Wall clock time and date at job start Mon Mar 30 2020 03:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47350 * 321.66286 * 3 2 1 5 5 C 1.37097 * 119.99835 * 263.82585 * 4 3 2 6 6 H 1.08005 * 119.99800 * 201.49621 * 5 4 3 7 7 C 1.38941 * 120.00071 * 21.49051 * 5 4 3 8 8 N 1.31417 * 120.00547 * 10.93280 * 7 5 4 9 9 Si 1.86800 * 120.00151 * 190.92881 * 7 5 4 10 10 H 1.48506 * 109.47126 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47235 * 119.99797 * 9 7 5 12 12 H 1.48497 * 109.47493 * 240.00243 * 9 7 5 13 13 C 1.34774 * 119.99997 * 83.82243 * 4 3 2 14 14 O 1.21290 * 120.00389 * 184.83210 * 13 4 3 15 15 C 1.50700 * 120.00375 * 4.82695 * 13 4 3 16 16 H 1.09005 * 110.43434 * 328.18646 * 15 13 4 17 17 C 1.51098 * 110.39299 * 205.83590 * 15 13 4 18 18 C 1.30522 * 111.10305 * 224.75273 * 17 15 13 19 19 C 1.51102 * 111.10871 * 359.97438 * 18 17 15 20 20 H 1.09005 * 110.38689 * 257.51452 * 19 18 17 21 21 N 1.46898 * 110.39170 * 135.24655 * 19 18 17 22 22 C 1.54636 * 104.72347 * 16.43552 * 19 18 17 23 23 H 4.40644 * 5.51479 * 179.97438 * 4 1 2 24 24 H 1.08999 * 109.46796 * 201.65817 * 3 2 1 25 25 H 1.09000 * 109.46997 * 81.66375 * 3 2 1 26 26 H 0.96996 * 120.00434 * 179.97438 * 8 7 5 27 27 H 1.07999 * 124.45016 * 44.77031 * 17 15 13 28 28 H 1.08003 * 124.45033 * 179.97438 * 18 17 15 29 29 H 1.00900 * 110.99664 * 61.45455 * 21 19 18 30 30 H 1.00893 * 111.00307 * 185.40896 * 21 19 18 31 31 H 1.09004 * 111.03901 * 217.34116 * 22 19 18 32 32 H 1.08997 * 111.03573 * 93.40070 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0825 0.8567 5 6 3.4836 -0.8237 2.1571 6 1 4.1498 -1.4932 2.6810 7 6 2.9803 0.3000 2.8009 8 7 2.0108 0.9946 2.2488 9 14 3.6814 0.8235 4.4513 10 1 4.7568 -0.1184 4.8535 11 1 4.2413 2.1943 4.3389 12 1 2.6041 0.8110 5.4733 13 6 3.2416 -2.3334 0.3666 14 8 3.5622 -3.2462 1.0982 15 6 2.9627 -2.5982 -1.0905 16 1 2.2018 -1.9124 -1.4631 17 6 2.5241 -4.0302 -1.2908 18 6 3.1270 -4.5673 -2.3163 19 6 4.0678 -3.5829 -2.9713 20 1 3.6224 -3.1795 -3.8808 21 7 5.3529 -4.2270 -3.2741 22 6 4.2601 -2.4645 -1.9209 23 1 -1.0499 -0.0002 0.0004 24 1 3.0088 0.9559 0.3793 25 1 3.0094 -0.1482 -1.0168 26 1 1.6592 1.7788 2.6985 27 1 1.8058 -4.5420 -0.6675 28 1 2.9736 -5.5821 -2.6526 29 1 5.2302 -4.9932 -3.9191 30 1 6.0179 -3.5572 -3.6306 31 1 4.3207 -1.4861 -2.3977 32 1 5.1395 -2.6530 -1.3052 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300800248.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:05 Heat of formation + Delta-G solvation = 35.309859 kcal Electronic energy + Delta-G solvation = -16438.408868 eV Core-core repulsion = 13786.653196 eV Total energy + Delta-G solvation = -2651.755672 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.12763 -38.92832 -37.01208 -34.13078 -33.54264 -33.02351 -30.31267 -28.32477 -27.55991 -26.07913 -22.46667 -20.84308 -19.75979 -19.45103 -18.50848 -18.05616 -16.99964 -16.72365 -16.09854 -15.98181 -15.71998 -15.53420 -14.53645 -14.11712 -13.89205 -13.58338 -13.25384 -12.91553 -12.89190 -12.59790 -12.54800 -12.25164 -12.09605 -12.02503 -11.26532 -11.07864 -10.61677 -10.45320 -10.03844 -9.79156 -9.43023 -8.27672 -5.97558 1.31074 1.35162 1.41072 1.54188 1.88805 2.14012 2.33347 2.40419 3.06701 3.21888 3.57673 3.69300 3.80884 3.89415 4.14907 4.30872 4.36771 4.51134 4.56104 4.68571 4.93055 5.04096 5.06801 5.17509 5.43880 5.44797 5.50261 5.91333 6.08923 6.31752 6.47475 6.72249 7.14231 7.16222 7.42949 8.00476 8.68953 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.032417 B = 0.007786 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.543957 B = 3595.365062 C = 4006.369556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.150 4.150 3 C 0.236 3.764 4 N -0.455 5.455 5 C -0.346 4.346 6 H 0.071 0.929 7 C -0.001 4.001 8 N -0.881 5.881 9 Si 0.988 3.012 10 H -0.276 1.276 11 H -0.263 1.263 12 H -0.280 1.280 13 C 0.453 3.547 14 O -0.628 6.628 15 C -0.077 4.077 16 H 0.102 0.898 17 C -0.149 4.149 18 C -0.148 4.148 19 C 0.121 3.879 20 H 0.076 0.924 21 N -0.851 5.851 22 C -0.102 4.102 23 H 0.233 0.767 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.271 0.729 27 H 0.110 0.890 28 H 0.147 0.853 29 H 0.353 0.647 30 H 0.352 0.648 31 H 0.098 0.902 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.894 -1.499 -12.779 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.151 4.151 3 C 0.113 3.887 4 N -0.173 5.173 5 C -0.474 4.474 6 H 0.089 0.911 7 C -0.203 4.203 8 N -0.519 5.519 9 Si 0.812 3.188 10 H -0.201 1.201 11 H -0.188 1.188 12 H -0.206 1.206 13 C 0.243 3.757 14 O -0.515 6.515 15 C -0.098 4.098 16 H 0.120 0.880 17 C -0.168 4.168 18 C -0.167 4.167 19 C 0.010 3.990 20 H 0.093 0.907 21 N -0.384 5.384 22 C -0.140 4.140 23 H 0.249 0.751 24 H 0.116 0.884 25 H 0.111 0.889 26 H 0.081 0.919 27 H 0.128 0.872 28 H 0.165 0.835 29 H 0.167 0.833 30 H 0.166 0.834 31 H 0.117 0.883 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.014 -1.892 -11.596 11.793 hybrid contribution -0.382 0.576 0.488 0.846 sum 0.632 -1.316 -11.109 11.204 Atomic orbital electron populations 1.25139 0.96379 1.01636 1.03891 1.23521 0.95084 0.99218 0.97321 1.18341 0.84452 0.92685 0.93179 1.43905 1.56209 1.06353 1.10844 1.19638 1.27720 1.10164 0.89849 0.91137 1.26020 0.95212 0.96661 1.02392 1.70089 1.23575 1.18293 1.39930 0.84962 0.77959 0.78383 0.77522 1.20124 1.18772 1.20581 1.20946 0.81976 0.81927 0.90849 1.90469 1.54406 1.44553 1.62095 1.21078 0.99665 0.97473 0.91621 0.88014 1.22830 1.01344 0.94822 0.97842 1.23310 0.96692 0.99678 0.96974 1.21094 0.89436 0.91954 0.96511 0.90674 1.58645 1.10154 1.15296 1.54258 1.22532 0.95179 0.99986 0.96302 0.75088 0.88417 0.88893 0.91854 0.87171 0.83523 0.83272 0.83421 0.88316 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.17 19.25 74.32 1.43 -8.74 16 2 C -0.15 -6.71 10.76 31.13 0.33 -6.37 16 3 C 0.24 10.55 4.78 84.57 0.40 10.95 16 4 N -0.46 -23.96 2.60 -645.42 -1.68 -25.64 16 5 C -0.35 -20.03 9.29 84.04 0.78 -19.25 16 6 H 0.07 4.40 7.43 -2.91 -0.02 4.38 16 7 C 0.00 -0.04 5.10 84.92 0.43 0.40 16 8 N -0.88 -46.44 9.06 21.66 0.20 -46.25 16 9 Si 0.99 43.16 29.57 68.60 2.03 45.18 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 C 0.45 23.25 6.59 87.66 0.58 23.83 16 14 O -0.63 -37.91 16.05 -3.06 -0.05 -37.96 16 15 C -0.08 -2.94 2.36 -11.61 -0.03 -2.97 16 16 H 0.10 3.65 6.13 -2.38 -0.01 3.64 16 17 C -0.15 -5.34 9.52 26.27 0.25 -5.09 16 18 C -0.15 -4.19 10.39 26.27 0.27 -3.91 16 19 C 0.12 2.97 4.02 44.85 0.18 3.15 16 20 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 21 N -0.85 -18.12 9.26 -168.93 -1.56 -19.69 16 22 C -0.10 -3.16 6.19 31.70 0.20 -2.97 16 23 H 0.23 7.26 7.80 -4.42 -0.03 7.22 16 24 H 0.10 4.66 6.38 -2.39 -0.02 4.64 16 25 H 0.09 3.37 6.34 -2.39 -0.02 3.35 16 26 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 27 H 0.11 4.16 8.06 -2.91 -0.02 4.14 16 28 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 29 H 0.35 5.71 9.06 -89.69 -0.81 4.90 16 30 H 0.35 6.13 9.05 -89.70 -0.81 5.32 16 31 H 0.10 2.48 7.92 -2.38 -0.02 2.46 16 32 H 0.06 2.18 7.85 -2.39 -0.02 2.16 16 Total: -1.00 -71.87 276.64 3.29 -68.59 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -0.48 Total: 26.73 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 4.83 Total: -10.98 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -3.05 Total: -91.57 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.05 Total: -37.96 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -71.87 3.29 -68.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300800248.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.897 kcal (2) G-P(sol) polarization free energy of solvation -71.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds