21123 0.79960 0.91483 1.02076 1.87963 1.21814 1.61290 1.60364 1.22719 0.98725 0.85897 0.93800 1.21146 0.90010 1.00313 1.03578 0.95491 0.93658 0.93217 0.91878 0.86558 0.80826 0.91189 0.87227 0.91996 0.85922 0.89750 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 8.01 8.66 127.77 1.11 9.11 16 2 N -0.45 -24.70 3.11 -541.25 -1.68 -26.38 16 3 C -0.33 -18.12 9.02 84.04 0.76 -17.36 16 4 H 0.10 5.04 6.10 -2.91 -0.02 5.02 16 5 C -0.01 -0.78 5.10 84.87 0.43 -0.35 16 6 N -0.91 -50.08 10.80 21.65 0.23 -49.85 16 7 Si 1.00 41.02 29.57 68.60 2.03 43.04 16 8 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 9 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 10 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 11 C 0.35 17.69 7.33 133.12 0.98 18.67 16 12 C -0.27 -12.33 9.00 22.54 0.20 -12.12 16 13 C 0.00 0.12 5.78 -19.87 -0.11 0.00 16 14 C -0.29 -10.16 5.81 -19.85 -0.12 -10.27 16 15 C 0.16 5.84 10.85 84.73 0.92 6.76 16 16 N -0.59 -27.56 9.18 -193.06 -1.77 -29.33 16 17 C 0.13 3.38 6.70 71.18 0.48 3.85 16 18 O -0.40 -10.74 10.79 -148.98 -1.61 -12.35 16 19 C 0.06 1.47 6.85 72.00 0.49 1.96 16 20 C -0.11 -3.17 6.05 29.79 0.18 -2.99 16 21 H 0.03 1.48 7.64 -2.39 -0.02 1.46 16 22 H 0.04 2.19 7.48 -2.39 -0.02 2.17 16 23 H 0.05 2.62 7.06 -2.39 -0.02 2.60 16 24 H 0.27 14.10 8.31 -92.70 -0.77 13.32 16 25 H 0.12 5.30 6.14 -2.91 -0.02 5.28 16 26 H 0.17 4.94 8.06 -2.91 -0.02 4.91 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 28 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.06 1.29 8.07 -2.39 -0.02 1.27 16 30 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -64.59 265.48 3.64 -60.96 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 1.12 Total: 16.64 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 5.31 Total: -2.74 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -3.22 Total: -105.56 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -1.61 Total: -12.35 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Total: -64.59 3.64 -60.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260593524.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.759 kcal (2) G-P(sol) polarization free energy of solvation -64.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds