Wall clock time and date at job start Mon Mar 30 2020 03:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99449 * 2 1 4 4 C 1.50702 * 109.47314 * 269.99826 * 3 2 1 5 5 H 1.08003 * 119.99910 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99766 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00584 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99548 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47144 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47265 * 120.00167 * 8 6 4 11 11 H 1.48499 * 109.46849 * 240.00010 * 8 6 4 12 12 C 1.38996 * 120.00191 * 180.02562 * 2 1 3 13 13 C 1.39142 * 119.63605 * 4.97530 * 12 2 1 14 14 C 1.38417 * 119.02773 * 180.02562 * 13 12 2 15 15 C 1.38458 * 118.38432 * 359.97438 * 14 13 12 16 16 C 1.38412 * 119.66963 * 0.02562 * 15 14 13 17 17 N 1.31868 * 120.55944 * 0.02562 * 16 15 14 18 18 C 1.51236 * 107.10578 * 180.02562 * 16 15 14 19 19 O 1.43921 * 105.99475 * 342.22091 * 18 16 15 20 20 C 1.43960 * 104.91047 * 28.48973 * 19 18 16 21 21 H 1.09001 * 109.46974 * 269.99228 * 1 2 3 22 22 H 1.09001 * 109.47630 * 29.99863 * 1 2 3 23 23 H 1.09002 * 109.46701 * 150.00185 * 1 2 3 24 24 H 1.08995 * 109.47696 * 30.00476 * 3 2 1 25 25 H 1.09005 * 109.46850 * 150.00398 * 3 2 1 26 26 H 0.96995 * 120.00230 * 179.97438 * 7 6 4 27 27 H 1.08006 * 120.48579 * 0.02908 * 13 12 2 28 28 H 1.08001 * 120.80751 * 179.97438 * 14 13 12 29 29 H 1.09006 * 110.13009 * 223.10103 * 18 16 15 30 30 H 1.08993 * 110.16412 * 101.36484 * 18 16 15 31 31 H 1.09001 * 110.15905 * 212.48477 * 20 19 18 32 32 H 1.08996 * 110.22846 * 90.73861 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1267 2.8777 -1.6727 7 7 3.5548 3.6173 -0.6731 8 14 3.4374 3.4173 -3.4338 9 1 2.8596 2.4172 -4.3672 10 1 2.8004 4.7383 -3.6665 11 1 4.8999 3.5249 -3.6678 12 6 2.1600 -1.2037 -0.0005 13 6 1.4607 -2.4020 -0.1060 14 6 2.1654 -3.5933 -0.1047 15 6 3.5449 -3.5419 0.0016 16 6 4.1790 -2.3158 0.1033 17 7 3.4804 -1.1974 0.1003 18 6 5.6631 -2.5894 0.2025 19 8 5.7871 -3.9741 0.5746 20 6 4.6124 -4.6089 0.0366 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6084 2.0284 0.5139 25 1 3.1499 1.1385 0.5138 26 1 4.0322 4.4428 -0.8503 27 1 0.3837 -2.4025 -0.1877 28 1 1.6517 -4.5400 -0.1846 29 1 6.1116 -1.9538 0.9661 30 1 6.1425 -2.4151 -0.7608 31 1 4.3010 -5.4309 0.6812 32 1 4.8101 -4.9759 -0.9705 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260618367.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:49 Heat of formation + Delta-G solvation = -5.976362 kcal Electronic energy + Delta-G solvation = -16169.657331 eV Core-core repulsion = 13516.111354 eV Total energy + Delta-G solvation = -2653.545977 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.88471 -39.50090 -37.06653 -34.75685 -33.61471 -31.73052 -29.92147 -29.12468 -27.18395 -25.90961 -23.78510 -22.81090 -21.88165 -18.68362 -18.11569 -17.96538 -17.28477 -17.04443 -16.54389 -15.80073 -15.57465 -14.97169 -14.68218 -14.47032 -14.12104 -13.96304 -13.61193 -13.31766 -13.24293 -13.08174 -12.81352 -12.62696 -12.39829 -12.13776 -11.80402 -11.28451 -10.68319 -10.63844 -10.23227 -10.01919 -8.45899 -8.03777 -6.35237 0.28692 0.57706 1.34370 1.35927 1.47808 2.19806 2.38825 2.91806 2.98493 3.06059 3.07994 3.64505 4.09733 4.14518 4.26365 4.39587 4.45614 4.58789 4.62887 4.67825 4.74831 4.82734 4.91965 5.01807 5.12739 5.22325 5.28997 5.59668 5.65519 5.78315 6.06906 6.24117 6.57229 6.78910 7.31834 7.42384 8.85681 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.025775 B = 0.007559 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.043384 B = 3703.350638 C = 4339.091439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.610 5.610 3 C 0.271 3.729 4 C -0.534 4.534 5 H 0.046 0.954 6 C 0.010 3.990 7 N -0.928 5.928 8 Si 0.964 3.036 9 H -0.271 1.271 10 H -0.271 1.271 11 H -0.280 1.280 12 C 0.395 3.605 13 C -0.252 4.252 14 C 0.000 4.000 15 C -0.275 4.275 16 C 0.109 3.891 17 N -0.560 5.560 18 C 0.106 3.894 19 O -0.371 6.371 20 C 0.109 3.891 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.089 0.911 24 H 0.010 0.990 25 H 0.012 0.988 26 H 0.266 0.734 27 H 0.162 0.838 28 H 0.176 0.824 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.492 -15.530 0.269 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.320 5.320 3 C 0.149 3.851 4 C -0.573 4.573 5 H 0.064 0.936 6 C -0.189 4.189 7 N -0.568 5.568 8 Si 0.789 3.211 9 H -0.195 1.195 10 H -0.196 1.196 11 H -0.205 1.205 12 C 0.160 3.840 13 C -0.277 4.277 14 C -0.025 4.025 15 C -0.281 4.281 16 C -0.032 4.032 17 N -0.278 5.278 18 C 0.028 3.972 19 O -0.289 6.289 20 C 0.033 3.967 21 H 0.079 0.921 22 H 0.084 0.916 23 H 0.107 0.893 24 H 0.028 0.972 25 H 0.030 0.970 26 H 0.075 0.925 27 H 0.180 0.820 28 H 0.193 0.807 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.136 0.864 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.960 -14.452 0.512 14.761 hybrid contribution -0.212 0.465 -0.866 1.005 sum -3.172 -13.987 -0.354 14.346 Atomic orbital electron populations 1.21789 0.77451 1.03535 1.01809 1.46968 1.06200 1.03377 1.75466 1.18699 0.91196 0.79592 0.95616 1.21709 1.36285 1.06269 0.93058 0.93572 1.25792 0.95099 0.96431 1.01598 1.70053 1.39113 1.14856 1.32798 0.85425 0.77944 0.78279 0.79481 1.19518 1.19586 1.20535 1.18682 0.87510 0.87356 0.90454 1.21668 1.02168 0.90809 1.13101 1.20866 0.91165 0.98894 0.91550 1.21846 0.96616 0.97059 1.12561 1.22283 0.97947 0.88729 0.94287 1.66119 1.07941 1.32376 1.21365 1.21573 0.89213 0.83761 1.02634 1.89054 1.42405 1.19167 1.78247 1.21638 0.80942 0.93323 1.00763 0.92085 0.91632 0.89257 0.97206 0.97012 0.92479 0.82043 0.80656 0.87975 0.88791 0.86409 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.15 10.28 127.77 1.31 4.46 16 2 N -0.61 -27.17 2.97 -733.18 -2.18 -29.35 16 3 C 0.27 14.89 5.22 85.63 0.45 15.33 16 4 C -0.53 -31.16 9.39 25.60 0.24 -30.92 16 5 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 6 C 0.01 0.55 5.46 84.66 0.46 1.02 16 7 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 8 Si 0.96 45.32 29.54 68.60 2.03 47.34 16 9 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 C 0.39 16.73 7.37 133.06 0.98 17.71 16 13 C -0.25 -7.91 9.28 22.53 0.21 -7.70 16 14 C 0.00 0.01 10.16 22.36 0.23 0.23 16 15 C -0.27 -8.17 6.34 -19.69 -0.12 -8.29 16 16 C 0.11 4.13 7.50 42.76 0.32 4.45 16 17 N -0.56 -25.87 9.07 -180.56 -1.64 -27.51 16 18 C 0.11 3.33 7.63 71.41 0.54 3.87 16 19 O -0.37 -10.52 11.72 -148.98 -1.75 -12.27 16 20 C 0.11 2.51 7.63 71.32 0.54 3.05 16 21 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.06 2.22 8.07 -2.39 -0.02 2.20 16 23 H 0.09 2.30 5.97 -2.39 -0.01 2.28 16 24 H 0.01 0.57 8.07 -2.39 -0.02 0.55 16 25 H 0.01 0.73 7.30 -2.38 -0.02 0.71 16 26 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 27 H 0.16 3.94 6.02 -2.91 -0.02 3.92 16 28 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 29 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 30 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -72.33 274.48 3.03 -69.30 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 1.12 Total: 5.44 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 5.16 Total: 3.22 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -3.53 Total: -113.04 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -1.75 Total: -12.27 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -72.33 3.03 -69.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260618367.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.326 kcal (2) G-P(sol) polarization free energy of solvation -72.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds