Wall clock time and date at job start Mon Mar 30 2020 03:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31409 * 119.03103 * 2 1 4 4 C 1.33906 * 120.44162 * 179.42570 * 3 2 1 5 5 C 1.41549 * 120.58861 * 178.96926 * 4 3 2 6 6 H 1.08003 * 120.00008 * 172.71398 * 5 4 3 7 7 C 1.40106 * 120.00077 * 352.71269 * 5 4 3 8 8 N 1.30672 * 120.00108 * 6.13826 * 7 5 4 9 9 Si 1.86801 * 119.99948 * 186.13757 * 7 5 4 10 10 H 1.48505 * 109.47165 * 94.98303 * 9 7 5 11 11 H 1.48502 * 109.47033 * 214.97983 * 9 7 5 12 12 H 1.48497 * 109.47357 * 334.97808 * 9 7 5 13 13 C 1.41366 * 118.81984 * 358.98461 * 4 3 2 14 14 C 1.37449 * 118.13077 * 2.59507 * 13 4 3 15 15 N 1.31865 * 119.03447 * 179.97438 * 2 1 3 16 16 C 1.50403 * 122.07388 * 177.21221 * 14 13 4 17 17 C 1.53146 * 110.51905 * 49.93176 * 16 14 13 18 18 O 1.42466 * 107.83068 * 268.09758 * 17 16 14 19 19 C 1.43029 * 114.14903 * 32.96722 * 18 17 16 20 20 C 1.50234 * 118.44777 * 184.32662 * 13 4 3 21 21 H 1.09003 * 109.47267 * 270.02049 * 1 2 3 22 22 H 1.09000 * 109.47592 * 30.02212 * 1 2 3 23 23 H 1.09000 * 109.46895 * 150.02628 * 1 2 3 24 24 H 0.97001 * 119.99814 * 179.97438 * 8 7 5 25 25 H 1.09008 * 109.26482 * 289.66726 * 16 14 13 26 26 H 1.08993 * 109.23583 * 170.18518 * 16 14 13 27 27 H 1.09001 * 109.78782 * 148.51775 * 17 16 14 28 28 H 1.09002 * 109.83539 * 27.70997 * 17 16 14 29 29 H 1.08999 * 109.63550 * 180.35829 * 19 18 17 30 30 H 1.09002 * 109.64162 * 300.76289 * 19 18 17 31 31 H 1.09010 * 108.91296 * 87.01340 * 20 13 4 32 32 H 1.08997 * 109.21874 * 327.98079 * 20 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1447 1.1490 0.0000 4 6 3.4833 1.1820 0.0116 5 6 4.1736 2.4175 -0.0103 6 1 5.2458 2.4395 0.1177 7 6 3.4660 3.6121 -0.1981 8 7 2.1598 3.5992 -0.2329 9 14 4.3898 5.2233 -0.3986 10 1 4.5677 5.5153 -1.8437 11 1 3.6157 6.3200 0.2364 12 1 5.7202 5.1154 0.2521 13 6 4.1948 -0.0391 0.0457 14 6 3.4752 -1.2096 0.0106 15 7 2.1470 -1.1529 0.0005 16 6 4.1429 -2.5570 -0.0195 17 6 5.2009 -2.6566 1.0833 18 8 6.4475 -2.2443 0.5303 19 6 6.3364 -1.2282 -0.4701 20 6 5.6922 0.0080 0.1581 21 1 -0.3634 0.0004 1.0277 22 1 -0.3634 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5134 24 1 1.6699 4.4263 -0.3626 25 1 4.6195 -2.7006 -0.9892 26 1 3.3925 -3.3331 0.1309 27 1 5.2746 -3.6867 1.4320 28 1 4.9318 -2.0042 1.9140 29 1 7.3275 -0.9739 -0.8456 30 1 5.7152 -1.5880 -1.2904 31 1 5.9661 0.0569 1.2121 32 1 6.0621 0.8998 -0.3478 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261003819.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:50 Heat of formation + Delta-G solvation = -9.702607 kcal Electronic energy + Delta-G solvation = -16717.910845 eV Core-core repulsion = 14064.203286 eV Total energy + Delta-G solvation = -2653.707559 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.81999 -37.89066 -34.33264 -33.14293 -32.14655 -30.28994 -29.05042 -27.12888 -25.61928 -24.44904 -21.44793 -20.30168 -19.92676 -17.44362 -16.58615 -16.48952 -15.19621 -14.85338 -14.41458 -13.83767 -13.59686 -13.06538 -12.79566 -12.39804 -12.17840 -11.99977 -11.60602 -11.48386 -11.43352 -11.12001 -11.02689 -10.81983 -10.73414 -10.36274 -10.10279 -9.70516 -9.03905 -8.92243 -8.51742 -7.65845 -7.44166 -6.53040 -4.82153 2.57249 2.77593 3.00122 3.03310 3.16163 3.81936 4.28609 4.63267 5.10059 5.43294 5.49568 5.56725 5.62376 5.77972 5.86138 5.91687 5.94914 6.08764 6.26983 6.39684 6.47906 6.50380 6.58878 6.63114 6.70675 6.79671 6.99832 7.17565 7.36619 7.63122 7.81763 7.98589 8.44593 8.71789 9.03525 10.06747 10.19761 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.023773 B = 0.010304 C = 0.007380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.534705 B = 2716.637479 C = 3793.126073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.304 3.696 3 N -0.516 5.516 4 C 0.274 3.726 5 C -0.419 4.419 6 H 0.092 0.908 7 C 0.069 3.931 8 N -0.705 5.705 9 Si 0.909 3.091 10 H -0.268 1.268 11 H -0.274 1.274 12 H -0.259 1.259 13 C -0.285 4.285 14 C 0.162 3.838 15 N -0.622 5.622 16 C -0.105 4.105 17 C 0.073 3.927 18 O -0.396 6.396 19 C 0.057 3.943 20 C -0.080 4.080 21 H 0.062 0.938 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.276 0.724 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.372 -3.770 -0.294 5.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.033 3.967 3 N -0.237 5.237 4 C 0.144 3.856 5 C -0.453 4.453 6 H 0.110 0.890 7 C -0.158 4.158 8 N -0.326 5.326 9 Si 0.733 3.267 10 H -0.193 1.193 11 H -0.199 1.199 12 H -0.183 1.183 13 C -0.294 4.294 14 C 0.024 3.976 15 N -0.346 5.346 16 C -0.143 4.143 17 C -0.004 4.004 18 O -0.315 6.315 19 C -0.019 4.019 20 C -0.119 4.119 21 H 0.081 0.919 22 H 0.091 0.909 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.356 -3.703 -0.267 4.397 hybrid contribution 0.896 0.946 -0.143 1.311 sum 3.253 -2.757 -0.410 4.284 Atomic orbital electron populations 1.20234 0.88961 1.01791 1.01606 1.22768 0.96779 0.85087 0.92065 1.69194 1.08674 1.25791 1.19995 1.18796 0.88003 0.91636 0.87132 1.19724 0.95135 0.89351 1.41092 0.89028 1.26146 0.94914 1.01189 0.93582 1.70093 1.07152 1.28536 1.26856 0.86273 0.80567 0.80427 0.79427 1.19297 1.19919 1.18277 1.20666 0.95629 0.94916 1.18153 1.20272 0.90018 0.92838 0.94508 1.67907 1.08619 1.30722 1.27363 1.21056 0.98126 0.95282 0.99831 1.22516 0.83183 0.99320 0.95376 1.87760 1.29876 1.57296 1.56589 1.22831 1.00621 0.87569 0.90862 1.20590 0.92575 0.98057 1.00651 0.91919 0.90937 0.91968 0.91284 0.89829 0.90066 0.89818 0.92839 0.89407 0.92476 0.92047 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.37 10.31 36.01 0.37 -1.00 16 2 C 0.30 7.69 7.64 -157.46 -1.20 6.49 16 3 N -0.52 -14.27 7.97 -8.63 -0.07 -14.34 16 4 C 0.27 7.39 6.57 -84.51 -0.56 6.83 16 5 C -0.42 -10.77 8.60 -37.62 -0.32 -11.09 16 6 H 0.09 2.17 6.03 -52.48 -0.32 1.85 16 7 C 0.07 1.69 5.49 -17.34 -0.10 1.60 16 8 N -0.71 -18.20 11.55 55.55 0.64 -17.56 16 9 Si 0.91 17.86 29.56 -169.99 -5.03 12.83 16 10 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 11 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 12 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 13 C -0.28 -6.82 5.56 -103.95 -0.58 -7.40 16 14 C 0.16 3.73 6.07 -82.54 -0.50 3.23 16 15 N -0.62 -15.33 10.18 -7.29 -0.07 -15.40 16 16 C -0.10 -1.92 5.37 -27.95 -0.15 -2.07 16 17 C 0.07 1.23 6.70 37.23 0.25 1.47 16 18 O -0.40 -6.92 10.73 -35.23 -0.38 -7.30 16 19 C 0.06 0.98 6.45 37.10 0.24 1.22 16 20 C -0.08 -1.61 4.75 -28.16 -0.13 -1.74 16 21 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 22 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.28 6.41 8.29 -40.82 -0.34 6.07 16 25 H 0.08 1.45 5.95 -51.92 -0.31 1.14 16 26 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.05 0.98 7.73 -51.93 -0.40 0.58 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.06 0.99 5.43 -51.93 -0.28 0.71 16 31 H 0.06 1.25 8.03 -51.92 -0.42 0.83 16 32 H 0.08 1.55 6.22 -51.93 -0.32 1.23 16 LS Contribution 261.32 15.07 3.94 3.94 Total: -1.00 -29.69 261.32 -7.36 -37.05 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -3.72 Total: 3.24 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -2.68 Total: -2.46 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.50 Total: -47.29 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.38 Total: -7.30 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.69 -7.36 -37.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261003819.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.346 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds