Wall clock time and date at job start Mon Mar 30 2020 03:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46569 * 111.00147 * 2 1 4 4 C 1.53494 * 109.06893 * 287.90534 * 3 2 1 5 5 N 1.47245 * 107.25674 * 298.28677 * 4 3 2 6 6 C 1.36807 * 121.14712 * 221.23458 * 5 4 3 7 7 H 1.08001 * 120.00317 * 154.50059 * 6 5 4 8 8 C 1.38744 * 120.00117 * 334.50343 * 6 5 4 9 9 N 1.31632 * 120.00108 * 160.60364 * 8 6 5 10 10 Si 1.86801 * 119.99761 * 340.60557 * 8 6 5 11 11 H 1.48499 * 109.46885 * 87.57490 * 10 8 6 12 12 H 1.48495 * 109.46966 * 207.57468 * 10 8 6 13 13 H 1.48495 * 109.47073 * 327.57364 * 10 8 6 14 14 C 1.39831 * 117.70871 * 41.21202 * 5 4 3 15 15 C 1.38917 * 119.42148 * 168.63224 * 14 5 4 16 16 C 1.38530 * 119.95409 * 179.70123 * 15 14 5 17 17 O 1.35988 * 120.05110 * 179.90287 * 16 15 14 18 18 C 1.38810 * 119.89498 * 0.17831 * 16 15 14 19 19 C 1.38071 * 120.29202 * 359.58621 * 18 16 15 20 20 C 1.39098 * 120.29905 * 0.54658 * 19 18 16 21 21 H 1.08999 * 109.46954 * 59.99914 * 1 2 3 22 22 H 1.08998 * 109.47090 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46916 * 300.00507 * 1 2 3 24 24 H 1.09004 * 109.53609 * 168.03055 * 3 2 1 25 25 H 1.08998 * 109.60390 * 47.82913 * 3 2 1 26 26 H 1.08996 * 109.90041 * 178.84640 * 4 3 2 27 27 H 1.09000 * 109.89900 * 57.72533 * 4 3 2 28 28 H 0.96997 * 119.99759 * 180.02562 * 9 8 6 29 29 H 1.08006 * 120.02445 * 359.68434 * 15 14 5 30 30 H 0.96707 * 113.99853 * 90.00613 * 17 16 15 31 31 H 1.07998 * 119.85044 * 179.83672 * 18 16 15 32 32 H 1.08002 * 119.85558 * 180.27216 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9943 1.3683 0.0000 4 6 1.7576 1.9963 -1.3804 5 7 2.5021 1.1888 -2.3611 6 6 3.1982 1.7784 -3.3806 7 1 4.0395 1.2681 -3.8261 8 6 2.8236 3.0320 -3.8424 9 7 3.6770 3.7628 -4.5282 10 14 1.1082 3.6826 -3.4907 11 1 1.1028 4.3808 -2.1801 12 1 0.7107 4.6334 -4.5598 13 1 0.1478 2.5507 -3.4527 14 6 2.4735 -0.2015 -2.2143 15 6 2.9558 -1.0060 -3.2389 16 6 2.9384 -2.3845 -3.1026 17 8 3.4082 -3.1740 -4.1052 18 6 2.4354 -2.9587 -1.9432 19 6 1.9597 -2.1618 -0.9210 20 6 1.9698 -0.7767 -1.0483 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 3.0631 1.3485 0.2130 25 1 1.4818 1.9568 0.7610 26 1 2.1253 3.0224 -1.3892 27 1 0.6939 1.9805 -1.6178 28 1 3.4151 4.6393 -4.8507 29 1 3.3438 -0.5571 -4.1414 30 1 4.3513 -3.3771 -4.0368 31 1 2.4197 -4.0335 -1.8388 32 1 1.5739 -2.6159 -0.0203 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260810408.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:41 Heat of formation + Delta-G solvation = 17.002868 kcal Electronic energy + Delta-G solvation = -16892.066851 eV Core-core repulsion = 14239.517328 eV Total energy + Delta-G solvation = -2652.549523 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.01928 -37.76700 -35.46043 -34.86283 -32.21069 -29.75986 -28.77629 -27.88084 -25.16387 -23.93097 -23.00026 -21.07018 -19.58287 -17.66856 -17.26260 -16.39513 -15.78034 -15.29815 -14.89501 -14.27099 -14.01700 -13.70812 -13.25267 -13.14208 -12.97318 -12.42768 -12.34069 -11.92856 -11.52351 -11.40760 -11.17240 -10.90319 -10.60009 -10.48467 -10.00745 -9.85411 -9.61727 -8.73890 -8.52015 -7.40411 -6.76673 -6.54865 -3.89285 2.04971 2.33551 2.95308 3.13688 3.14537 3.99174 4.16073 4.33429 4.42384 4.93153 5.01812 5.39922 5.46456 5.51562 5.69544 5.78068 5.80763 5.95348 6.00259 6.10876 6.28398 6.30536 6.42728 6.75728 6.82308 7.05183 7.14199 7.38298 7.48148 7.58847 7.82315 8.00617 8.33772 8.42650 9.07266 9.33432 10.55391 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.023574 B = 0.011727 C = 0.008560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.462730 B = 2387.048298 C = 3270.220186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.488 5.488 3 C 0.046 3.954 4 C 0.054 3.946 5 N -0.468 5.468 6 C -0.303 4.303 7 H 0.110 0.890 8 C 0.049 3.951 9 N -0.866 5.866 10 Si 0.887 3.113 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.268 1.268 14 C 0.196 3.804 15 C -0.209 4.209 16 C 0.134 3.866 17 O -0.507 6.507 18 C -0.236 4.236 19 C -0.051 4.051 20 C -0.024 4.024 21 H 0.027 0.973 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.276 0.724 29 H 0.129 0.871 30 H 0.381 0.619 31 H 0.110 0.890 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.829 -5.948 7.275 10.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.206 5.206 3 C -0.083 4.083 4 C -0.072 4.072 5 N -0.159 5.159 6 C -0.430 4.430 7 H 0.127 0.873 8 C -0.157 4.157 9 N -0.501 5.501 10 Si 0.715 3.285 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.193 1.193 14 C 0.081 3.919 15 C -0.234 4.234 16 C 0.089 3.911 17 O -0.316 6.316 18 C -0.259 4.259 19 C -0.071 4.071 20 C -0.124 4.124 21 H 0.045 0.955 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.147 0.853 30 H 0.235 0.765 31 H 0.128 0.872 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.208 -5.579 7.351 10.142 hybrid contribution -0.583 0.941 -0.589 1.254 sum -4.791 -4.638 6.762 9.497 Atomic orbital electron populations 1.22525 0.87209 1.02069 1.00186 1.58859 1.07035 1.12082 1.42577 1.22508 1.01783 0.88115 0.95865 1.22723 0.96318 0.97459 0.90682 1.42857 1.47112 1.00551 1.25360 1.19096 1.10188 1.01371 1.12373 0.87282 1.25272 0.97973 0.96158 0.96255 1.69800 1.33866 1.10736 1.35703 0.86953 0.85174 0.78935 0.77478 1.20217 1.21533 1.19280 1.17914 0.97468 0.84275 0.92270 1.20705 1.10785 0.91798 1.00086 1.18123 0.97617 0.88369 0.86992 1.84772 1.29009 1.69903 1.47924 1.20582 1.11697 0.98814 0.94790 1.20280 0.98457 0.91004 0.97362 1.17996 1.11965 0.92454 0.90024 0.95458 0.91311 0.91725 0.89636 0.89967 0.89017 0.92786 0.91376 0.85350 0.76458 0.87177 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.30 60.07 0.56 0.97 16 2 N -0.49 -8.74 4.79 -178.67 -0.86 -9.60 16 3 C 0.05 0.82 5.95 -3.75 -0.02 0.79 16 4 C 0.05 1.12 4.06 -3.38 -0.01 1.11 16 5 N -0.47 -11.23 2.82 -112.10 -0.32 -11.55 16 6 C -0.30 -8.12 9.24 -15.14 -0.14 -8.26 16 7 H 0.11 3.11 6.99 -52.49 -0.37 2.75 16 8 C 0.05 1.31 5.27 -17.45 -0.09 1.22 16 9 N -0.87 -24.28 13.97 55.49 0.78 -23.51 16 10 Si 0.89 20.56 24.13 -169.99 -4.10 16.46 16 11 H -0.28 -5.95 6.47 56.52 0.37 -5.58 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.27 -6.32 6.61 56.52 0.37 -5.95 16 14 C 0.20 4.45 6.34 -83.51 -0.53 3.92 16 15 C -0.21 -4.65 9.17 -39.22 -0.36 -5.01 16 16 C 0.13 2.62 6.70 -39.26 -0.26 2.36 16 17 O -0.51 -8.76 13.51 -19.70 -0.27 -9.03 16 18 C -0.24 -4.25 9.97 -39.43 -0.39 -4.64 16 19 C -0.05 -0.91 9.49 -39.32 -0.37 -1.28 16 20 C -0.02 -0.48 5.10 -83.49 -0.43 -0.90 16 21 H 0.03 0.46 6.64 -51.93 -0.34 0.11 16 22 H 0.07 0.98 7.79 -51.93 -0.40 0.57 16 23 H 0.06 0.82 8.11 -51.93 -0.42 0.40 16 24 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 25 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 26 H 0.09 1.96 5.31 -51.93 -0.28 1.69 16 27 H 0.05 1.14 4.79 -51.93 -0.25 0.89 16 28 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.13 3.03 6.57 -52.48 -0.34 2.68 16 30 H 0.38 4.63 9.07 45.56 0.41 5.04 16 31 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 32 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 255.83 15.07 3.86 3.86 Total: -1.00 -29.50 255.83 -5.84 -35.34 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -2.88 Total: 7.75 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -2.05 Total: -9.73 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.40 Total: -44.65 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.27 Total: -9.03 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.10 Total: 16.46 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.50 -5.84 -35.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260810408.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.340 kcal (2) G-P(sol) polarization free energy of solvation -29.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds