Wall clock time and date at job start Mon Mar 30 2020 03:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00148 * 2 1 4 4 C 1.50702 * 109.46863 * 270.00273 * 3 2 1 5 5 H 1.08005 * 120.00542 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99929 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00026 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00189 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47211 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47256 * 119.99318 * 8 6 4 11 11 H 1.48504 * 109.47179 * 239.99573 * 8 6 4 12 12 C 1.38997 * 119.99840 * 179.97438 * 2 1 3 13 13 C 1.39348 * 119.69495 * 4.99780 * 12 2 1 14 14 C 1.37711 * 118.79213 * 180.02562 * 13 12 2 15 15 C 1.39155 * 118.85582 * 0.02562 * 14 13 12 16 16 C 1.37626 * 119.36488 * 359.97438 * 15 14 13 17 17 N 1.32140 * 120.57930 * 0.02562 * 16 15 14 18 18 C 1.50930 * 107.14215 * 179.97438 * 15 14 13 19 19 O 1.44156 * 106.02256 * 17.60430 * 18 15 14 20 20 C 1.44007 * 104.97585 * 331.68375 * 19 18 15 21 21 H 1.08992 * 109.47327 * 269.99781 * 1 2 3 22 22 H 1.09001 * 109.47075 * 30.00896 * 1 2 3 23 23 H 1.09004 * 109.47023 * 149.99965 * 1 2 3 24 24 H 1.09003 * 109.47280 * 29.99448 * 3 2 1 25 25 H 1.08998 * 109.47528 * 149.99845 * 3 2 1 26 26 H 0.97006 * 120.00075 * 180.02562 * 7 6 4 27 27 H 1.07999 * 120.60053 * 0.04978 * 13 12 2 28 28 H 1.07996 * 119.71210 * 179.97438 * 16 15 14 29 29 H 1.08998 * 110.14647 * 136.72741 * 18 15 14 30 30 H 1.09000 * 110.14221 * 258.46579 * 18 15 14 31 31 H 1.09002 * 110.15610 * 269.13709 * 20 19 18 32 32 H 1.09004 * 110.15146 * 147.45127 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0980 1.0957 -2.2418 6 6 3.1269 2.8773 -1.6728 7 7 3.5543 3.6175 -0.6732 8 14 3.4388 3.4163 -3.4340 9 1 2.8617 2.4158 -4.3674 10 1 2.8016 4.7371 -3.6677 11 1 4.9014 3.5240 -3.6671 12 6 2.1600 -1.2038 0.0005 13 6 1.4608 -2.4046 -0.1044 14 6 2.1679 -3.5863 -0.1014 15 6 3.5544 -3.5389 0.0067 16 6 4.1822 -2.3183 0.1070 17 7 3.4802 -1.1988 0.1018 18 6 4.0513 -4.9639 -0.0163 19 8 2.9713 -5.7533 -0.5534 20 6 1.7737 -5.0387 -0.1943 21 1 -0.3633 0.0000 1.0276 22 1 -0.3633 0.8899 -0.5140 23 1 -0.3633 -0.8900 -0.5139 24 1 1.6084 2.0284 0.5138 25 1 3.1499 1.1384 0.5138 26 1 4.0311 4.4434 -0.8505 27 1 0.3839 -2.4083 -0.1869 28 1 5.2580 -2.2751 0.1916 29 1 4.9296 -5.0449 -0.6567 30 1 4.2910 -5.2942 0.9944 31 1 1.4016 -5.3892 0.7685 32 1 1.0119 -5.1727 -0.9623 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260607163.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:46 Heat of formation + Delta-G solvation = -6.992289 kcal Electronic energy + Delta-G solvation = -16077.904005 eV Core-core repulsion = 13424.313974 eV Total energy + Delta-G solvation = -2653.590031 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.87233 -39.50764 -37.17437 -34.77700 -33.41932 -31.85631 -29.97206 -28.75323 -27.31740 -25.51534 -24.52766 -22.80903 -21.56526 -18.68204 -18.12311 -17.94058 -17.19487 -16.81559 -16.51073 -15.81557 -15.68216 -15.45001 -14.88890 -14.32627 -14.14891 -13.93941 -13.53743 -13.33514 -13.20639 -13.02394 -12.73807 -12.54791 -12.31005 -12.15830 -11.75138 -11.32622 -10.64016 -10.57886 -10.22432 -10.14693 -8.47674 -8.05021 -6.34534 0.37247 0.44230 1.35069 1.36749 1.48537 2.22599 2.41038 2.95349 3.00242 3.08475 3.36470 3.64673 3.78209 4.14176 4.30892 4.43706 4.47509 4.57173 4.61692 4.67406 4.75971 4.80163 4.92038 5.00142 5.08159 5.26255 5.26857 5.56484 5.68247 5.80586 6.07276 6.24251 6.56960 6.79165 7.32981 7.44797 8.86027 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.034090 B = 0.006413 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.168047 B = 4365.192028 C = 4674.959846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.608 5.608 3 C 0.271 3.729 4 C -0.535 4.535 5 H 0.045 0.955 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.963 3.037 9 H -0.272 1.272 10 H -0.271 1.271 11 H -0.279 1.279 12 C 0.396 3.604 13 C -0.227 4.227 14 C -0.057 4.057 15 C -0.276 4.276 16 C 0.164 3.836 17 N -0.571 5.571 18 C 0.114 3.886 19 O -0.379 6.379 20 C 0.098 3.902 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.012 0.988 25 H 0.015 0.985 26 H 0.266 0.734 27 H 0.156 0.844 28 H 0.168 0.832 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 -15.674 1.871 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.317 5.317 3 C 0.149 3.851 4 C -0.574 4.574 5 H 0.063 0.937 6 C -0.188 4.188 7 N -0.568 5.568 8 Si 0.788 3.212 9 H -0.197 1.197 10 H -0.196 1.196 11 H -0.205 1.205 12 C 0.160 3.840 13 C -0.252 4.252 14 C -0.065 4.065 15 C -0.282 4.282 16 C 0.006 3.994 17 N -0.289 5.289 18 C 0.037 3.963 19 O -0.298 6.298 20 C 0.022 3.978 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.104 0.896 24 H 0.030 0.970 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.173 0.827 28 H 0.185 0.815 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.121 0.879 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.896 -14.697 1.867 15.319 hybrid contribution 0.007 0.466 -0.676 0.821 sum -3.889 -14.231 1.191 14.801 Atomic orbital electron populations 1.21793 0.77635 1.03452 1.01875 1.46946 1.06200 1.03376 1.75222 1.18728 0.91314 0.79417 0.95609 1.21708 1.36300 1.06271 0.93092 0.93684 1.25772 0.95091 0.96425 1.01537 1.70054 1.39150 1.14822 1.32733 0.85433 0.77965 0.78232 0.79534 1.19681 1.19594 1.20485 1.18753 0.88462 0.86791 0.90020 1.20718 1.01791 0.89447 1.13263 1.21324 0.94724 0.96505 0.93987 1.21862 0.96077 0.97497 1.12795 1.21966 1.00230 0.85292 0.91925 1.67432 1.07694 1.31991 1.21765 1.21591 0.90623 0.83529 1.00511 1.89071 1.15829 1.46080 1.78810 1.21830 0.88792 0.83904 1.03303 0.91918 0.91545 0.89570 0.97038 0.96659 0.92464 0.82694 0.81461 0.87656 0.89157 0.87893 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.11 10.28 127.77 1.31 4.42 16 2 N -0.61 -26.90 2.97 -732.99 -2.18 -29.08 16 3 C 0.27 14.74 5.22 85.63 0.45 15.19 16 4 C -0.53 -31.07 9.39 25.60 0.24 -30.83 16 5 H 0.04 2.65 7.81 -2.91 -0.02 2.62 16 6 C 0.01 0.61 5.46 84.65 0.46 1.07 16 7 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 8 Si 0.96 45.29 29.54 68.60 2.03 47.31 16 9 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 C 0.40 16.70 7.38 133.11 0.98 17.68 16 13 C -0.23 -7.42 9.26 22.41 0.21 -7.21 16 14 C -0.06 -1.66 6.38 -19.74 -0.13 -1.79 16 15 C -0.28 -8.23 6.37 -19.72 -0.13 -8.36 16 16 C 0.16 5.79 11.18 84.50 0.94 6.73 16 17 N -0.57 -25.64 9.07 -193.29 -1.75 -27.39 16 18 C 0.11 2.55 7.63 71.31 0.54 3.09 16 19 O -0.38 -9.16 11.73 -148.98 -1.75 -10.91 16 20 C 0.10 2.06 7.62 71.26 0.54 2.60 16 21 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 23 H 0.09 2.27 5.98 -2.38 -0.01 2.26 16 24 H 0.01 0.65 8.07 -2.39 -0.02 0.63 16 25 H 0.02 0.93 7.30 -2.39 -0.02 0.91 16 26 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 27 H 0.16 4.06 6.04 -2.91 -0.02 4.04 16 28 H 0.17 4.93 8.06 -2.91 -0.02 4.90 16 29 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -70.90 274.45 3.18 -67.72 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.12 Total: 5.53 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 5.43 Total: 2.61 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -3.65 Total: -112.26 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.75 Total: -10.91 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -70.90 3.18 -67.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260607163.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.724 kcal (2) G-P(sol) polarization free energy of solvation -70.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds