Wall clock time and date at job start Mon Mar 30 2020 03:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46984 * 2 1 4 4 C 1.50695 * 109.47095 * 120.00129 * 2 1 3 5 5 H 1.08006 * 119.99997 * 120.00199 * 4 2 1 6 6 C 1.37875 * 120.00234 * 299.99911 * 4 2 1 7 7 N 1.31510 * 119.99740 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00160 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46745 * 90.00070 * 8 6 4 10 10 H 1.48494 * 109.47157 * 210.00028 * 8 6 4 11 11 H 1.48495 * 109.47283 * 330.00140 * 8 6 4 12 12 C 1.50708 * 109.46987 * 240.00329 * 2 1 3 13 13 N 1.32330 * 120.43678 * 299.94719 * 12 2 1 14 14 C 1.32305 * 120.70995 * 180.02562 * 13 12 2 15 15 O 1.35461 * 119.16906 * 180.02562 * 14 13 12 16 16 N 1.32304 * 121.66015 * 0.02562 * 14 13 12 17 17 C 1.32392 * 120.75701 * 0.02562 * 16 14 13 18 18 C 1.38462 * 119.06911 * 0.02562 * 17 16 14 19 19 C 1.51077 * 109.86179 * 179.97438 * 18 17 16 20 20 C 1.54416 * 105.23994 * 342.90405 * 19 18 17 21 21 C 1.51189 * 131.23159 * 180.02562 * 17 16 14 22 22 H 1.08999 * 109.46994 * 299.99527 * 1 2 3 23 23 H 1.09004 * 109.47105 * 59.99785 * 1 2 3 24 24 H 1.09006 * 109.46937 * 179.97438 * 1 2 3 25 25 H 0.97006 * 120.00360 * 179.97438 * 7 6 4 26 26 H 0.96702 * 113.99618 * 269.97335 * 15 14 13 27 27 H 1.09002 * 110.30896 * 101.87693 * 19 18 17 28 28 H 1.08997 * 110.30539 * 223.93767 * 19 18 17 29 29 H 1.09004 * 110.80924 * 144.44032 * 20 19 18 30 30 H 1.08999 * 110.81310 * 267.95948 * 20 19 18 31 31 H 1.09001 * 110.29859 * 315.99427 * 21 17 16 32 32 H 1.09008 * 110.30191 * 78.03022 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.6297 -0.5460 4.4123 10 1 1.3432 -0.9494 5.1119 11 1 2.4858 -2.5663 3.7119 12 6 2.0323 -0.7104 -1.2306 13 7 1.7188 -1.9775 -1.4481 14 6 2.1572 -2.6065 -2.5263 15 8 1.8168 -3.9035 -2.7182 16 7 2.9198 -2.0007 -3.4218 17 6 3.2718 -0.7340 -3.2654 18 6 2.8310 -0.0464 -2.1474 19 6 3.3519 1.3714 -2.1783 20 6 4.5089 1.3565 -3.2009 21 6 4.1191 0.1780 -4.1234 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7081 1.1608 3.4844 26 1 2.4395 -4.5348 -2.3324 27 1 2.5681 2.0554 -2.5038 28 1 3.7206 1.6604 -1.1942 29 1 4.5442 2.2920 -3.7592 30 1 5.4607 1.1634 -2.7060 31 1 5.0122 -0.3456 -4.4645 32 1 3.5434 0.5373 -4.9765 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260737901.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:05 Heat of formation + Delta-G solvation = -26.560643 kcal Electronic energy + Delta-G solvation = -16439.089146 eV Core-core repulsion = 13784.650567 eV Total energy + Delta-G solvation = -2654.438578 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.42898 -39.05535 -37.39211 -36.28909 -34.38943 -32.17334 -30.22629 -28.76813 -27.28861 -25.33433 -23.77248 -22.52631 -21.13062 -19.66230 -19.20378 -18.00484 -17.31043 -16.73084 -16.22623 -15.54887 -15.05552 -14.69735 -14.41269 -14.28816 -13.81670 -13.51518 -13.30761 -12.90833 -12.87713 -12.82303 -12.44743 -12.28851 -12.10351 -12.00623 -11.92776 -11.71702 -11.39269 -10.93059 -10.51196 -9.93651 -9.78577 -8.14283 -6.26549 -0.12539 0.15145 1.39144 1.41418 1.51256 2.04412 2.40378 2.71063 3.07986 3.15354 3.56785 3.63676 3.88926 4.17555 4.24421 4.35699 4.72235 4.78812 4.80297 4.81378 4.92871 5.04686 5.08225 5.12443 5.22140 5.36287 5.42382 5.50181 5.71987 5.91732 6.02306 6.24933 6.56985 6.75152 7.14373 7.39327 8.90816 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.024528 B = 0.008695 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.262937 B = 3219.510029 C = 3769.565686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.084 3.916 3 H 0.042 0.958 4 C -0.516 4.516 5 H 0.039 0.961 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.954 3.046 9 H -0.270 1.270 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.220 3.780 13 N -0.542 5.542 14 C 0.469 3.531 15 O -0.466 6.466 16 N -0.548 5.548 17 C 0.168 3.832 18 C -0.230 4.230 19 C -0.072 4.072 20 C -0.102 4.102 21 C -0.062 4.062 22 H 0.071 0.929 23 H 0.022 0.978 24 H 0.023 0.977 25 H 0.265 0.735 26 H 0.424 0.576 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.524 1.505 -10.845 13.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.065 3.935 3 H 0.060 0.940 4 C -0.554 4.554 5 H 0.057 0.943 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.780 3.220 9 H -0.196 1.196 10 H -0.204 1.204 11 H -0.204 1.204 12 C 0.077 3.923 13 N -0.268 5.268 14 C 0.164 3.836 15 O -0.271 6.271 16 N -0.275 5.275 17 C 0.022 3.978 18 C -0.234 4.234 19 C -0.110 4.110 20 C -0.140 4.140 21 C -0.100 4.100 22 H 0.090 0.910 23 H 0.041 0.959 24 H 0.042 0.958 25 H 0.075 0.925 26 H 0.285 0.715 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.139 0.861 30 H 0.101 0.899 31 H 0.124 0.876 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.678 0.746 -11.146 13.014 hybrid contribution 0.288 -0.446 1.531 1.620 sum 6.965 0.301 -9.615 11.877 Atomic orbital electron populations 1.21550 0.96910 0.99059 1.00020 1.17834 0.93504 0.94456 0.87687 0.93993 1.21026 1.31605 1.11917 0.90855 0.94259 1.25587 0.95152 0.95702 1.01359 1.69953 1.36940 1.23671 1.24340 0.85616 0.78463 0.78712 0.79223 1.19582 1.20351 1.20378 1.21882 0.88465 0.87496 0.94494 1.67869 1.25990 1.11691 1.21211 1.20356 0.89378 0.88032 0.85846 1.84627 1.52528 1.10636 1.79325 1.67125 1.15721 1.12323 1.32330 1.22830 0.92846 0.88079 0.94029 1.22463 1.02034 1.01557 0.97391 1.20977 0.98994 0.89506 1.01573 1.22442 0.97174 0.98897 0.95459 1.21282 0.98544 0.92948 0.97234 0.90984 0.95892 0.95821 0.92535 0.71480 0.88819 0.90794 0.86146 0.89918 0.87650 0.86670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.96 8.88 71.98 0.64 -5.32 16 2 C 0.08 4.32 2.57 -12.28 -0.03 4.29 16 3 H 0.04 2.18 7.09 -2.39 -0.02 2.16 16 4 C -0.52 -28.91 8.45 25.60 0.22 -28.69 16 5 H 0.04 2.28 7.74 -2.91 -0.02 2.26 16 6 C 0.02 1.18 5.30 84.65 0.45 1.63 16 7 N -0.91 -50.96 11.32 21.45 0.24 -50.72 16 8 Si 0.95 43.77 29.54 68.60 2.03 45.79 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 C 0.22 10.20 5.42 42.56 0.23 10.43 16 13 N -0.54 -25.69 10.10 -301.54 -3.04 -28.74 16 14 C 0.47 19.39 8.71 180.58 1.57 20.97 16 15 O -0.47 -16.33 13.64 -87.59 -1.19 -17.53 16 16 N -0.55 -20.80 10.47 -301.08 -3.15 -23.95 16 17 C 0.17 5.64 7.37 42.68 0.31 5.95 16 18 C -0.23 -8.64 6.04 -19.62 -0.12 -8.76 16 19 C -0.07 -2.02 6.04 30.45 0.18 -1.84 16 20 C -0.10 -1.85 7.10 31.64 0.22 -1.63 16 21 C -0.06 -1.29 6.77 30.57 0.21 -1.08 16 22 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 23 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 24 H 0.02 1.22 8.07 -2.38 -0.02 1.20 16 25 H 0.27 14.06 8.31 -92.70 -0.77 13.29 16 26 H 0.42 10.15 9.06 -74.06 -0.67 9.48 16 27 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.07 2.26 7.88 -2.39 -0.02 2.24 16 29 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -69.16 272.11 -0.76 -69.92 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.47 Total: 9.26 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 3.89 Total: -4.05 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -5.95 Total: -103.40 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -1.19 Total: -17.53 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -69.16 -0.76 -69.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260737901.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.360 kcal (2) G-P(sol) polarization free energy of solvation -69.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds