Wall clock time and date at job start Mon Mar 30 2020 02:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99773 * 2 1 4 4 H 1.48501 * 109.47545 * 239.99837 * 3 2 1 5 5 H 1.48501 * 109.47136 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47001 * 119.99991 * 3 2 1 7 7 C 1.37877 * 120.00521 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00186 * 172.15487 * 7 2 1 9 9 C 1.50699 * 119.99704 * 352.15740 * 7 2 1 10 10 N 1.46894 * 113.53812 * 308.48079 * 9 7 2 11 11 C 1.46900 * 111.00148 * 291.43091 * 10 9 7 12 12 C 1.50702 * 109.47451 * 182.61365 * 11 10 9 13 13 C 1.38651 * 120.78579 * 269.71628 * 12 11 10 14 14 C 1.38204 * 119.15949 * 179.79348 * 13 12 11 15 15 N 1.31872 * 120.76543 * 0.49749 * 14 13 12 16 16 C 1.31869 * 121.72145 * 359.73252 * 15 14 13 17 17 C 1.38203 * 120.76907 * 0.02562 * 16 15 14 18 18 C 1.53365 * 114.56783 * 174.23323 * 9 7 2 19 19 O 1.43345 * 88.44960 * 220.37654 * 18 9 7 20 20 C 1.43351 * 88.32265 * 28.15069 * 19 18 9 21 21 H 0.96994 * 120.00144 * 359.97438 * 1 2 3 22 22 H 1.00906 * 111.00173 * 55.38153 * 10 9 7 23 23 H 1.09008 * 109.47160 * 302.61361 * 11 10 9 24 24 H 1.09002 * 109.46942 * 62.61011 * 11 10 9 25 25 H 1.08003 * 120.41877 * 0.02562 * 13 12 11 26 26 H 1.08001 * 119.61767 * 180.20329 * 14 13 12 27 27 H 1.08001 * 119.61461 * 180.02562 * 16 15 14 28 28 H 1.07997 * 120.41851 * 179.97438 * 17 16 15 29 29 H 1.08999 * 113.38930 * 105.47464 * 18 9 7 30 30 H 1.09006 * 113.43604 * 335.28584 * 18 9 7 31 31 H 1.09000 * 113.39100 * 86.74749 * 20 19 18 32 32 H 1.08997 * 113.39382 * 216.95034 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0770 -1.1982 -0.1282 9 6 1.2618 -2.4931 0.1770 10 7 0.3748 -2.5064 1.3478 11 6 1.1498 -2.4901 2.5956 12 6 0.2106 -2.5691 3.7715 13 6 -0.2943 -1.4173 4.3552 14 6 -1.1566 -1.5290 5.4294 15 7 -1.4918 -2.7124 5.9051 16 6 -1.0273 -3.8284 5.3782 17 6 -0.1645 -3.7952 4.2991 18 6 2.1271 -3.7493 0.0183 19 8 1.0425 -4.3592 -0.6933 20 6 0.6321 -3.0492 -1.1062 21 1 -0.4850 0.8400 0.0004 22 1 -0.2767 -1.7365 1.3168 23 1 1.8274 -3.3439 2.6138 24 1 1.7269 -1.5671 2.6529 25 1 -0.0202 -0.4451 3.9727 26 1 -1.5569 -0.6367 5.8876 27 1 -1.3246 -4.7794 5.7947 28 1 0.2128 -4.7127 3.8722 29 1 2.3546 -4.2404 0.9644 30 1 3.0132 -3.5906 -0.5965 31 1 1.1275 -2.7070 -2.0148 32 1 -0.4502 -2.9270 -1.1453 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261111870.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:29 Heat of formation + Delta-G solvation = 26.016133 kcal Electronic energy + Delta-G solvation = -16417.238003 eV Core-core repulsion = 13765.079324 eV Total energy + Delta-G solvation = -2652.158678 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.85697 -39.43269 -34.96303 -32.96971 -31.09025 -30.85208 -28.06127 -25.37586 -24.78354 -24.32619 -23.07957 -21.16948 -18.66453 -17.08575 -16.35961 -15.92906 -15.30073 -15.18604 -14.97566 -14.33264 -14.04930 -13.71538 -13.48607 -13.28103 -12.78933 -12.27585 -11.92348 -11.35936 -11.19689 -11.18641 -10.92792 -10.68633 -10.64751 -9.66968 -9.32357 -9.17515 -9.13356 -8.81605 -8.72596 -8.54337 -7.27423 -6.24725 -4.42212 1.48027 1.63222 3.13113 3.20263 3.22463 4.14847 4.18698 4.73669 4.88950 5.03690 5.13174 5.22626 5.50502 5.52998 5.65971 5.87686 5.95540 5.98716 6.18765 6.33949 6.35899 6.41761 6.53140 6.73979 6.87622 6.95357 7.05945 7.23081 7.27288 7.55780 7.78967 8.25788 8.34107 8.61907 8.81822 9.28441 10.71831 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.021477 B = 0.009338 C = 0.007076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.384383 B = 2997.621043 C = 3955.969020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.076 3.924 3 Si 0.892 3.108 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.190 3.810 10 N -0.657 5.657 11 C 0.101 3.899 12 C -0.019 4.019 13 C -0.164 4.164 14 C 0.090 3.910 15 N -0.498 5.498 16 C 0.087 3.913 17 C -0.156 4.156 18 C 0.030 3.970 19 O -0.388 6.388 20 C 0.046 3.954 21 H 0.269 0.731 22 H 0.366 0.634 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.132 0.868 26 H 0.149 0.851 27 H 0.149 0.851 28 H 0.132 0.868 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.722 -2.505 6.344 6.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.128 4.128 3 Si 0.719 3.281 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.081 0.919 9 C 0.099 3.901 10 N -0.293 5.293 11 C -0.029 4.029 12 C -0.028 4.028 13 C -0.184 4.184 14 C -0.066 4.066 15 N -0.207 5.207 16 C -0.069 4.069 17 C -0.176 4.176 18 C -0.047 4.047 19 O -0.307 6.307 20 C -0.032 4.032 21 H 0.079 0.921 22 H 0.190 0.810 23 H 0.085 0.915 24 H 0.065 0.935 25 H 0.150 0.850 26 H 0.167 0.833 27 H 0.167 0.833 28 H 0.150 0.850 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.203 -3.378 6.992 7.768 hybrid contribution 1.385 2.141 -0.849 2.688 sum 1.182 -1.237 6.143 6.377 Atomic orbital electron populations 1.69713 1.05852 1.27632 1.48933 1.25014 0.94865 0.99271 0.93695 0.86652 0.79796 0.82721 0.78939 1.19995 1.21047 1.20082 1.21507 0.94413 0.91054 1.51631 0.91935 1.20494 0.89438 0.91783 0.88355 1.60737 1.17936 1.51772 0.98864 1.20668 0.93414 1.01040 0.87729 1.20549 0.94789 0.92620 0.94793 1.22136 0.99029 0.99697 0.97546 1.22623 0.94797 0.95363 0.93859 1.67601 1.23818 0.98741 1.30580 1.22644 0.94174 0.96565 0.93523 1.22041 0.99472 0.98652 0.97481 1.23869 0.91459 0.94200 0.95219 1.89629 1.43843 1.26676 1.70576 1.23796 1.00185 0.80632 0.98558 0.92115 0.81042 0.91487 0.93526 0.85022 0.83317 0.83319 0.84981 0.91925 0.91733 0.91648 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.45 11.48 55.43 0.64 -21.82 16 2 C 0.08 1.87 5.34 -17.82 -0.10 1.78 16 3 Si 0.89 19.48 29.54 -169.99 -5.02 14.46 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.55 -13.53 7.91 -34.44 -0.27 -13.80 16 8 H 0.06 1.54 7.83 -52.49 -0.41 1.13 16 9 C 0.19 4.41 0.70 -132.38 -0.09 4.32 16 10 N -0.66 -14.71 6.35 -103.42 -0.66 -15.36 16 11 C 0.10 1.97 5.55 -4.98 -0.03 1.94 16 12 C -0.02 -0.33 5.45 -104.32 -0.57 -0.90 16 13 C -0.16 -2.72 9.82 -39.44 -0.39 -3.10 16 14 C 0.09 1.38 11.18 -17.55 -0.20 1.19 16 15 N -0.50 -8.01 10.36 -13.25 -0.14 -8.15 16 16 C 0.09 1.30 11.18 -17.55 -0.20 1.10 16 17 C -0.16 -2.45 9.82 -39.44 -0.39 -2.84 16 18 C 0.03 0.64 7.90 24.59 0.19 0.84 16 19 O -0.39 -8.96 12.74 -35.23 -0.45 -9.41 16 20 C 0.05 1.07 8.16 24.60 0.20 1.27 16 21 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 22 H 0.37 8.85 6.68 -39.29 -0.26 8.59 16 23 H 0.07 1.24 6.56 -51.92 -0.34 0.90 16 24 H 0.05 0.98 7.62 -51.93 -0.40 0.58 16 25 H 0.13 2.14 8.06 -52.48 -0.42 1.72 16 26 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 29 H 0.06 1.23 6.68 -51.93 -0.35 0.89 16 30 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 31 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 32 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 275.07 15.07 4.15 4.15 Total: -1.00 -26.79 275.07 -7.16 -33.94 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -3.85 Total: 10.41 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -1.83 Total: -8.22 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -0.16 Total: -45.33 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.45 Total: -9.41 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -26.79 -7.16 -33.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111870.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.961 kcal (2) G-P(sol) polarization free energy of solvation -26.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds