Wall clock time and date at job start Mon Mar 30 2020 02:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47326 * 270.00116 * 3 2 1 5 5 H 1.48494 * 109.47191 * 30.00686 * 3 2 1 6 6 H 1.48508 * 109.46841 * 150.00556 * 3 2 1 7 7 C 1.37876 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00505 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99498 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47028 * 179.97438 * 9 7 2 11 11 N 1.31784 * 119.09525 * 269.97455 * 10 9 7 12 12 C 1.32495 * 120.96919 * 179.75163 * 11 10 9 13 13 C 1.38229 * 119.17027 * 0.52225 * 12 11 10 14 14 C 1.50703 * 120.82422 * 179.76467 * 13 12 11 15 15 C 1.53781 * 113.61495 * 299.71953 * 14 13 12 16 16 C 1.53781 * 87.08070 * 139.97973 * 15 14 13 17 17 C 1.53786 * 87.17350 * 334.52830 * 16 15 14 18 18 C 1.39383 * 118.35390 * 359.49062 * 13 12 11 19 19 O 1.35511 * 120.51258 * 180.26999 * 18 13 12 20 20 N 1.31766 * 119.09368 * 89.99639 * 10 9 7 21 21 H 0.97000 * 119.99777 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47760 * 59.99630 * 9 7 2 23 23 H 1.09000 * 109.46809 * 299.99218 * 9 7 2 24 24 H 1.07998 * 120.41866 * 180.26439 * 12 11 10 25 25 H 1.09003 * 112.90596 * 168.46875 * 14 13 12 26 26 H 1.08999 * 113.61181 * 25.43029 * 15 14 13 27 27 H 1.09000 * 113.69133 * 254.53856 * 15 14 13 28 28 H 1.09002 * 113.61445 * 89.11830 * 16 15 14 29 29 H 1.09002 * 113.61408 * 219.93560 * 16 15 14 30 30 H 1.08992 * 113.61675 * 140.02412 * 17 16 15 31 31 H 1.09000 * 113.60973 * 270.92699 * 17 16 15 32 32 H 0.96702 * 113.99878 * 90.00634 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0018 11 7 2.6454 -4.1315 -1.1539 12 6 3.5096 -5.1348 -1.1983 13 6 3.9697 -5.6806 -0.0147 14 6 4.9490 -6.8261 -0.0218 15 6 4.4192 -8.0851 -0.7282 16 6 5.8297 -8.2522 -1.3177 17 6 5.9990 -6.7334 -1.1451 18 6 3.5100 -5.1415 1.1857 19 8 3.9367 -5.6393 2.3716 20 7 2.6475 -4.1320 1.1491 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8902 23 1 0.6248 -2.5570 0.8898 24 1 3.8471 -5.5241 -2.1475 25 1 5.3771 -7.0243 0.9609 26 1 3.6549 -7.8766 -1.4769 27 1 4.1345 -8.8843 -0.0439 28 1 6.4986 -8.8403 -0.6895 29 1 5.8324 -8.5763 -2.3584 30 1 6.9894 -6.4414 -0.7960 31 1 5.6659 -6.1562 -2.0076 32 1 4.7320 -5.2097 2.7152 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260852034.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:25 Heat of formation + Delta-G solvation = 16.349573 kcal Electronic energy + Delta-G solvation = -15905.389713 eV Core-core repulsion = 13252.811861 eV Total energy + Delta-G solvation = -2652.577852 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.89629 -38.54512 -37.32511 -33.49817 -32.53614 -31.42436 -28.68516 -25.74362 -25.36691 -23.83710 -23.29388 -21.38981 -19.40396 -18.41175 -17.40384 -16.41687 -16.00276 -15.54809 -15.17431 -14.59833 -14.06105 -13.54691 -12.97634 -12.65367 -12.54891 -12.51167 -11.96104 -11.89810 -11.36513 -11.28994 -10.81581 -10.67310 -10.60187 -10.54699 -10.17679 -10.04773 -9.57361 -9.52640 -8.63138 -8.45537 -8.43370 -6.07279 -4.10053 1.35209 1.54331 3.31286 3.36606 3.40433 3.74250 4.24125 4.45071 4.49985 4.55283 4.61869 4.75641 4.89731 4.99205 5.14589 5.29843 5.34858 5.57338 5.60724 5.64691 5.76145 5.84770 5.91033 6.13576 6.15244 6.40184 6.85408 7.42527 7.46649 7.58269 7.66006 7.86138 8.19737 8.85686 8.89154 9.51683 11.03802 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.041057 B = 0.005660 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.811972 B = 4945.682654 C = 5062.592037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.506 4.506 8 H 0.054 0.946 9 C 0.078 3.922 10 C 0.380 3.620 11 N -0.520 5.520 12 C 0.158 3.842 13 C -0.228 4.228 14 C -0.053 4.053 15 C -0.132 4.132 16 C -0.141 4.141 17 C -0.137 4.137 18 C 0.354 3.646 19 O -0.480 6.480 20 N -0.533 5.533 21 H 0.264 0.736 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.159 0.841 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.377 -14.082 -1.123 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.039 3.961 10 C 0.117 3.883 11 N -0.235 5.235 12 C -0.008 4.008 13 C -0.234 4.234 14 C -0.072 4.072 15 C -0.169 4.169 16 C -0.179 4.179 17 C -0.174 4.174 18 C 0.165 3.835 19 O -0.287 6.287 20 N -0.257 5.257 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.177 0.823 25 H 0.118 0.882 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 10.110 -13.613 -1.118 16.993 hybrid contribution 1.496 0.456 0.229 1.581 sum 11.605 -13.157 -0.889 17.566 Atomic orbital electron populations 1.69940 1.05972 1.27056 1.50013 1.24926 0.94939 0.99189 0.94966 0.86441 0.79674 0.82810 0.78183 1.20470 1.20995 1.19941 1.20754 0.92732 0.89255 1.51759 0.92817 1.18303 0.91232 0.86722 0.99824 1.24296 0.91366 0.92031 0.80644 1.68490 1.12506 1.11332 1.31130 1.22978 0.90251 0.90298 0.97294 1.21360 1.04508 1.03164 0.94413 1.21242 0.94413 0.92289 0.99280 1.22987 0.96904 0.97223 0.99783 1.22813 0.97292 0.96541 1.01222 1.23116 0.98989 0.96608 0.98715 1.19421 0.90446 0.88686 0.84924 1.84663 1.49025 1.59726 1.35280 1.68035 1.13439 1.11257 1.32982 0.92623 0.93067 0.93254 0.82348 0.88238 0.89985 0.91348 0.90222 0.91360 0.91303 0.89731 0.74245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.55 9.09 -34.44 -0.31 -14.86 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.08 2.10 5.41 -29.03 -0.16 1.95 16 10 C 0.38 9.09 6.83 -157.23 -1.07 8.02 16 11 N -0.52 -11.25 10.33 -10.79 -0.11 -11.36 16 12 C 0.16 2.67 9.94 -17.27 -0.17 2.49 16 13 C -0.23 -3.56 5.32 -104.20 -0.55 -4.11 16 14 C -0.05 -0.60 3.91 -90.82 -0.36 -0.96 16 15 C -0.13 -1.33 7.56 -25.92 -0.20 -1.52 16 16 C -0.14 -1.17 8.07 -25.92 -0.21 -1.38 16 17 C -0.14 -1.31 7.49 -25.77 -0.19 -1.50 16 18 C 0.35 6.44 7.81 -16.70 -0.13 6.31 16 19 O -0.48 -7.15 12.64 -18.23 -0.23 -7.38 16 20 N -0.53 -12.03 10.36 -10.78 -0.11 -12.15 16 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 22 H 0.05 1.43 8.14 -51.93 -0.42 1.01 16 23 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 24 H 0.16 2.08 6.75 -52.49 -0.35 1.73 16 25 H 0.10 1.06 7.44 -51.93 -0.39 0.67 16 26 H 0.08 0.86 7.76 -51.93 -0.40 0.46 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.82 6.38 -51.93 -0.33 0.49 16 32 H 0.40 3.93 9.06 45.56 0.41 4.34 16 LS Contribution 276.68 15.07 4.17 4.17 Total: -1.00 -32.57 276.68 -7.16 -39.73 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -3.14 Total: -0.19 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -3.45 Total: -3.90 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.51 Total: -49.16 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.23 Total: -7.38 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.57 -7.16 -39.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260852034.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.080 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds