Wall clock time and date at job start Mon Mar 30 2020 03:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31813 * 119.12073 * 2 1 4 4 C 1.32318 * 120.81731 * 180.02562 * 3 2 1 5 5 C 1.38614 * 119.10366 * 359.97438 * 4 3 2 6 6 C 1.38585 * 118.39957 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.44650 * 179.72519 * 6 5 4 8 8 H 1.08997 * 110.33095 * 247.24844 * 7 6 5 9 9 C 1.54477 * 110.37296 * 124.99580 * 7 6 5 10 10 C 1.54507 * 104.06645 * 217.18637 * 9 7 6 11 11 C 1.54476 * 104.06000 * 0.02562 * 10 9 7 12 12 H 1.08993 * 110.37487 * 265.14197 * 11 10 9 13 13 C 1.50709 * 110.37177 * 142.80594 * 11 10 9 14 14 H 1.08000 * 119.99584 * 0.02562 * 13 11 10 15 15 C 1.37873 * 120.00148 * 179.97438 * 13 11 10 16 16 N 1.31509 * 120.00028 * 180.02562 * 15 13 11 17 17 Si 1.86807 * 120.00009 * 0.02562 * 15 13 11 18 18 H 1.48503 * 109.46815 * 89.99599 * 17 15 13 19 19 H 1.48499 * 109.46899 * 209.99748 * 17 15 13 20 20 H 1.48500 * 109.46811 * 330.00086 * 17 15 13 21 21 O 1.44425 * 104.80863 * 23.97836 * 11 10 9 22 22 N 1.31773 * 119.12273 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.46946 * 90.00267 * 1 2 3 24 24 H 1.08999 * 109.47178 * 209.99906 * 1 2 3 25 25 H 1.08999 * 109.47600 * 330.00387 * 1 2 3 26 26 H 1.08004 * 120.44509 * 179.97438 * 4 3 2 27 27 H 1.08000 * 120.80530 * 179.97438 * 5 4 3 28 28 H 1.09007 * 110.51436 * 335.83993 * 9 7 6 29 29 H 1.09005 * 110.50751 * 98.54380 * 9 7 6 30 30 H 1.09004 * 110.50550 * 118.64821 * 10 9 7 31 31 H 1.08994 * 110.51558 * 241.22126 * 10 9 7 32 32 H 0.97006 * 120.00138 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1907 -0.0005 5 6 4.1808 0.0001 -0.0005 6 6 3.4712 -1.1903 -0.0005 7 6 4.1961 -2.5115 -0.0067 8 1 4.0279 -3.0313 -0.9499 9 6 3.7316 -3.3854 1.1794 10 6 5.0174 -4.1079 1.6397 11 6 6.1068 -3.5846 0.6777 12 1 6.2337 -4.2695 -0.1606 13 6 7.4111 -3.4036 1.4108 14 1 7.4754 -3.6355 2.4636 15 6 8.5224 -2.9430 0.7371 16 7 9.6607 -2.7856 1.3767 17 14 8.4113 -2.5427 -1.0842 18 1 8.0246 -1.1192 -1.2553 19 1 9.7307 -2.7776 -1.7239 20 1 7.3903 -3.4130 -1.7208 21 8 5.6093 -2.3102 0.2148 22 7 2.1483 -1.1511 -0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 3.9905 2.1376 -0.0009 27 1 5.2608 0.0000 -0.0013 28 1 3.3358 -2.7620 1.9812 29 1 2.9840 -4.1079 0.8516 30 1 5.2573 -3.8417 2.6691 31 1 4.9047 -5.1876 1.5418 32 1 10.4425 -2.4612 0.9029 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309104583.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:54 Heat of formation + Delta-G solvation = -20.996006 kcal Electronic energy + Delta-G solvation = -16302.519221 eV Core-core repulsion = 13648.321943 eV Total energy + Delta-G solvation = -2654.197278 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.16608 -40.10537 -35.35887 -34.64055 -34.20911 -32.85702 -30.87796 -29.33045 -27.29882 -24.86292 -23.81104 -22.37665 -21.71637 -19.29265 -18.48164 -17.67642 -17.28704 -16.42221 -16.33100 -16.05292 -15.83254 -15.16428 -14.73696 -14.55165 -14.26747 -13.78774 -13.47483 -13.19913 -12.88192 -12.72031 -12.62468 -12.17965 -11.89937 -11.82315 -11.70308 -11.48410 -11.35409 -10.87986 -10.54020 -10.33184 -10.25507 -8.38113 -6.51920 -0.11918 -0.01110 1.35282 1.40551 1.49520 2.32434 2.47171 2.66914 3.00378 3.09324 3.39962 3.60502 3.91366 3.97390 4.05235 4.17214 4.34187 4.38487 4.51035 4.55891 4.66254 4.74163 4.88291 4.95326 4.99633 5.05562 5.11863 5.34398 5.45322 5.48904 5.97015 6.16755 6.22118 6.62342 7.04070 7.23285 8.76117 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.035022 B = 0.007554 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.316058 B = 3705.627978 C = 4150.712863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.300 3.700 3 N -0.536 5.536 4 C 0.154 3.846 5 C -0.227 4.227 6 C 0.177 3.823 7 C 0.108 3.892 8 H 0.094 0.906 9 C -0.116 4.116 10 C -0.132 4.132 11 C 0.164 3.836 12 H 0.040 0.960 13 C -0.526 4.526 14 H 0.045 0.955 15 C 0.031 3.969 16 N -0.935 5.935 17 Si 0.957 3.043 18 H -0.272 1.272 19 H -0.290 1.290 20 H -0.251 1.251 21 O -0.393 6.393 22 N -0.524 5.524 23 H 0.100 0.900 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.200 0.800 27 H 0.143 0.857 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.766 4.174 -5.183 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.033 3.967 3 N -0.251 5.251 4 C -0.011 4.011 5 C -0.249 4.249 6 C 0.032 3.968 7 C 0.049 3.951 8 H 0.112 0.888 9 C -0.154 4.154 10 C -0.170 4.170 11 C 0.109 3.891 12 H 0.057 0.943 13 C -0.563 4.563 14 H 0.063 0.937 15 C -0.170 4.170 16 N -0.575 5.575 17 Si 0.782 3.218 18 H -0.198 1.198 19 H -0.217 1.217 20 H -0.175 1.175 21 O -0.313 6.313 22 N -0.240 5.240 23 H 0.118 0.882 24 H 0.112 0.888 25 H 0.115 0.885 26 H 0.217 0.783 27 H 0.161 0.839 28 H 0.079 0.921 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.459 4.399 -5.214 18.744 hybrid contribution 1.718 0.119 -0.351 1.758 sum -15.740 4.518 -5.565 17.296 Atomic orbital electron populations 1.20668 0.82822 1.05079 1.05008 1.24049 0.99811 0.82922 0.89915 1.68345 1.10357 1.30614 1.15805 1.23705 0.89490 0.99251 0.88666 1.22852 1.03758 0.94473 1.03844 1.21497 0.89871 0.95617 0.89860 1.21644 0.82930 0.90543 0.99948 0.88819 1.22681 0.97840 0.98437 0.96429 1.22814 0.93616 1.00867 0.99729 1.21037 0.92723 0.82239 0.93091 0.94265 1.21227 0.92815 1.45389 0.96842 0.93679 1.25906 0.94490 0.93151 1.03414 1.70037 1.02003 1.46410 1.39012 0.85539 0.76884 0.79824 0.79540 1.19779 1.21682 1.17457 1.89226 1.18872 1.36161 1.87031 1.67943 1.08617 1.31456 1.16014 0.88185 0.88772 0.88480 0.78320 0.83911 0.92067 0.87860 0.92662 0.89316 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.32 71.24 0.74 -0.62 16 2 C 0.30 8.19 7.64 138.75 1.06 9.25 16 3 N -0.54 -15.05 10.33 -187.84 -1.94 -16.99 16 4 C 0.15 4.24 11.31 84.71 0.96 5.20 16 5 C -0.23 -7.55 9.50 22.44 0.21 -7.34 16 6 C 0.18 6.06 6.07 42.56 0.26 6.32 16 7 C 0.11 3.87 3.79 30.35 0.12 3.99 16 8 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 9 C -0.12 -3.75 6.49 31.61 0.21 -3.54 16 10 C -0.13 -5.01 6.62 31.61 0.21 -4.80 16 11 C 0.16 7.62 2.50 30.35 0.08 7.69 16 12 H 0.04 1.79 7.07 -2.39 -0.02 1.78 16 13 C -0.53 -29.97 9.35 25.60 0.24 -29.73 16 14 H 0.04 2.81 7.81 -2.91 -0.02 2.79 16 15 C 0.03 1.79 5.47 84.65 0.46 2.25 16 16 N -0.94 -57.80 13.96 21.44 0.30 -57.50 16 17 Si 0.96 45.93 26.49 68.60 1.82 47.74 16 18 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.25 -11.26 6.48 99.48 0.64 -10.61 16 21 O -0.39 -17.58 7.90 -148.98 -1.18 -18.76 16 22 N -0.52 -16.23 10.10 -176.03 -1.78 -18.00 16 23 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.20 3.95 8.06 -2.91 -0.02 3.92 16 27 H 0.14 5.16 7.20 -2.91 -0.02 5.14 16 28 H 0.06 2.03 7.87 -2.38 -0.02 2.01 16 29 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 30 H 0.05 2.25 7.71 -2.38 -0.02 2.24 16 31 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 Total: -1.00 -67.73 271.41 2.80 -64.93 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.05 Total: 9.91 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 4.53 Total: -11.33 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -3.42 Total: -92.50 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -1.18 Total: -18.76 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.82 Total: 47.74 kcal Total: -67.73 2.80 -64.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309104583.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.932 kcal (2) G-P(sol) polarization free energy of solvation -67.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds