Wall clock time and date at job start Mon Mar 30 2020 03:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00148 * 2 1 4 4 C 1.50702 * 109.46863 * 270.00273 * 3 2 1 5 5 H 1.08005 * 120.00542 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99929 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00026 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00189 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47211 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47256 * 119.99318 * 8 6 4 11 11 H 1.48504 * 109.47179 * 239.99573 * 8 6 4 12 12 C 1.38997 * 119.99840 * 179.97438 * 2 1 3 13 13 C 1.39348 * 119.69495 * 4.99780 * 12 2 1 14 14 C 1.37711 * 118.79213 * 180.02562 * 13 12 2 15 15 C 1.39155 * 118.85582 * 0.02562 * 14 13 12 16 16 C 1.37626 * 119.36488 * 359.97438 * 15 14 13 17 17 N 1.32140 * 120.57930 * 0.02562 * 16 15 14 18 18 C 1.50930 * 107.14215 * 179.97438 * 15 14 13 19 19 O 1.44156 * 106.02256 * 17.60430 * 18 15 14 20 20 C 1.44007 * 104.97585 * 331.68375 * 19 18 15 21 21 H 1.08992 * 109.47327 * 269.99781 * 1 2 3 22 22 H 1.09001 * 109.47075 * 30.00896 * 1 2 3 23 23 H 1.09004 * 109.47023 * 149.99965 * 1 2 3 24 24 H 1.09003 * 109.47280 * 29.99448 * 3 2 1 25 25 H 1.08998 * 109.47528 * 149.99845 * 3 2 1 26 26 H 0.97006 * 120.00075 * 180.02562 * 7 6 4 27 27 H 1.07999 * 120.60053 * 0.04978 * 13 12 2 28 28 H 1.07996 * 119.71210 * 179.97438 * 16 15 14 29 29 H 1.08998 * 110.14647 * 136.72741 * 18 15 14 30 30 H 1.09000 * 110.14221 * 258.46579 * 18 15 14 31 31 H 1.09002 * 110.15610 * 269.13709 * 20 19 18 32 32 H 1.09004 * 110.15146 * 147.45127 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0980 1.0957 -2.2418 6 6 3.1269 2.8773 -1.6728 7 7 3.5543 3.6175 -0.6732 8 14 3.4388 3.4163 -3.4340 9 1 2.8617 2.4158 -4.3674 10 1 2.8016 4.7371 -3.6677 11 1 4.9014 3.5240 -3.6671 12 6 2.1600 -1.2038 0.0005 13 6 1.4608 -2.4046 -0.1044 14 6 2.1679 -3.5863 -0.1014 15 6 3.5544 -3.5389 0.0067 16 6 4.1822 -2.3183 0.1070 17 7 3.4802 -1.1988 0.1018 18 6 4.0513 -4.9639 -0.0163 19 8 2.9713 -5.7533 -0.5534 20 6 1.7737 -5.0387 -0.1943 21 1 -0.3633 0.0000 1.0276 22 1 -0.3633 0.8899 -0.5140 23 1 -0.3633 -0.8900 -0.5139 24 1 1.6084 2.0284 0.5138 25 1 3.1499 1.1384 0.5138 26 1 4.0311 4.4434 -0.8505 27 1 0.3839 -2.4083 -0.1869 28 1 5.2580 -2.2751 0.1916 29 1 4.9296 -5.0449 -0.6567 30 1 4.2910 -5.2942 0.9944 31 1 1.4016 -5.3892 0.7685 32 1 1.0119 -5.1727 -0.9623 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260607163.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:47 Heat of formation + Delta-G solvation = 13.685666 kcal Electronic energy + Delta-G solvation = -16077.007342 eV Core-core repulsion = 13424.313974 eV Total energy + Delta-G solvation = -2652.693368 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.61027 -38.22615 -35.64605 -32.71077 -32.10524 -30.50259 -28.28928 -27.49062 -25.77575 -24.10907 -22.78105 -21.59049 -20.07937 -16.88254 -16.60268 -16.39820 -16.08873 -15.53634 -14.78802 -14.30946 -14.29100 -14.11935 -13.27572 -12.99736 -12.81691 -12.44893 -12.20274 -12.06870 -11.61270 -11.24379 -11.12475 -10.85585 -10.59197 -10.24757 -10.14381 -9.74044 -9.08317 -8.93341 -8.77207 -8.43664 -6.81252 -6.02709 -4.10032 1.69384 1.79904 3.27954 3.35671 3.39884 3.72744 4.01339 4.33480 4.43386 4.53691 4.84397 5.08483 5.28316 5.32336 5.37432 5.50970 5.57362 5.64953 5.75980 5.79501 5.92232 6.11013 6.20442 6.27401 6.46551 6.68542 6.92192 7.09985 7.46501 7.80170 7.93222 8.22177 8.23921 8.81522 8.97136 9.54557 11.02211 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.034090 B = 0.006413 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.168047 B = 4365.192028 C = 4674.959846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.588 5.588 3 C 0.251 3.749 4 C -0.524 4.524 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.427 3.573 13 C -0.233 4.233 14 C -0.052 4.052 15 C -0.285 4.285 16 C 0.185 3.815 17 N -0.519 5.519 18 C 0.112 3.888 19 O -0.368 6.368 20 C 0.094 3.906 21 H 0.043 0.957 22 H 0.076 0.924 23 H 0.058 0.942 24 H 0.029 0.971 25 H 0.052 0.948 26 H 0.262 0.738 27 H 0.129 0.871 28 H 0.150 0.850 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.615 -13.445 2.658 14.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.295 5.295 3 C 0.131 3.869 4 C -0.563 4.563 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.189 3.811 13 C -0.259 4.259 14 C -0.060 4.060 15 C -0.291 4.291 16 C 0.025 3.975 17 N -0.236 5.236 18 C 0.035 3.965 19 O -0.287 6.287 20 C 0.018 3.982 21 H 0.062 0.938 22 H 0.094 0.906 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.146 0.854 28 H 0.167 0.833 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.238 -12.415 2.647 13.100 hybrid contribution -0.239 -0.085 -0.974 1.007 sum -3.477 -12.500 1.673 13.082 Atomic orbital electron populations 1.21619 0.80245 1.02581 1.00359 1.47088 1.04691 1.04516 1.73250 1.19355 0.92650 0.77499 0.97356 1.21495 1.36240 1.06178 0.92369 0.92620 1.24917 0.95428 0.96380 0.97294 1.69944 1.38517 1.14341 1.30581 0.86475 0.78074 0.78325 0.84739 1.19908 1.20969 1.20857 1.18411 0.88261 0.86012 0.88402 1.20561 1.00524 0.90419 1.14352 1.20821 0.94696 0.95070 0.95388 1.21450 0.95549 0.96576 1.15531 1.21628 0.99314 0.85240 0.91326 1.67537 1.06377 1.29486 1.20183 1.21428 0.90458 0.85910 0.98678 1.89069 1.15235 1.45973 1.78385 1.21624 0.88856 0.86624 1.01100 0.93823 0.90578 0.92353 0.95321 0.93015 0.92794 0.85351 0.83302 0.89291 0.91578 0.90579 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.59 10.28 59.85 0.62 2.21 16 2 N -0.59 -12.72 2.97 -183.03 -0.54 -13.26 16 3 C 0.25 6.50 5.22 -5.19 -0.03 6.47 16 4 C -0.52 -14.75 9.39 -34.44 -0.32 -15.08 16 5 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.80 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 12 C 0.43 8.92 7.38 -154.93 -1.14 7.78 16 13 C -0.23 -4.00 9.26 -39.36 -0.36 -4.37 16 14 C -0.05 -0.82 6.38 -104.43 -0.67 -1.49 16 15 C -0.28 -4.52 6.37 -104.39 -0.66 -5.19 16 16 C 0.18 3.28 11.18 -17.64 -0.20 3.08 16 17 N -0.52 -11.32 9.07 -12.45 -0.11 -11.44 16 18 C 0.11 1.45 7.63 36.12 0.28 1.72 16 19 O -0.37 -5.17 11.73 -35.23 -0.41 -5.59 16 20 C 0.09 1.19 7.62 36.05 0.27 1.47 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 23 H 0.06 0.83 5.98 -51.93 -0.31 0.51 16 24 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 25 H 0.05 1.47 7.30 -51.93 -0.38 1.09 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.13 1.87 6.04 -52.49 -0.32 1.55 16 28 H 0.15 2.19 8.06 -52.49 -0.42 1.76 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 274.45 15.07 4.14 4.14 Total: -1.00 -31.90 274.45 -7.46 -39.36 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -3.93 Total: -2.66 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -2.32 Total: -1.74 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.08 Total: -50.31 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.41 Total: -5.59 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.90 -7.46 -39.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260607163.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.045 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds