Wall clock time and date at job start Mon Mar 30 2020 03:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.23281 * 2 1 4 4 C 1.52660 * 109.23934 * 119.39576 * 2 1 3 5 5 C 1.53406 * 108.01810 * 170.29655 * 4 2 1 6 6 C 1.52572 * 108.13947 * 291.96429 * 5 4 2 7 7 N 1.46416 * 111.24046 * 51.35394 * 6 5 4 8 8 C 1.34278 * 123.65351 * 340.48342 * 7 6 5 9 9 N 1.32016 * 121.63425 * 182.30861 * 8 7 6 10 10 C 1.32106 * 123.83802 * 358.84193 * 9 8 7 11 11 C 1.40543 * 118.96172 * 0.41996 * 10 9 8 12 12 C 1.40579 * 121.53684 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99907 * 203.67047 * 12 11 10 14 14 C 1.40066 * 119.99851 * 23.95939 * 12 11 10 15 15 N 1.30834 * 120.00011 * 13.61549 * 14 12 11 16 16 Si 1.86803 * 119.99894 * 193.62464 * 14 12 11 17 17 H 1.48498 * 109.46998 * 89.99363 * 16 14 12 18 18 H 1.48497 * 109.46938 * 209.99363 * 16 14 12 19 19 H 1.48500 * 109.46938 * 329.99303 * 16 14 12 20 20 C 1.35990 * 116.31538 * 161.07028 * 7 6 5 21 21 O 1.21742 * 120.70567 * 357.95553 * 20 7 6 22 22 H 1.09002 * 109.46808 * 179.42360 * 1 2 3 23 23 H 1.08992 * 109.47114 * 299.41930 * 1 2 3 24 24 H 1.08995 * 109.47533 * 59.42673 * 1 2 3 25 25 H 1.09000 * 109.75248 * 289.92804 * 4 2 1 26 26 H 1.09003 * 109.75591 * 50.62013 * 4 2 1 27 27 H 1.09007 * 109.72464 * 51.62826 * 5 4 2 28 28 H 1.08997 * 109.72626 * 172.25579 * 5 4 2 29 29 H 1.09000 * 109.12229 * 290.90384 * 6 5 4 30 30 H 1.08995 * 109.12792 * 171.80910 * 6 5 4 31 31 H 1.08003 * 120.51519 * 180.16035 * 10 9 8 32 32 H 0.97005 * 119.99694 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8890 1.0291 0.0000 4 6 2.0330 -0.7075 1.2558 5 6 3.5470 -0.9090 1.1126 6 6 3.7880 -1.9218 -0.0028 7 7 3.0690 -1.5486 -1.2225 8 6 2.0279 -0.7009 -1.2427 9 7 1.3798 -0.4268 -2.3597 10 6 1.6998 -0.9302 -3.5384 11 6 2.7857 -1.8181 -3.6271 12 6 3.1735 -2.3851 -4.8536 13 1 3.7223 -3.3151 -4.8690 14 6 2.8535 -1.7408 -6.0554 15 7 2.4381 -0.5002 -6.0420 16 14 3.0195 -2.6528 -7.6771 17 1 1.7406 -3.3386 -7.9925 18 1 3.3426 -1.6866 -8.7575 19 1 4.1071 -3.6582 -7.5705 20 6 3.5021 -2.1222 -2.3770 21 8 4.4615 -2.8716 -2.3770 22 1 -0.3633 -1.0276 -0.0103 23 1 -0.3633 0.5047 0.8951 24 1 -0.3634 0.5227 -0.8847 25 1 1.8243 -0.0945 2.1325 26 1 1.5399 -1.6743 1.3565 27 1 4.0219 0.0386 0.8582 28 1 3.9580 -1.2868 2.0487 29 1 3.4473 -2.9034 0.3264 30 1 4.8555 -1.9690 -0.2178 31 1 1.1333 -0.6668 -4.4194 32 1 2.2161 -0.0541 -6.8743 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260850448.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:52 Heat of formation + Delta-G solvation = -20.610249 kcal Electronic energy + Delta-G solvation = -16691.729942 eV Core-core repulsion = 14037.549392 eV Total energy + Delta-G solvation = -2654.180550 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.26229 -36.93383 -35.69362 -33.96120 -33.21379 -30.60346 -29.21031 -26.25286 -25.63892 -22.80100 -22.47126 -21.17414 -19.54723 -17.58590 -16.74387 -15.87432 -15.54022 -14.92388 -14.71897 -14.08026 -13.68072 -13.38831 -13.04457 -12.84409 -12.31074 -11.88231 -11.77461 -11.66024 -11.35906 -11.22029 -11.02155 -10.85773 -10.53886 -10.45294 -10.41844 -10.23737 -9.53176 -8.80759 -8.69879 -8.17121 -7.14946 -6.93036 -4.26423 2.23215 3.00036 3.02683 3.06260 3.43973 3.68707 3.86920 4.44837 4.98459 5.02249 5.10202 5.18621 5.40740 5.70467 5.77677 5.87936 5.93003 5.98710 6.04104 6.07931 6.25125 6.31489 6.33951 6.43524 6.65444 6.83188 6.96110 7.32136 7.52653 7.75538 8.15652 8.29716 8.50303 8.60821 9.28273 9.78995 9.96968 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.039381 B = 0.008004 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.838333 B = 3497.310273 C = 4064.467153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.007 4.007 3 H 0.074 0.926 4 C -0.119 4.119 5 C -0.130 4.130 6 C 0.101 3.899 7 N -0.501 5.501 8 C 0.184 3.816 9 N -0.477 5.477 10 C -0.046 4.046 11 C -0.026 4.026 12 C -0.382 4.382 13 H 0.088 0.912 14 C 0.060 3.940 15 N -0.772 5.772 16 Si 0.924 3.076 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.259 1.259 20 C 0.487 3.513 21 O -0.573 6.573 22 H 0.048 0.952 23 H 0.045 0.955 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.158 0.842 32 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 1.345 8.395 8.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.027 4.027 3 H 0.092 0.908 4 C -0.157 4.157 5 C -0.168 4.168 6 C -0.023 4.023 7 N -0.223 5.223 8 C -0.070 4.070 9 N -0.193 5.193 10 C -0.193 4.193 11 C -0.035 4.035 12 C -0.412 4.412 13 H 0.106 0.894 14 C -0.160 4.160 15 N -0.396 5.396 16 Si 0.748 3.252 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.183 1.183 20 C 0.287 3.713 21 O -0.456 6.456 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.175 0.825 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.349 1.619 8.126 8.612 hybrid contribution 0.883 -0.792 -0.862 1.466 sum -1.466 0.827 7.264 7.457 Atomic orbital electron populations 1.21663 0.93779 1.01743 1.01444 1.19626 0.96315 0.97836 0.88972 0.90759 1.21703 0.95183 1.01188 0.97611 1.21785 0.97270 0.99755 0.97948 1.21412 0.98141 0.97954 0.84769 1.45621 1.28393 1.39651 1.08635 1.21479 0.91068 0.99368 0.95080 1.66902 1.28838 1.25350 0.98209 1.22426 0.98699 1.05170 0.92955 1.20457 0.93982 0.97951 0.91081 1.19410 1.26784 1.05840 0.89124 0.89365 1.26083 0.93463 0.94543 1.01863 1.69772 1.29601 1.09760 1.30440 0.86022 0.80056 0.79991 0.79150 1.18912 1.19928 1.18261 1.19770 0.85141 0.82448 0.83984 1.90651 1.29445 1.39555 1.85954 0.93236 0.93568 0.90942 0.91193 0.91518 0.91178 0.90394 0.91688 0.90153 0.82461 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.80 37.16 0.33 -1.61 16 2 C -0.01 -0.12 2.86 -91.74 -0.26 -0.38 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.12 -1.58 5.32 -26.70 -0.14 -1.72 16 5 C -0.13 -1.76 6.05 -26.74 -0.16 -1.92 16 6 C 0.10 1.82 5.81 -4.31 -0.03 1.80 16 7 N -0.50 -11.43 2.98 -113.94 -0.34 -11.77 16 8 C 0.18 4.06 7.05 -154.62 -1.09 2.97 16 9 N -0.48 -11.73 8.96 -9.57 -0.09 -11.82 16 10 C -0.05 -1.25 10.02 -16.57 -0.17 -1.42 16 11 C -0.03 -0.74 5.77 -104.48 -0.60 -1.34 16 12 C -0.38 -10.50 8.87 -38.01 -0.34 -10.84 16 13 H 0.09 2.43 7.81 -52.49 -0.41 2.02 16 14 C 0.06 1.50 5.27 -17.29 -0.09 1.41 16 15 N -0.77 -19.57 10.78 55.56 0.60 -18.97 16 16 Si 0.92 18.56 29.58 -169.99 -5.03 13.53 16 17 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 18 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 20 C 0.49 13.20 7.59 -12.04 -0.09 13.11 16 21 O -0.57 -16.40 16.17 5.15 0.08 -16.32 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 1.21 7.60 -51.93 -0.39 0.81 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 27 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.08 1.51 7.51 -51.93 -0.39 1.12 16 31 H 0.16 4.33 6.12 -52.48 -0.32 4.01 16 32 H 0.29 6.51 8.30 -40.82 -0.34 6.17 16 LS Contribution 265.57 15.07 4.00 4.00 Total: -1.00 -30.54 265.57 -7.44 -37.98 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.03 Total: 3.30 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -2.64 Total: 0.06 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.17 Total: -42.56 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.08 Total: -16.32 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.54 -7.44 -37.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260850448.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.373 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds