Wall clock time and date at job start Mon Mar 30 2020 03:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47350 * 321.66286 * 3 2 1 5 5 C 1.37097 * 119.99835 * 263.82585 * 4 3 2 6 6 H 1.08005 * 119.99800 * 201.49621 * 5 4 3 7 7 C 1.38941 * 120.00071 * 21.49051 * 5 4 3 8 8 N 1.31417 * 120.00547 * 10.93280 * 7 5 4 9 9 Si 1.86800 * 120.00151 * 190.92881 * 7 5 4 10 10 H 1.48506 * 109.47126 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47235 * 119.99797 * 9 7 5 12 12 H 1.48497 * 109.47493 * 240.00243 * 9 7 5 13 13 C 1.34774 * 119.99997 * 83.82243 * 4 3 2 14 14 O 1.21290 * 120.00389 * 184.83210 * 13 4 3 15 15 C 1.50700 * 120.00375 * 4.82695 * 13 4 3 16 16 H 1.09005 * 110.43434 * 328.18646 * 15 13 4 17 17 C 1.51098 * 110.39299 * 205.83590 * 15 13 4 18 18 C 1.30522 * 111.10305 * 224.75273 * 17 15 13 19 19 C 1.51102 * 111.10871 * 359.97438 * 18 17 15 20 20 H 1.09005 * 110.38689 * 257.51452 * 19 18 17 21 21 N 1.46898 * 110.39170 * 135.24655 * 19 18 17 22 22 C 1.54636 * 104.72347 * 16.43552 * 19 18 17 23 23 H 4.40644 * 5.51479 * 179.97438 * 4 1 2 24 24 H 1.08999 * 109.46796 * 201.65817 * 3 2 1 25 25 H 1.09000 * 109.46997 * 81.66375 * 3 2 1 26 26 H 0.96996 * 120.00434 * 179.97438 * 8 7 5 27 27 H 1.07999 * 124.45016 * 44.77031 * 17 15 13 28 28 H 1.08003 * 124.45033 * 179.97438 * 18 17 15 29 29 H 1.00900 * 110.99664 * 61.45455 * 21 19 18 30 30 H 1.00893 * 111.00307 * 185.40896 * 21 19 18 31 31 H 1.09004 * 111.03901 * 217.34116 * 22 19 18 32 32 H 1.08997 * 111.03573 * 93.40070 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0825 0.8567 5 6 3.4836 -0.8237 2.1571 6 1 4.1498 -1.4932 2.6810 7 6 2.9803 0.3000 2.8009 8 7 2.0108 0.9946 2.2488 9 14 3.6814 0.8235 4.4513 10 1 4.7568 -0.1184 4.8535 11 1 4.2413 2.1943 4.3389 12 1 2.6041 0.8110 5.4733 13 6 3.2416 -2.3334 0.3666 14 8 3.5622 -3.2462 1.0982 15 6 2.9627 -2.5982 -1.0905 16 1 2.2018 -1.9124 -1.4631 17 6 2.5241 -4.0302 -1.2908 18 6 3.1270 -4.5673 -2.3163 19 6 4.0678 -3.5829 -2.9713 20 1 3.6224 -3.1795 -3.8808 21 7 5.3529 -4.2270 -3.2741 22 6 4.2601 -2.4645 -1.9209 23 1 -1.0499 -0.0002 0.0004 24 1 3.0088 0.9559 0.3793 25 1 3.0094 -0.1482 -1.0168 26 1 1.6592 1.7788 2.6985 27 1 1.8058 -4.5420 -0.6675 28 1 2.9736 -5.5821 -2.6526 29 1 5.2302 -4.9932 -3.9191 30 1 6.0179 -3.5572 -3.6306 31 1 4.3207 -1.4861 -2.3977 32 1 5.1395 -2.6530 -1.3052 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300800248.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:05 Heat of formation + Delta-G solvation = 57.750667 kcal Electronic energy + Delta-G solvation = -16437.435761 eV Core-core repulsion = 13786.653196 eV Total energy + Delta-G solvation = -2650.782566 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.49306 -37.38153 -35.06229 -32.64136 -31.96359 -31.17387 -28.89177 -26.60527 -26.05735 -24.26595 -20.99390 -19.34565 -18.17697 -17.74867 -16.73846 -16.29474 -15.63111 -15.07812 -15.03694 -14.40388 -13.90376 -13.81618 -12.81335 -12.35187 -12.19174 -12.01872 -11.61722 -11.44847 -11.25328 -11.01845 -10.85364 -10.81509 -10.43960 -10.28377 -9.37367 -9.29334 -8.99646 -8.81662 -8.56074 -8.16852 -7.79850 -6.26123 -3.87306 2.61469 3.16021 3.27078 3.33682 3.69406 3.92491 4.10509 4.21492 4.70328 4.84329 4.94067 5.10017 5.16611 5.38634 5.49270 5.66208 5.75822 5.84254 5.94704 6.16494 6.30552 6.41664 6.51817 6.78549 6.85206 7.09115 7.18541 7.24729 7.50895 7.57852 8.11150 8.47804 8.84499 9.17996 9.39280 9.95867 10.73497 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.032417 B = 0.007786 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.543957 B = 3595.365062 C = 4006.369556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.107 4.107 3 C 0.232 3.768 4 N -0.445 5.445 5 C -0.306 4.306 6 H 0.101 0.899 7 C 0.028 3.972 8 N -0.875 5.875 9 Si 0.926 3.074 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.465 3.535 14 O -0.576 6.576 15 C -0.087 4.087 16 H 0.094 0.906 17 C -0.102 4.102 18 C -0.179 4.179 19 C 0.115 3.885 20 H 0.043 0.957 21 N -0.840 5.840 22 C -0.104 4.104 23 H 0.198 0.802 24 H 0.115 0.885 25 H 0.057 0.943 26 H 0.267 0.733 27 H 0.125 0.875 28 H 0.121 0.879 29 H 0.337 0.663 30 H 0.339 0.661 31 H 0.071 0.929 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 -2.002 -10.962 11.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.109 4.109 3 C 0.109 3.891 4 N -0.163 5.163 5 C -0.434 4.434 6 H 0.119 0.881 7 C -0.175 4.175 8 N -0.514 5.514 9 Si 0.753 3.247 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.209 1.209 13 C 0.253 3.747 14 O -0.459 6.459 15 C -0.109 4.109 16 H 0.112 0.888 17 C -0.122 4.122 18 C -0.198 4.198 19 C 0.005 3.995 20 H 0.061 0.939 21 N -0.370 5.370 22 C -0.142 4.142 23 H 0.215 0.785 24 H 0.133 0.867 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.143 0.857 28 H 0.139 0.861 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.090 0.910 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.308 -2.425 -9.734 10.117 hybrid contribution -0.441 0.757 -0.055 0.878 sum 0.868 -1.668 -9.790 9.968 Atomic orbital electron populations 1.24256 0.95382 1.03464 1.05628 1.23238 0.94411 0.97549 0.95703 1.18305 0.84123 0.94539 0.92121 1.43686 1.56392 1.05164 1.11104 1.19734 1.26300 1.09287 0.88079 0.88099 1.25342 0.95274 0.97419 0.99461 1.69979 1.23784 1.18518 1.39097 0.85862 0.78889 0.78365 0.81603 1.19286 1.20704 1.20861 1.19908 0.83422 0.82798 0.88577 1.90526 1.52172 1.43067 1.60113 1.21131 0.97919 0.96333 0.95512 0.88787 1.22894 0.98876 0.94803 0.95582 1.22910 0.99118 0.98735 0.99005 1.21157 0.88736 0.93258 0.96389 0.93911 1.58765 1.10767 1.14363 1.53067 1.22509 0.98119 0.97260 0.96318 0.78475 0.86696 0.92481 0.92236 0.85737 0.86101 0.85071 0.84885 0.91044 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.64 19.25 29.55 0.57 -5.07 16 2 C -0.11 -2.44 10.76 -37.12 -0.40 -2.83 16 3 C 0.23 5.18 4.78 -6.83 -0.03 5.15 16 4 N -0.44 -11.35 2.60 -117.93 -0.31 -11.66 16 5 C -0.31 -8.52 9.29 -14.94 -0.14 -8.66 16 6 H 0.10 2.95 7.43 -52.48 -0.39 2.56 16 7 C 0.03 0.73 5.10 -17.47 -0.09 0.64 16 8 N -0.87 -23.09 9.06 55.50 0.50 -22.59 16 9 Si 0.93 20.83 29.57 -169.99 -5.03 15.81 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 C 0.46 11.52 6.59 -10.99 -0.07 11.45 16 14 O -0.58 -16.46 16.05 5.55 0.09 -16.37 16 15 C -0.09 -1.68 2.36 -91.88 -0.22 -1.89 16 16 H 0.09 1.73 6.13 -51.93 -0.32 1.41 16 17 C -0.10 -1.85 9.52 -35.70 -0.34 -2.19 16 18 C -0.18 -2.74 10.39 -35.70 -0.37 -3.11 16 19 C 0.12 1.60 4.02 -67.81 -0.27 1.33 16 20 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 21 N -0.84 -10.27 9.26 -4.75 -0.04 -10.31 16 22 C -0.10 -1.69 6.19 -25.02 -0.15 -1.85 16 23 H 0.20 3.39 7.80 -54.10 -0.42 2.97 16 24 H 0.12 2.71 6.38 -51.93 -0.33 2.38 16 25 H 0.06 1.06 6.34 -51.93 -0.33 0.73 16 26 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 28 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 29 H 0.34 3.36 9.06 -39.29 -0.36 3.00 16 30 H 0.34 3.49 9.05 -39.30 -0.36 3.13 16 31 H 0.07 1.00 7.92 -51.93 -0.41 0.58 16 32 H 0.09 1.63 7.85 -51.93 -0.41 1.22 16 LS Contribution 276.64 15.07 4.17 4.17 Total: -1.00 -32.04 276.64 -5.86 -37.90 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -3.72 Total: 10.09 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -1.52 Total: -7.04 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.15 Total: -44.56 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: 0.09 Total: -16.37 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.04 -5.86 -37.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300800248.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.650 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds