Wall clock time and date at job start Mon Mar 30 2020 03:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31409 * 119.03103 * 2 1 4 4 C 1.33906 * 120.44162 * 179.42570 * 3 2 1 5 5 C 1.41549 * 120.58861 * 178.96926 * 4 3 2 6 6 H 1.08003 * 120.00008 * 172.71398 * 5 4 3 7 7 C 1.40106 * 120.00077 * 352.71269 * 5 4 3 8 8 N 1.30672 * 120.00108 * 6.13826 * 7 5 4 9 9 Si 1.86801 * 119.99948 * 186.13757 * 7 5 4 10 10 H 1.48505 * 109.47165 * 94.98303 * 9 7 5 11 11 H 1.48502 * 109.47033 * 214.97983 * 9 7 5 12 12 H 1.48497 * 109.47357 * 334.97808 * 9 7 5 13 13 C 1.41366 * 118.81984 * 358.98461 * 4 3 2 14 14 C 1.37449 * 118.13077 * 2.59507 * 13 4 3 15 15 N 1.31865 * 119.03447 * 179.97438 * 2 1 3 16 16 C 1.50403 * 122.07388 * 177.21221 * 14 13 4 17 17 C 1.53146 * 110.51905 * 49.93176 * 16 14 13 18 18 O 1.42466 * 107.83068 * 268.09758 * 17 16 14 19 19 C 1.43029 * 114.14903 * 32.96722 * 18 17 16 20 20 C 1.50234 * 118.44777 * 184.32662 * 13 4 3 21 21 H 1.09003 * 109.47267 * 270.02049 * 1 2 3 22 22 H 1.09000 * 109.47592 * 30.02212 * 1 2 3 23 23 H 1.09000 * 109.46895 * 150.02628 * 1 2 3 24 24 H 0.97001 * 119.99814 * 179.97438 * 8 7 5 25 25 H 1.09008 * 109.26482 * 289.66726 * 16 14 13 26 26 H 1.08993 * 109.23583 * 170.18518 * 16 14 13 27 27 H 1.09001 * 109.78782 * 148.51775 * 17 16 14 28 28 H 1.09002 * 109.83539 * 27.70997 * 17 16 14 29 29 H 1.08999 * 109.63550 * 180.35829 * 19 18 17 30 30 H 1.09002 * 109.64162 * 300.76289 * 19 18 17 31 31 H 1.09010 * 108.91296 * 87.01340 * 20 13 4 32 32 H 1.08997 * 109.21874 * 327.98079 * 20 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1447 1.1490 0.0000 4 6 3.4833 1.1820 0.0116 5 6 4.1736 2.4175 -0.0103 6 1 5.2458 2.4395 0.1177 7 6 3.4660 3.6121 -0.1981 8 7 2.1598 3.5992 -0.2329 9 14 4.3898 5.2233 -0.3986 10 1 4.5677 5.5153 -1.8437 11 1 3.6157 6.3200 0.2364 12 1 5.7202 5.1154 0.2521 13 6 4.1948 -0.0391 0.0457 14 6 3.4752 -1.2096 0.0106 15 7 2.1470 -1.1529 0.0005 16 6 4.1429 -2.5570 -0.0195 17 6 5.2009 -2.6566 1.0833 18 8 6.4475 -2.2443 0.5303 19 6 6.3364 -1.2282 -0.4701 20 6 5.6922 0.0080 0.1581 21 1 -0.3634 0.0004 1.0277 22 1 -0.3634 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5134 24 1 1.6699 4.4263 -0.3626 25 1 4.6195 -2.7006 -0.9892 26 1 3.3925 -3.3331 0.1309 27 1 5.2746 -3.6867 1.4320 28 1 4.9318 -2.0042 1.9140 29 1 7.3275 -0.9739 -0.8456 30 1 5.7152 -1.5880 -1.2904 31 1 5.9661 0.0569 1.2121 32 1 6.0621 0.8998 -0.3478 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261003819.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:50 Heat of formation + Delta-G solvation = -28.661690 kcal Electronic energy + Delta-G solvation = -16718.732973 eV Core-core repulsion = 14064.203286 eV Total energy + Delta-G solvation = -2654.529687 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.52618 -39.45306 -36.17555 -34.81381 -33.90256 -31.93613 -30.66466 -28.95708 -27.30985 -25.99929 -23.26240 -21.82330 -21.67935 -19.30800 -18.15709 -17.99689 -16.88643 -16.45702 -16.02794 -15.49248 -15.34718 -14.69341 -14.34763 -14.10664 -13.70168 -13.57148 -13.22917 -13.13191 -13.06448 -12.72552 -12.62712 -12.42914 -12.31638 -11.93275 -11.70212 -11.46906 -10.74781 -10.50424 -10.36255 -9.48926 -9.34265 -8.38105 -6.75823 0.72404 0.98089 1.38630 1.52926 1.53854 2.17010 2.78590 2.95363 3.51615 3.70352 3.89406 4.03018 4.15271 4.25221 4.29355 4.39518 4.48662 4.59924 4.78476 4.83558 4.88793 4.92561 4.96320 5.07051 5.10700 5.18677 5.22449 5.39393 5.63542 5.97851 6.08365 6.25292 6.57610 6.80242 7.15153 8.20891 8.34641 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.023773 B = 0.010304 C = 0.007380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.534705 B = 2716.637479 C = 3793.126073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.278 3.722 3 N -0.551 5.551 4 C 0.235 3.765 5 C -0.444 4.444 6 H 0.103 0.897 7 C 0.023 3.977 8 N -0.744 5.744 9 Si 0.990 3.010 10 H -0.262 1.262 11 H -0.268 1.268 12 H -0.250 1.250 13 C -0.300 4.300 14 C 0.148 3.852 15 N -0.631 5.631 16 C -0.098 4.098 17 C 0.078 3.922 18 O -0.396 6.396 19 C 0.064 3.936 20 C -0.074 4.074 21 H 0.075 0.925 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.283 0.717 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.122 0.878 28 H 0.032 0.968 29 H 0.120 0.880 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.779 -4.217 -0.517 6.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.008 3.992 3 N -0.273 5.273 4 C 0.105 3.895 5 C -0.477 4.477 6 H 0.121 0.879 7 C -0.201 4.201 8 N -0.366 5.366 9 Si 0.809 3.191 10 H -0.187 1.187 11 H -0.193 1.193 12 H -0.173 1.173 13 C -0.309 4.309 14 C 0.010 3.990 15 N -0.355 5.355 16 C -0.136 4.136 17 C 0.001 3.999 18 O -0.315 6.315 19 C -0.012 4.012 20 C -0.113 4.113 21 H 0.094 0.906 22 H 0.087 0.913 23 H 0.101 0.899 24 H 0.094 0.906 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.140 0.860 28 H 0.050 0.950 29 H 0.138 0.862 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.770 -4.181 -0.485 5.651 hybrid contribution 0.416 1.031 -0.055 1.113 sum 4.185 -3.150 -0.540 5.266 Atomic orbital electron populations 1.20261 0.86239 1.02576 1.02669 1.23600 0.98783 0.85041 0.91793 1.69191 1.09480 1.27073 1.21519 1.19404 0.88584 0.93470 0.88025 1.20131 0.95877 0.89962 1.41751 0.87927 1.27137 0.95679 1.04702 0.92541 1.70188 1.08940 1.29980 1.27506 0.85076 0.79261 0.75232 0.79509 1.18711 1.19253 1.17305 1.21065 0.97673 0.94353 1.17779 1.21055 0.89829 0.94887 0.93198 1.68032 1.09551 1.30304 1.27644 1.21109 0.98607 0.92656 1.01207 1.22577 0.82395 1.00938 0.94004 1.87773 1.30074 1.57041 1.56635 1.22843 1.02003 0.85997 0.90338 1.20571 0.90355 0.99829 1.00513 0.90606 0.91286 0.89911 0.90624 0.88455 0.88937 0.86034 0.94956 0.86232 0.92607 0.92707 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.42 10.31 71.24 0.73 -1.68 16 2 C 0.28 14.37 7.64 138.84 1.06 15.43 16 3 N -0.55 -31.43 7.97 -181.22 -1.44 -32.87 16 4 C 0.23 13.00 6.57 40.41 0.27 13.26 16 5 C -0.44 -23.21 8.60 23.54 0.20 -23.01 16 6 H 0.10 4.91 6.03 -2.91 -0.02 4.89 16 7 C 0.02 1.15 5.49 85.32 0.47 1.62 16 8 N -0.74 -39.31 11.55 21.85 0.25 -39.05 16 9 Si 0.99 36.47 29.56 68.60 2.03 38.49 16 10 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 11 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 12 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 13 C -0.30 -14.54 5.56 -19.43 -0.11 -14.65 16 14 C 0.15 6.80 6.07 42.11 0.26 7.05 16 15 N -0.63 -31.21 10.18 -176.99 -1.80 -33.01 16 16 C -0.10 -3.40 5.37 29.80 0.16 -3.24 16 17 C 0.08 2.42 6.70 72.03 0.48 2.90 16 18 O -0.40 -12.71 10.73 -148.98 -1.60 -14.31 16 19 C 0.06 2.04 6.45 71.95 0.46 2.51 16 20 C -0.07 -2.93 4.75 29.67 0.14 -2.79 16 21 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 22 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 23 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 24 H 0.28 13.40 8.29 -92.71 -0.77 12.64 16 25 H 0.10 3.14 5.95 -2.38 -0.01 3.13 16 26 H 0.09 2.99 8.09 -2.39 -0.02 2.97 16 27 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 28 H 0.03 1.15 7.73 -2.39 -0.02 1.13 16 29 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.06 1.81 5.43 -2.39 -0.01 1.80 16 31 H 0.05 2.21 8.03 -2.38 -0.02 2.19 16 32 H 0.08 3.03 6.22 -2.39 -0.01 3.02 16 Total: -1.00 -65.27 261.32 2.70 -62.57 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 1.14 Total: 20.80 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 4.13 Total: -2.60 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -2.99 Total: -104.94 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -1.60 Total: -14.31 kcal Atomic # 14 Polarization: 36.47 SS G_CDS: 2.03 Total: 38.49 kcal Total: -65.27 2.70 -62.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261003819.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.905 kcal (2) G-P(sol) polarization free energy of solvation -65.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds