Wall clock time and date at job start Mon Mar 30 2020 03:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.50700 * 109.47526 * 294.99769 * 4 2 1 6 6 O 1.21291 * 119.99692 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99911 * 180.02562 * 5 4 2 8 8 C 1.37098 * 119.99819 * 180.02562 * 7 5 4 9 9 H 1.08006 * 119.99951 * 359.97438 * 8 7 5 10 10 C 1.38953 * 120.00107 * 179.97438 * 8 7 5 11 11 N 1.31411 * 120.00092 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00020 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47062 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.46971 * 120.00031 * 12 10 8 15 15 H 1.48503 * 109.47111 * 240.00150 * 12 10 8 16 16 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 17 17 C 1.38671 * 120.41452 * 119.99991 * 16 2 1 18 18 C 1.38626 * 118.42012 * 180.02562 * 17 16 2 19 19 C 1.38234 * 119.16099 * 0.02562 * 18 17 16 20 20 N 1.31844 * 120.76134 * 359.97438 * 19 18 17 21 21 C 1.31887 * 121.72803 * 359.70631 * 20 19 18 22 22 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 25 25 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 26 26 H 1.09007 * 109.46669 * 175.00116 * 4 2 1 27 27 H 0.97000 * 120.00167 * 0.02562 * 7 5 4 28 28 H 0.96990 * 120.00052 * 180.02562 * 11 10 8 29 29 H 1.08006 * 120.79168 * 359.97438 * 17 16 2 30 30 H 1.08003 * 120.42446 * 180.02562 * 18 17 16 31 31 H 1.07996 * 119.61777 * 179.97438 * 19 18 17 32 32 H 1.08006 * 119.62010 * 180.30975 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0109 1.0871 2.3633 7 7 1.9852 -0.3914 3.7001 8 6 1.6221 0.3164 4.8167 9 1 1.0608 1.2336 4.7158 10 6 1.9762 -0.1462 6.0782 11 7 2.6597 -1.2619 6.2010 12 14 1.4809 0.8179 7.5996 13 1 0.7237 2.0291 7.1933 14 1 0.6272 -0.0320 8.4679 15 1 2.6984 1.2234 8.3469 16 6 2.0324 -0.7105 -1.2304 17 6 2.8302 -0.0449 -2.1489 18 6 3.2688 -0.7382 -3.2663 19 6 2.8986 -2.0603 -3.4271 20 7 2.1385 -2.6612 -2.5329 21 6 1.7082 -2.0348 -1.4550 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6053 -1.7198 1.2952 26 1 3.1263 -0.7994 1.2057 27 1 2.4897 -1.2149 3.7907 28 1 2.9065 -1.5849 7.0816 29 1 3.1026 0.9892 -1.9976 30 1 3.8919 -0.2515 -4.0021 31 1 3.2358 -2.6072 -4.2951 32 1 1.0912 -2.5616 -0.7420 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339923507.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:55 Heat of formation + Delta-G solvation = -39.886833 kcal Electronic energy + Delta-G solvation = -15710.419783 eV Core-core repulsion = 13055.403338 eV Total energy + Delta-G solvation = -2655.016445 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.28976 -40.12855 -36.69037 -35.68095 -33.28866 -33.08161 -31.00886 -29.04008 -26.60526 -24.98006 -24.36202 -21.92184 -20.67168 -19.78438 -18.19210 -17.64298 -17.20982 -16.50274 -16.04712 -15.88060 -15.64420 -14.97379 -14.87143 -14.34709 -14.01823 -13.91118 -13.65612 -13.47307 -13.09655 -12.80756 -12.41094 -12.20367 -12.14974 -12.08405 -11.75370 -11.46117 -10.68185 -10.35875 -10.23720 -9.99190 -9.83133 -8.46428 -5.95188 0.22158 0.39224 1.36728 1.42024 1.56188 2.06281 2.30199 2.89935 3.19366 3.21235 3.60579 3.81425 3.93325 4.10753 4.14662 4.17490 4.33736 4.42075 4.62715 4.70738 4.74996 4.87857 4.93912 5.05670 5.18291 5.27975 5.40566 5.44665 5.56620 5.83960 6.01075 6.59552 7.07551 7.12840 7.57248 8.11959 8.71355 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.053527 B = 0.004847 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.976890 B = 5775.283716 C = 5975.800069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.019 4.019 3 H 0.073 0.927 4 C -0.113 4.113 5 C 0.441 3.559 6 O -0.624 6.624 7 N -0.576 5.576 8 C -0.333 4.333 9 H 0.081 0.919 10 C -0.014 4.014 11 N -0.922 5.922 12 Si 0.993 3.007 13 H -0.272 1.272 14 H -0.271 1.271 15 H -0.272 1.272 16 C -0.126 4.126 17 C -0.082 4.082 18 C -0.163 4.163 19 C 0.079 3.921 20 N -0.510 5.510 21 C 0.090 3.910 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.395 0.605 28 H 0.277 0.723 29 H 0.147 0.853 30 H 0.166 0.834 31 H 0.180 0.820 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.092 -1.412 -15.640 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.038 4.038 3 H 0.092 0.908 4 C -0.153 4.153 5 C 0.230 3.770 6 O -0.511 6.511 7 N -0.212 5.212 8 C -0.463 4.463 9 H 0.099 0.901 10 C -0.213 4.213 11 N -0.563 5.563 12 Si 0.816 3.184 13 H -0.197 1.197 14 H -0.197 1.197 15 H -0.197 1.197 16 C -0.128 4.128 17 C -0.108 4.108 18 C -0.183 4.183 19 C -0.078 4.078 20 N -0.218 5.218 21 C -0.066 4.066 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.116 0.884 26 H 0.110 0.890 27 H 0.229 0.771 28 H 0.087 0.913 29 H 0.165 0.835 30 H 0.184 0.816 31 H 0.197 0.803 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.512 -1.718 -15.675 15.841 hybrid contribution 0.279 0.829 1.239 1.517 sum 1.791 -0.889 -14.436 14.574 Atomic orbital electron populations 1.21861 0.94017 1.01929 1.02089 1.19624 0.96480 0.98383 0.89342 0.90834 1.21549 1.02671 0.99795 0.91329 1.20849 0.83587 0.87372 0.85226 1.90458 1.45755 1.27910 1.86999 1.42029 1.49885 1.24322 1.04973 1.19742 1.34295 1.07181 0.85052 0.90102 1.26051 0.96395 0.97347 1.01556 1.69682 1.38834 1.21858 1.25961 0.84874 0.78220 0.78034 0.77234 1.19656 1.19669 1.19682 1.20867 0.98986 0.95749 0.97207 1.21858 0.94521 1.01170 0.93263 1.22466 1.01222 0.95830 0.98752 1.23283 0.93520 0.93150 0.97838 1.67704 1.11292 1.39640 1.03211 1.22719 0.97482 0.91766 0.94678 0.92198 0.92199 0.92794 0.88422 0.89001 0.77099 0.91346 0.83505 0.81621 0.80258 0.82687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 8.75 71.98 0.63 -3.77 16 2 C -0.02 -0.56 2.23 -11.54 -0.03 -0.59 16 3 H 0.07 2.40 7.74 -2.39 -0.02 2.38 16 4 C -0.11 -3.83 4.92 29.85 0.15 -3.69 16 5 C 0.44 20.57 7.50 87.66 0.66 21.23 16 6 O -0.62 -33.09 13.54 -3.07 -0.04 -33.13 16 7 N -0.58 -29.58 5.29 -306.98 -1.62 -31.20 16 8 C -0.33 -18.89 9.68 84.04 0.81 -18.07 16 9 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 10 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 11 N -0.92 -50.14 13.05 21.66 0.28 -49.86 16 12 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 15 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 16 C -0.13 -3.20 4.79 -19.78 -0.09 -3.30 16 17 C -0.08 -1.74 9.81 22.47 0.22 -1.52 16 18 C -0.16 -2.81 10.11 22.36 0.23 -2.58 16 19 C 0.08 1.53 11.18 84.69 0.95 2.48 16 20 N -0.51 -13.00 10.36 -195.84 -2.03 -15.03 16 21 C 0.09 2.31 9.95 84.67 0.84 3.16 16 22 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.06 1.66 7.43 -2.39 -0.02 1.65 16 24 H 0.05 2.08 5.95 -2.39 -0.01 2.06 16 25 H 0.10 2.96 7.58 -2.39 -0.02 2.94 16 26 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 27 H 0.40 19.51 7.90 -92.71 -0.73 18.77 16 28 H 0.28 14.07 8.31 -92.72 -0.77 13.30 16 29 H 0.15 2.65 8.00 -2.91 -0.02 2.62 16 30 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.16 3.76 7.19 -2.91 -0.02 3.74 16 Total: -1.00 -66.59 277.19 3.85 -62.75 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.40 Total: 28.47 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 4.83 Total: -6.94 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -3.37 Total: -96.10 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.04 Total: -33.13 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -66.59 3.85 -62.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339923507.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.861 kcal (2) G-P(sol) polarization free energy of solvation -66.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds