Wall clock time and date at job start Mon Mar 30 2020 02:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47326 * 270.00116 * 3 2 1 5 5 H 1.48494 * 109.47191 * 30.00686 * 3 2 1 6 6 H 1.48508 * 109.46841 * 150.00556 * 3 2 1 7 7 C 1.37876 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00505 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99498 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47028 * 179.97438 * 9 7 2 11 11 N 1.31784 * 119.09525 * 269.97455 * 10 9 7 12 12 C 1.32495 * 120.96919 * 179.75163 * 11 10 9 13 13 C 1.38229 * 119.17027 * 0.52225 * 12 11 10 14 14 C 1.50703 * 120.82422 * 179.76467 * 13 12 11 15 15 C 1.53781 * 113.61495 * 299.71953 * 14 13 12 16 16 C 1.53781 * 87.08070 * 139.97973 * 15 14 13 17 17 C 1.53786 * 87.17350 * 334.52830 * 16 15 14 18 18 C 1.39383 * 118.35390 * 359.49062 * 13 12 11 19 19 O 1.35511 * 120.51258 * 180.26999 * 18 13 12 20 20 N 1.31766 * 119.09368 * 89.99639 * 10 9 7 21 21 H 0.97000 * 119.99777 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47760 * 59.99630 * 9 7 2 23 23 H 1.09000 * 109.46809 * 299.99218 * 9 7 2 24 24 H 1.07998 * 120.41866 * 180.26439 * 12 11 10 25 25 H 1.09003 * 112.90596 * 168.46875 * 14 13 12 26 26 H 1.08999 * 113.61181 * 25.43029 * 15 14 13 27 27 H 1.09000 * 113.69133 * 254.53856 * 15 14 13 28 28 H 1.09002 * 113.61445 * 89.11830 * 16 15 14 29 29 H 1.09002 * 113.61408 * 219.93560 * 16 15 14 30 30 H 1.08992 * 113.61675 * 140.02412 * 17 16 15 31 31 H 1.09000 * 113.60973 * 270.92699 * 17 16 15 32 32 H 0.96702 * 113.99878 * 90.00634 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0018 11 7 2.6454 -4.1315 -1.1539 12 6 3.5096 -5.1348 -1.1983 13 6 3.9697 -5.6806 -0.0147 14 6 4.9490 -6.8261 -0.0218 15 6 4.4192 -8.0851 -0.7282 16 6 5.8297 -8.2522 -1.3177 17 6 5.9990 -6.7334 -1.1451 18 6 3.5100 -5.1415 1.1857 19 8 3.9367 -5.6393 2.3716 20 7 2.6475 -4.1320 1.1491 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8902 23 1 0.6248 -2.5570 0.8898 24 1 3.8471 -5.5241 -2.1475 25 1 5.3771 -7.0243 0.9609 26 1 3.6549 -7.8766 -1.4769 27 1 4.1345 -8.8843 -0.0439 28 1 6.4986 -8.8403 -0.6895 29 1 5.8324 -8.5763 -2.3584 30 1 6.9894 -6.4414 -0.7960 31 1 5.6659 -6.1562 -2.0076 32 1 4.7320 -5.2097 2.7152 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260852034.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:25 Heat of formation + Delta-G solvation = -8.182479 kcal Electronic energy + Delta-G solvation = -15906.453502 eV Core-core repulsion = 13252.811861 eV Total energy + Delta-G solvation = -2653.641642 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.31842 -39.50501 -38.62848 -35.50035 -34.16293 -33.01983 -30.47046 -26.91755 -26.48558 -25.24140 -24.88965 -22.90973 -20.33099 -19.80617 -18.79504 -18.59726 -17.26131 -16.77166 -16.48803 -16.03084 -15.49164 -15.02737 -14.54805 -14.18979 -13.76320 -13.56724 -13.34433 -13.25137 -13.10456 -12.79663 -12.61455 -12.30948 -11.89469 -11.71240 -11.55473 -11.32662 -11.31014 -11.03562 -10.64236 -10.16728 -9.88373 -8.25292 -6.37693 -0.12035 0.09998 1.39471 1.42041 1.52682 2.32633 2.43906 2.76987 3.07100 3.20339 3.50441 3.65923 3.69919 3.86380 4.06733 4.09260 4.23792 4.49307 4.63995 4.85638 4.88065 4.97898 5.12644 5.15860 5.18196 5.30615 5.33828 5.39329 5.61742 5.63726 6.01103 6.09769 6.50709 6.67407 7.25256 7.28919 8.86512 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.041057 B = 0.005660 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.811972 B = 4945.682654 C = 5062.592037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.974 3.026 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.526 4.526 8 H 0.047 0.953 9 C 0.088 3.912 10 C 0.355 3.645 11 N -0.544 5.544 12 C 0.154 3.846 13 C -0.199 4.199 14 C -0.060 4.060 15 C -0.134 4.134 16 C -0.127 4.127 17 C -0.134 4.134 18 C 0.344 3.656 19 O -0.477 6.477 20 N -0.568 5.568 21 H 0.269 0.731 22 H 0.027 0.973 23 H 0.020 0.980 24 H 0.199 0.801 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.048 -15.256 -1.566 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.564 4.564 8 H 0.065 0.935 9 C 0.049 3.951 10 C 0.090 3.910 11 N -0.259 5.259 12 C -0.011 4.011 13 C -0.205 4.205 14 C -0.079 4.079 15 C -0.172 4.172 16 C -0.164 4.164 17 C -0.172 4.172 18 C 0.156 3.844 19 O -0.286 6.286 20 N -0.293 5.293 21 H 0.078 0.922 22 H 0.045 0.955 23 H 0.038 0.962 24 H 0.216 0.784 25 H 0.130 0.870 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 12.817 -14.818 -1.549 19.653 hybrid contribution 0.731 0.651 0.412 1.062 sum 13.548 -14.167 -1.138 19.636 Atomic orbital electron populations 1.70059 1.07602 1.28347 1.50413 1.25881 0.95878 1.03040 0.94095 0.85326 0.78332 0.77892 0.78724 1.19317 1.19945 1.19377 1.20988 0.92528 0.90600 1.52318 0.93482 1.17891 0.91616 0.88444 0.97153 1.23404 0.92843 0.92752 0.82031 1.68355 1.14105 1.13156 1.30285 1.23619 0.88957 0.88964 0.99542 1.21792 1.03174 1.02754 0.92778 1.21518 0.94268 0.91086 1.01045 1.23022 0.98130 0.96314 0.99698 1.22773 0.95823 0.95648 1.02178 1.23138 0.98688 0.97778 0.97560 1.19688 0.89970 0.87924 0.86803 1.84633 1.50354 1.59438 1.34224 1.67835 1.15269 1.13360 1.32839 0.92166 0.95499 0.96214 0.78413 0.86979 0.90502 0.90931 0.88768 0.90148 0.90157 0.89815 0.71642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 2 C 0.01 0.59 5.46 84.66 0.46 1.05 16 3 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.53 -31.40 9.09 25.60 0.23 -31.17 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.09 5.05 5.41 29.10 0.16 5.21 16 10 C 0.36 17.68 6.83 138.76 0.95 18.63 16 11 N -0.54 -23.91 10.33 -188.05 -1.94 -25.85 16 12 C 0.15 4.98 9.94 84.59 0.84 5.82 16 13 C -0.20 -5.84 5.32 -19.59 -0.10 -5.95 16 14 C -0.06 -1.16 3.91 -10.92 -0.04 -1.20 16 15 C -0.13 -2.24 7.56 31.12 0.24 -2.01 16 16 C -0.13 -1.55 8.07 31.12 0.25 -1.30 16 17 C -0.13 -2.02 7.49 31.21 0.23 -1.79 16 18 C 0.34 12.25 7.81 84.82 0.66 12.91 16 19 O -0.48 -13.40 12.64 -88.13 -1.11 -14.52 16 20 N -0.57 -26.32 10.36 -300.69 -3.12 -29.44 16 21 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 22 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.20 4.64 6.75 -2.91 -0.02 4.62 16 25 H 0.11 1.95 7.44 -2.39 -0.02 1.94 16 26 H 0.08 1.38 7.76 -2.39 -0.02 1.36 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.29 6.38 -2.39 -0.02 1.28 16 32 H 0.42 7.40 9.06 -74.06 -0.67 6.73 16 Total: -1.00 -73.29 276.68 0.49 -72.80 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 0.47 Total: 5.88 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 3.88 Total: 0.21 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -4.77 Total: -111.41 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -1.11 Total: -14.52 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -73.29 0.49 -72.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260852034.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.622 kcal (2) G-P(sol) polarization free energy of solvation -73.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds