Wall clock time and date at job start Mon Mar 30 2020 03:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.23141 * 2 1 4 4 C 1.52667 * 109.20128 * 240.60537 * 2 1 3 5 5 C 1.53406 * 108.02182 * 189.85141 * 4 2 1 6 6 C 1.52587 * 108.10103 * 68.10090 * 5 4 2 7 7 N 1.46412 * 111.22816 * 308.61166 * 6 5 4 8 8 C 1.34284 * 123.66240 * 19.28593 * 7 6 5 9 9 N 1.32008 * 121.62591 * 178.12400 * 8 7 6 10 10 C 1.32099 * 123.85157 * 0.62848 * 9 8 7 11 11 C 1.40552 * 118.95538 * 0.27485 * 10 9 8 12 12 C 1.40578 * 121.53812 * 179.74653 * 11 10 9 13 13 H 1.07996 * 120.00166 * 155.87067 * 12 11 10 14 14 C 1.40074 * 119.99922 * 335.59275 * 12 11 10 15 15 N 1.30834 * 120.00003 * 346.79838 * 14 12 11 16 16 Si 1.86797 * 119.99944 * 166.79843 * 14 12 11 17 17 H 1.48504 * 109.47150 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47162 * 119.99853 * 16 14 12 19 19 H 1.48502 * 109.47180 * 240.00133 * 16 14 12 20 20 C 1.35996 * 116.31281 * 199.24847 * 7 6 5 21 21 O 1.21750 * 120.70759 * 1.83282 * 20 7 6 22 22 H 1.08996 * 109.47139 * 300.57055 * 1 2 3 23 23 H 1.09000 * 109.47385 * 60.57689 * 1 2 3 24 24 H 1.09000 * 109.46744 * 180.57650 * 1 2 3 25 25 H 1.08997 * 109.74981 * 309.48378 * 4 2 1 26 26 H 1.09006 * 109.74655 * 70.22221 * 4 2 1 27 27 H 1.09000 * 109.73169 * 187.75353 * 5 4 2 28 28 H 1.08996 * 109.73447 * 308.44922 * 5 4 2 29 29 H 1.08996 * 109.12794 * 69.06389 * 6 5 4 30 30 H 1.09007 * 109.12452 * 188.22103 * 6 5 4 31 31 H 1.08004 * 120.52386 * 180.29943 * 10 9 8 32 32 H 0.96993 * 119.99808 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8890 1.0292 0.0000 4 6 2.0321 -0.7076 -1.2561 5 6 3.5455 -0.9131 -1.1123 6 6 3.7823 -1.9288 0.0015 7 7 3.0634 -1.5554 1.2211 8 6 2.0278 -0.7008 1.2427 9 7 1.3850 -0.4203 2.3610 10 6 1.6989 -0.9310 3.5381 11 6 2.7813 -1.8233 3.6260 12 6 3.1657 -2.3947 4.8516 13 1 3.7044 -3.3305 4.8657 14 6 2.8549 -1.7472 6.0542 15 7 2.4450 -0.5048 6.0413 16 14 3.0259 -2.6576 7.6763 17 1 3.5045 -4.0398 7.4201 18 1 4.0028 -1.9485 8.5413 19 1 1.7071 -2.7080 8.3571 20 6 3.4979 -2.1273 2.3760 21 8 4.4560 -2.8785 2.3757 22 1 -0.3633 0.5226 0.8848 23 1 -0.3634 0.5048 -0.8951 24 1 -0.3633 -1.0276 0.0103 25 1 1.5372 -1.6735 -1.3575 26 1 1.8253 -0.0932 -2.1325 27 1 3.9562 -1.2909 -2.0486 28 1 4.0225 0.0327 -0.8555 29 1 3.4387 -2.9087 -0.3298 30 1 4.8495 -1.9790 0.2181 31 1 1.1324 -0.6675 4.4191 32 1 2.2295 -0.0566 6.8741 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260850446.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:50 Heat of formation + Delta-G solvation = -20.580619 kcal Electronic energy + Delta-G solvation = -16691.963096 eV Core-core repulsion = 14037.783831 eV Total energy + Delta-G solvation = -2654.179265 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.26426 -36.93361 -35.69442 -33.95888 -33.21378 -30.60434 -29.21092 -26.25232 -25.63952 -22.80239 -22.47066 -21.17765 -19.54762 -17.58548 -16.74354 -15.87428 -15.54474 -14.91841 -14.72234 -14.08047 -13.67743 -13.39105 -13.04598 -12.84758 -12.31301 -11.87933 -11.77958 -11.66135 -11.35649 -11.21648 -11.03090 -10.86200 -10.53072 -10.44835 -10.41139 -10.23850 -9.53863 -8.80523 -8.69880 -8.17766 -7.14088 -6.92853 -4.26539 2.22805 3.00455 3.00991 3.08307 3.43832 3.68740 3.87014 4.45057 4.98239 5.02179 5.10031 5.18290 5.40791 5.70397 5.77545 5.87806 5.92773 5.98542 6.03914 6.07878 6.25006 6.31330 6.33675 6.43416 6.65218 6.82923 6.96282 7.32304 7.52482 7.75443 8.15849 8.29795 8.50287 8.61083 9.28237 9.78744 9.97297 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.039407 B = 0.008003 C = 0.006888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.370040 B = 3497.977662 C = 4064.248040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.007 4.007 3 H 0.074 0.926 4 C -0.119 4.119 5 C -0.130 4.130 6 C 0.101 3.899 7 N -0.501 5.501 8 C 0.185 3.815 9 N -0.477 5.477 10 C -0.045 4.045 11 C -0.026 4.026 12 C -0.381 4.381 13 H 0.088 0.912 14 C 0.060 3.940 15 N -0.772 5.772 16 Si 0.924 3.076 17 H -0.257 1.257 18 H -0.271 1.271 19 H -0.269 1.269 20 C 0.487 3.513 21 O -0.573 6.573 22 H 0.072 0.928 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.158 0.842 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 1.347 -8.422 8.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.028 4.028 3 H 0.093 0.907 4 C -0.157 4.157 5 C -0.168 4.168 6 C -0.023 4.023 7 N -0.223 5.223 8 C -0.069 4.069 9 N -0.193 5.193 10 C -0.191 4.191 11 C -0.035 4.035 12 C -0.411 4.411 13 H 0.106 0.894 14 C -0.160 4.160 15 N -0.396 5.396 16 Si 0.747 3.253 17 H -0.181 1.181 18 H -0.196 1.196 19 H -0.193 1.193 20 C 0.286 3.714 21 O -0.456 6.456 22 H 0.091 0.909 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.175 0.825 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.356 1.620 -8.153 8.640 hybrid contribution 0.890 -0.779 0.867 1.466 sum -1.466 0.840 -7.287 7.480 Atomic orbital electron populations 1.21667 0.93783 1.01742 1.01454 1.19627 0.96314 0.97849 0.88968 0.90743 1.21706 0.95194 1.01178 0.97605 1.21791 0.97283 0.99729 0.97966 1.21424 0.98148 0.97949 0.84784 1.45639 1.28569 1.39473 1.08627 1.21481 0.91349 0.99047 0.95025 1.66891 1.28796 1.25448 0.98204 1.22422 0.98763 1.04945 0.93006 1.20461 0.93952 0.97983 0.91094 1.19432 1.27148 1.05450 0.89117 0.89356 1.26085 0.93443 0.94559 1.01870 1.69775 1.29857 1.09693 1.30310 0.85985 0.78963 0.80725 0.79618 1.18057 1.19641 1.19348 1.19787 0.85110 0.82484 0.83973 1.90653 1.29530 1.39463 1.85953 0.90946 0.93557 0.93235 0.91511 0.91184 0.90390 0.91174 0.91663 0.90150 0.82480 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.80 37.16 0.33 -1.61 16 2 C -0.01 -0.12 2.86 -91.75 -0.26 -0.38 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.12 -1.57 5.32 -26.69 -0.14 -1.72 16 5 C -0.13 -1.76 6.05 -26.73 -0.16 -1.92 16 6 C 0.10 1.82 5.81 -4.30 -0.03 1.79 16 7 N -0.50 -11.43 2.98 -113.94 -0.34 -11.77 16 8 C 0.19 4.08 7.04 -154.63 -1.09 2.99 16 9 N -0.48 -11.73 8.97 -9.57 -0.09 -11.82 16 10 C -0.05 -1.22 10.01 -16.56 -0.17 -1.39 16 11 C -0.03 -0.74 5.76 -104.48 -0.60 -1.34 16 12 C -0.38 -10.50 8.87 -38.01 -0.34 -10.83 16 13 H 0.09 2.44 7.81 -52.49 -0.41 2.03 16 14 C 0.06 1.49 5.27 -17.29 -0.09 1.40 16 15 N -0.77 -19.60 10.79 55.56 0.60 -19.00 16 16 Si 0.92 18.57 29.58 -169.99 -5.03 13.54 16 17 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 20 C 0.49 13.19 7.59 -12.04 -0.09 13.10 16 21 O -0.57 -16.40 16.17 5.14 0.08 -16.32 16 22 H 0.07 1.21 7.60 -51.93 -0.39 0.81 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.51 7.50 -51.92 -0.39 1.12 16 31 H 0.16 4.33 6.13 -52.48 -0.32 4.00 16 32 H 0.29 6.48 8.30 -40.82 -0.34 6.14 16 LS Contribution 265.59 15.07 4.00 4.00 Total: -1.00 -30.57 265.59 -7.44 -38.01 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.03 Total: 3.26 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -2.64 Total: 0.09 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.17 Total: -42.58 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.08 Total: -16.32 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.57 -7.44 -38.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260850446.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.432 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds