Wall clock time and date at job start Mon Mar 30 2020 03:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30580 * 1 3 3 Si 1.86804 * 119.99939 * 2 1 4 4 H 1.48502 * 109.46854 * 274.62906 * 3 2 1 5 5 H 1.48497 * 109.46898 * 34.62650 * 3 2 1 6 6 H 1.48494 * 109.47059 * 154.62725 * 3 2 1 7 7 C 1.40349 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00658 * 196.31676 * 7 2 1 9 9 C 1.40184 * 119.99847 * 16.31381 * 7 2 1 10 10 C 1.39073 * 119.74234 * 204.09300 * 9 7 2 11 11 C 1.42023 * 118.73911 * 180.24807 * 10 9 7 12 12 N 1.32216 * 120.83189 * 179.75636 * 11 10 9 13 13 C 1.46502 * 119.99947 * 179.72099 * 12 11 10 14 14 H 1.09000 * 115.56156 * 25.68054 * 13 12 11 15 15 C 1.52994 * 117.49795 * 171.37872 * 13 12 11 16 16 C 1.52997 * 60.00248 * 107.48561 * 15 13 12 17 17 H 1.08998 * 117.49979 * 252.48597 * 16 15 13 18 18 C 1.52999 * 117.50218 * 107.48933 * 16 15 13 19 19 O 1.42900 * 109.47299 * 116.38937 * 18 16 15 20 20 C 1.46918 * 118.33506 * 359.47940 * 11 10 9 21 21 C 1.34375 * 119.36776 * 0.25109 * 20 11 10 22 22 N 1.36423 * 121.22124 * 359.97438 * 21 20 11 23 23 H 0.97001 * 119.08911 * 179.97438 * 22 21 20 24 24 H 0.97005 * 120.00675 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.62819 * 359.97438 * 10 9 7 26 26 H 1.09000 * 117.50272 * 359.97438 * 15 13 12 27 27 H 1.09005 * 117.51475 * 214.96474 * 15 13 12 28 28 H 1.08999 * 109.47117 * 236.39627 * 18 16 15 29 29 H 1.09004 * 109.47138 * 356.38839 * 18 16 15 30 30 H 0.96696 * 114.00059 * 180.02562 * 19 18 16 31 31 H 1.07999 * 120.31765 * 180.27494 * 20 11 10 32 32 H 1.07999 * 119.39021 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6178 0.0000 4 1 2.3894 2.1029 -1.3955 5 1 1.4895 2.6224 0.7956 6 1 3.5828 1.4140 0.5999 7 6 2.0076 -1.2154 0.0005 8 1 3.0550 -1.2342 0.2633 9 6 1.3491 -2.4052 -0.3399 10 6 1.8405 -3.6219 0.1207 11 6 1.1597 -4.8145 -0.2416 12 7 1.5936 -5.9940 0.1692 13 6 0.8736 -7.2122 -0.2103 14 1 0.2961 -7.1491 -1.1326 15 6 1.5306 -8.5534 0.1218 16 6 0.3119 -8.0809 0.9170 17 1 0.4779 -7.7464 1.9410 18 6 -1.0174 -8.7947 0.6634 19 8 -1.4378 -9.4571 1.8577 20 6 -0.0423 -4.7044 -1.0792 21 6 -0.4575 -3.4907 -1.4797 22 7 0.2162 -2.3595 -1.1226 23 1 -0.1106 -1.4993 -1.4294 24 1 -0.4851 0.8400 -0.0004 25 1 2.7255 -3.6595 0.7383 26 1 2.4986 -8.5295 0.6222 27 1 1.3854 -9.3731 -0.5819 28 1 -1.7711 -8.0649 0.3680 29 1 -0.8899 -9.5279 -0.1331 30 1 -2.2755 -9.9321 1.7700 31 1 -0.5873 -5.5903 -1.3698 32 1 -1.3412 -3.4093 -2.0951 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379980708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:03 Heat of formation + Delta-G solvation = 5.166240 kcal Electronic energy + Delta-G solvation = -15529.726776 eV Core-core repulsion = 12876.663979 eV Total energy + Delta-G solvation = -2653.062798 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.63115 -37.58261 -35.69319 -34.19751 -32.73143 -30.63629 -28.24655 -26.48850 -25.84460 -22.07140 -21.36504 -20.33180 -19.45787 -18.09909 -17.11262 -16.66268 -15.64402 -15.28274 -14.75031 -14.49419 -13.94784 -13.24262 -13.14913 -12.85969 -12.67365 -12.12910 -11.75862 -11.59602 -11.14177 -11.00625 -10.92106 -10.66842 -10.54782 -10.35964 -10.14761 -9.73691 -9.34345 -8.91814 -8.27395 -7.61460 -7.32152 -5.98471 -4.81979 2.55074 2.67373 2.86755 2.92233 3.09464 3.62619 4.11197 4.42064 4.55677 4.68379 5.28907 5.33555 5.47771 5.55033 5.64751 5.79552 5.89476 6.14006 6.21662 6.33218 6.48023 6.65824 6.71883 6.75749 6.83999 6.87506 7.35886 7.63877 7.72700 7.78580 7.94012 8.21374 8.25509 8.75560 8.87892 9.67414 9.70357 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.048860 B = 0.004922 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.926468 B = 5687.311634 C = 5854.662233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.077 3.923 3 Si 0.925 3.075 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.466 4.466 8 H 0.104 0.896 9 C 0.332 3.668 10 C -0.355 4.355 11 C 0.286 3.714 12 N -0.643 5.643 13 C 0.057 3.943 14 H 0.069 0.931 15 C -0.169 4.169 16 C -0.172 4.172 17 H 0.105 0.895 18 C 0.111 3.889 19 O -0.573 6.573 20 C -0.298 4.298 21 C 0.126 3.874 22 N -0.600 5.600 23 H 0.413 0.587 24 H 0.292 0.708 25 H 0.114 0.886 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.372 0.628 31 H 0.114 0.886 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.410 -2.838 -3.972 6.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.142 4.142 3 Si 0.749 3.251 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.499 4.499 8 H 0.122 0.878 9 C 0.223 3.777 10 C -0.383 4.383 11 C 0.126 3.874 12 N -0.370 5.370 13 C -0.057 4.057 14 H 0.086 0.914 15 C -0.207 4.207 16 C -0.192 4.192 17 H 0.123 0.877 18 C 0.033 3.967 19 O -0.377 6.377 20 C -0.328 4.328 21 C -0.004 4.004 22 N -0.211 5.211 23 H 0.254 0.746 24 H 0.104 0.896 25 H 0.132 0.868 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.217 0.783 31 H 0.132 0.868 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.378 -2.938 -3.240 5.527 hybrid contribution -1.341 0.756 -0.844 1.756 sum -4.720 -2.182 -4.084 6.612 Atomic orbital electron populations 1.69343 1.07838 1.30905 1.35974 1.26205 0.94947 1.02439 0.90603 0.85983 0.80724 0.78994 0.79437 1.18998 1.19924 1.17912 1.19554 0.99108 0.89523 1.41680 0.87780 1.17642 0.81516 0.94381 0.84177 1.20233 1.10139 0.88108 1.19867 1.20223 0.87784 0.92786 0.86634 1.73296 1.31920 0.95024 1.36766 1.22109 0.97831 0.91325 0.94405 0.91373 1.23029 0.97060 0.97690 1.02936 1.22444 0.92281 1.04990 0.99472 0.87685 1.21749 0.95208 0.93926 0.85808 1.86531 1.43353 1.71196 1.36669 1.22298 1.04053 0.95620 1.10860 1.21260 0.95178 0.87416 0.96538 1.42067 1.25421 1.08564 1.45021 0.74649 0.89621 0.86751 0.89031 0.90090 0.93818 0.94146 0.78262 0.86793 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -17.59 11.14 55.57 0.62 -16.97 16 2 C 0.08 1.64 5.18 -17.29 -0.09 1.55 16 3 Si 0.93 16.22 29.59 -169.99 -5.03 11.19 16 4 H -0.27 -4.55 7.11 56.52 0.40 -4.15 16 5 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 6 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 7 C -0.47 -10.95 9.03 -38.06 -0.34 -11.30 16 8 H 0.10 2.39 7.90 -52.49 -0.41 1.98 16 9 C 0.33 8.07 6.35 -84.16 -0.53 7.54 16 10 C -0.35 -9.12 9.83 -37.82 -0.37 -9.49 16 11 C 0.29 7.15 6.81 -82.74 -0.56 6.59 16 12 N -0.64 -16.16 10.87 -50.79 -0.55 -16.71 16 13 C 0.06 1.21 5.71 -67.93 -0.39 0.82 16 14 H 0.07 1.37 6.34 -51.93 -0.33 1.04 16 15 C -0.17 -3.14 10.10 -26.74 -0.27 -3.41 16 16 C -0.17 -3.32 5.98 -90.62 -0.54 -3.87 16 17 H 0.11 2.29 8.14 -51.93 -0.42 1.86 16 18 C 0.11 1.72 7.33 37.16 0.27 1.99 16 19 O -0.57 -8.58 13.66 -35.23 -0.48 -9.06 16 20 C -0.30 -6.41 9.37 -37.43 -0.35 -6.76 16 21 C 0.13 2.46 11.15 -16.87 -0.19 2.27 16 22 N -0.60 -12.98 4.87 -10.83 -0.05 -13.03 16 23 H 0.41 8.49 6.40 -40.82 -0.26 8.23 16 24 H 0.29 5.69 8.29 -40.82 -0.34 5.35 16 25 H 0.11 3.00 8.06 -52.49 -0.42 2.58 16 26 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 27 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.54 7.88 -51.93 -0.41 0.14 16 30 H 0.37 3.43 9.12 45.56 0.42 3.84 16 31 H 0.11 2.22 6.26 -52.49 -0.33 1.89 16 32 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 279.06 15.07 4.21 4.21 Total: -1.00 -28.59 279.06 -7.65 -36.24 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -2.99 Total: 18.21 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -3.37 Total: -14.07 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.01 Total: -46.71 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.48 Total: -9.06 kcal Atomic # 14 Polarization: 16.22 SS G_CDS: -5.03 Total: 11.19 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.59 -7.65 -36.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379980708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.410 kcal (2) G-P(sol) polarization free energy of solvation -28.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds