Wall clock time and date at job start Mon Mar 30 2020 03:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 119.99788 * 2 1 4 4 N 1.34778 * 119.99703 * 359.97438 * 3 2 1 5 5 O 1.21584 * 119.99953 * 179.97438 * 3 2 1 6 6 C 1.39946 * 120.00068 * 179.97438 * 2 1 3 7 7 C 1.38888 * 120.06497 * 90.30324 * 6 2 1 8 8 C 1.38097 * 119.92739 * 180.29793 * 7 6 2 9 9 C 1.38296 * 120.06899 * 359.67959 * 8 7 6 10 10 C 1.38256 * 120.14286 * 0.02562 * 9 8 7 11 11 C 1.38143 * 120.06764 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.03248 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47294 * 264.99736 * 12 11 10 14 14 H 1.07999 * 119.99515 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00176 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99883 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00043 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47293 * 89.99746 * 17 15 13 19 19 H 1.48504 * 109.47104 * 209.99992 * 17 15 13 20 20 H 1.48495 * 109.47249 * 329.99739 * 17 15 13 21 21 H 1.09005 * 109.47425 * 270.00087 * 1 2 3 22 22 H 1.08999 * 109.47164 * 30.00453 * 1 2 3 23 23 H 1.09004 * 109.46767 * 150.00731 * 1 2 3 24 24 H 0.97000 * 120.00376 * 0.02562 * 4 3 2 25 25 H 0.97001 * 119.99688 * 180.02562 * 4 3 2 26 26 H 1.08000 * 120.03778 * 359.97438 * 7 6 2 27 27 H 1.07999 * 119.96703 * 179.69884 * 8 7 6 28 28 H 1.08005 * 119.93158 * 180.02562 * 9 8 7 29 29 H 1.07995 * 119.97109 * 179.97438 * 10 9 8 30 30 H 1.09001 * 109.46665 * 145.00117 * 12 11 10 31 31 H 1.09000 * 109.47722 * 25.00449 * 12 11 10 32 32 H 0.97004 * 119.99507 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 7 1.4649 2.3344 -0.0005 5 8 3.3547 1.1673 0.0005 6 6 2.1647 -1.2120 0.0005 7 6 2.5182 -1.8119 -1.2012 8 6 3.2032 -3.0109 -1.1974 9 6 3.5432 -3.6110 0.0014 10 6 3.1982 -3.0132 1.1994 11 6 2.5119 -1.8143 1.2023 12 6 2.1358 -1.1638 2.5085 13 6 0.7287 -1.5567 2.8786 14 1 0.1636 -2.2124 2.2327 15 6 0.1629 -1.0793 4.0417 16 7 0.8509 -0.2805 4.8280 17 14 -1.5809 -1.5670 4.5008 18 1 -1.5494 -2.8064 5.3182 19 1 -2.2109 -0.4736 5.2836 20 1 -2.3688 -1.8087 3.2655 21 1 -0.3634 0.0000 1.0277 22 1 -0.3633 0.8899 -0.5139 23 1 -0.3633 -0.8901 -0.5137 24 1 0.4949 2.3344 -0.0005 25 1 1.9498 3.1745 -0.0009 26 1 2.2529 -1.3438 -2.1377 27 1 3.4741 -3.4805 -2.1315 28 1 4.0794 -4.5485 0.0018 29 1 3.4647 -3.4844 2.1338 30 1 2.1951 -0.0803 2.4051 31 1 2.8220 -1.4923 3.2891 32 1 0.4529 0.0551 5.6465 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260903635.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:52 Heat of formation + Delta-G solvation = -24.884348 kcal Electronic energy + Delta-G solvation = -16661.326116 eV Core-core repulsion = 14006.960227 eV Total energy + Delta-G solvation = -2654.365889 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.55690 -39.56742 -36.37398 -35.41906 -34.47349 -32.95206 -30.79159 -29.00155 -27.40331 -25.29190 -23.86864 -22.26554 -20.91400 -19.33663 -18.48719 -18.09756 -17.19922 -17.01476 -16.58491 -15.99661 -15.38046 -15.16329 -14.67217 -14.44672 -14.09706 -13.90638 -13.40690 -13.34083 -13.22887 -12.79492 -12.67921 -12.33339 -12.07597 -11.53202 -11.46484 -11.32994 -10.68335 -10.59327 -9.66084 -9.63352 -9.36549 -8.16368 -6.29361 0.47348 0.64294 1.40673 1.42441 1.53064 1.88465 2.22235 2.40639 2.95187 3.14237 3.42004 4.12783 4.22681 4.27956 4.33774 4.59622 4.61268 4.79563 4.84230 5.04787 5.15841 5.27449 5.40859 5.53943 5.62711 5.67675 5.77427 5.91096 6.00748 6.05470 6.15976 6.37684 6.81431 6.94316 7.37784 7.67470 8.93506 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.020613 B = 0.010666 C = 0.008386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.069392 B = 2624.529743 C = 3337.954572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.575 5.575 3 C 0.703 3.297 4 N -0.845 5.845 5 O -0.642 6.642 6 C 0.128 3.872 7 C -0.116 4.116 8 C -0.128 4.128 9 C -0.109 4.109 10 C -0.140 4.140 11 C -0.069 4.069 12 C 0.070 3.930 13 C -0.504 4.504 14 H 0.059 0.941 15 C 0.005 3.995 16 N -0.933 5.933 17 Si 0.963 3.037 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.254 1.254 21 H 0.050 0.950 22 H 0.100 0.900 23 H 0.082 0.918 24 H 0.411 0.589 25 H 0.420 0.580 26 H 0.135 0.865 27 H 0.160 0.840 28 H 0.154 0.846 29 H 0.115 0.885 30 H -0.008 1.008 31 H -0.014 1.014 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 -1.202 -12.718 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.307 5.307 3 C 0.403 3.597 4 N -0.416 5.416 5 O -0.524 6.524 6 C 0.037 3.963 7 C -0.135 4.135 8 C -0.146 4.146 9 C -0.127 4.127 10 C -0.158 4.158 11 C -0.070 4.070 12 C 0.033 3.967 13 C -0.542 4.542 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.573 5.573 17 Si 0.788 3.212 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.178 1.178 21 H 0.069 0.931 22 H 0.118 0.882 23 H 0.100 0.900 24 H 0.244 0.756 25 H 0.253 0.747 26 H 0.153 0.847 27 H 0.178 0.822 28 H 0.171 0.829 29 H 0.133 0.867 30 H 0.010 0.990 31 H 0.005 0.995 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.502 -1.240 -12.569 12.876 hybrid contribution -0.880 0.479 1.105 1.491 sum -3.382 -0.761 -11.465 11.977 Atomic orbital electron populations 1.21982 0.77150 1.04206 1.02730 1.44121 1.07305 1.02479 1.76831 1.16107 0.84727 0.81725 0.77093 1.42787 1.11380 1.06020 1.81373 1.90878 1.13949 1.87090 1.60495 1.17341 0.98975 0.87257 0.92735 1.21449 0.99018 0.96580 0.96476 1.21278 0.99150 0.95047 0.99160 1.21454 0.99240 1.00553 0.91461 1.21124 1.00138 0.95235 0.99353 1.20768 0.94820 0.95501 0.95929 1.17887 0.96098 0.93861 0.88812 1.21134 0.98130 1.28767 1.06193 0.92276 1.25916 1.02286 0.94888 0.96155 1.70140 1.39214 1.34381 1.13571 0.85473 0.79260 0.77667 0.78833 1.20435 1.20947 1.17795 0.93095 0.88155 0.89964 0.75645 0.74712 0.84692 0.82228 0.82876 0.86683 0.98971 0.99520 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.49 10.10 127.77 1.29 3.78 16 2 N -0.57 -22.34 2.10 -671.54 -1.41 -23.75 16 3 C 0.70 28.51 7.88 179.05 1.41 29.92 16 4 N -0.84 -24.23 8.74 -184.75 -1.61 -25.84 16 5 O -0.64 -32.00 17.15 -3.98 -0.07 -32.06 16 6 C 0.13 5.33 4.44 38.14 0.17 5.50 16 7 C -0.12 -3.92 9.97 22.39 0.22 -3.70 16 8 C -0.13 -3.69 10.04 22.25 0.22 -3.46 16 9 C -0.11 -3.40 10.04 22.29 0.22 -3.18 16 10 C -0.14 -5.67 9.68 22.25 0.22 -5.46 16 11 C -0.07 -3.24 5.09 -19.74 -0.10 -3.34 16 12 C 0.07 3.96 4.79 29.10 0.14 4.10 16 13 C -0.50 -27.91 7.95 25.60 0.20 -27.71 16 14 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 15 C 0.01 0.30 5.46 84.65 0.46 0.76 16 16 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 17 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 21 H 0.05 1.89 7.06 -2.38 -0.02 1.87 16 22 H 0.10 2.12 6.36 -2.39 -0.02 2.11 16 23 H 0.08 2.29 8.05 -2.39 -0.02 2.27 16 24 H 0.41 9.07 6.56 -92.71 -0.61 8.46 16 25 H 0.42 10.40 8.93 -92.71 -0.83 9.57 16 26 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 27 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 28 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 29 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 30 H -0.01 -0.50 7.09 -2.39 -0.02 -0.52 16 31 H -0.01 -0.84 8.05 -2.39 -0.02 -0.86 16 32 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -76.77 277.95 3.39 -73.38 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -0.29 Total: 22.48 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 4.46 Total: -2.80 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -2.74 Total: -105.66 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.07 Total: -32.06 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -76.77 3.39 -73.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260903635.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.497 kcal (2) G-P(sol) polarization free energy of solvation -76.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds