Wall clock time and date at job start Mon Mar 30 2020 03:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34716 * 120.06349 * 89.99847 * 10 9 7 12 12 O 1.21984 * 120.63758 * 0.26989 * 11 10 9 13 13 C 1.41382 * 118.71112 * 180.25048 * 11 10 9 14 14 N 1.30590 * 119.57192 * 0.21365 * 13 11 10 15 15 C 1.33915 * 121.73659 * 359.75580 * 14 13 11 16 16 C 1.35092 * 120.28368 * 359.52411 * 15 14 13 17 17 C 1.50633 * 122.94314 * 180.81588 * 16 15 14 18 18 C 1.52711 * 110.76727 * 342.37257 * 17 16 15 19 19 C 1.53353 * 108.22602 * 50.58630 * 18 17 16 20 20 C 1.50769 * 117.03374 * 179.53775 * 15 14 13 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08003 * 120.21487 * 180.24553 * 13 11 10 25 25 H 1.09007 * 109.37692 * 221.91998 * 17 16 15 26 26 H 1.09007 * 109.01736 * 102.59390 * 17 16 15 27 27 H 1.09007 * 109.70749 * 290.90708 * 18 17 16 28 28 H 1.08997 * 109.71489 * 170.27647 * 18 17 16 29 29 H 1.09004 * 109.69784 * 171.21809 * 19 18 17 30 30 H 1.08998 * 109.70197 * 50.61834 * 19 18 17 31 31 H 1.09008 * 109.22462 * 282.38303 * 20 15 14 32 32 H 1.08999 * 109.22597 * 41.78035 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.6413 -4.1308 1.1534 12 8 2.2496 -3.6850 2.2192 13 6 3.5639 -5.2015 1.1154 14 7 3.9721 -5.6598 -0.0373 15 6 3.5362 -5.1453 -1.1943 16 6 2.6434 -4.1314 -1.1956 17 6 2.0999 -3.5202 -2.4605 18 6 2.9824 -3.8740 -3.6555 19 6 3.2029 -5.3916 -3.6563 20 6 4.0853 -5.7482 -2.4624 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 3.9283 -5.6378 2.0337 25 1 2.0614 -2.4364 -2.3509 26 1 1.0924 -3.8989 -2.6336 27 1 3.9414 -3.3632 -3.5682 28 1 2.4881 -3.5737 -4.5793 29 1 3.6971 -5.6906 -4.5807 30 1 2.2439 -5.9023 -3.5700 31 1 5.0923 -5.3678 -2.6339 32 1 4.1244 -6.8324 -2.3568 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380144983.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:37 Heat of formation + Delta-G solvation = -31.927424 kcal Electronic energy + Delta-G solvation = -16689.711860 eV Core-core repulsion = 14035.040561 eV Total energy + Delta-G solvation = -2654.671300 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.83689 -39.29033 -37.33911 -36.72707 -34.85479 -31.34937 -30.66971 -30.01395 -26.45743 -25.34294 -24.30394 -22.94989 -21.02979 -19.58536 -19.02146 -18.01941 -17.22619 -16.78437 -16.55255 -15.57990 -15.22829 -15.09215 -14.85131 -14.44672 -14.42974 -14.05362 -13.83282 -13.27160 -13.19666 -12.67068 -12.58062 -12.48257 -12.34165 -12.22643 -11.67811 -11.60011 -11.44465 -11.18456 -10.77954 -10.27434 -8.90339 -8.39724 -6.56906 -0.31597 0.70539 1.32386 1.35496 1.45338 1.67536 2.28439 2.64039 2.91459 3.18804 3.40431 3.56455 3.90468 4.05692 4.21138 4.30186 4.51428 4.54568 4.63311 4.79169 4.82589 4.95509 5.00438 5.07803 5.16840 5.24172 5.29572 5.45647 5.50873 5.57171 5.72486 5.94822 6.47283 6.73291 6.87530 7.13914 8.68107 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.024805 B = 0.009443 C = 0.007659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.520306 B = 2964.360033 C = 3655.180974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.970 3.030 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.552 4.552 8 H 0.048 0.952 9 C 0.233 3.767 10 N -0.472 5.472 11 C 0.448 3.552 12 O -0.591 6.591 13 C 0.009 3.991 14 N -0.394 5.394 15 C -0.043 4.043 16 C 0.149 3.851 17 C -0.095 4.095 18 C -0.108 4.108 19 C -0.114 4.114 20 C -0.037 4.037 21 H 0.274 0.726 22 H 0.016 0.984 23 H 0.059 0.941 24 H 0.204 0.796 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.389 -9.165 -11.112 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.794 3.206 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.590 4.590 8 H 0.067 0.933 9 C 0.114 3.886 10 N -0.182 5.182 11 C 0.247 3.753 12 O -0.473 6.473 13 C -0.176 4.176 14 N -0.107 5.107 15 C -0.166 4.166 16 C 0.035 3.965 17 C -0.133 4.133 18 C -0.145 4.145 19 C -0.152 4.152 20 C -0.076 4.076 21 H 0.083 0.917 22 H 0.035 0.965 23 H 0.077 0.923 24 H 0.220 0.780 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.465 -9.346 -10.622 15.555 hybrid contribution -0.656 1.776 0.992 2.138 sum 5.809 -7.569 -9.629 13.556 Atomic orbital electron populations 1.70007 1.07357 1.28911 1.48995 1.25754 0.95839 1.02788 0.93462 0.85372 0.78063 0.77913 0.79285 1.18021 1.20092 1.20327 1.21256 0.92810 0.90824 1.54074 0.93330 1.19546 0.87920 0.82691 0.98491 1.46538 1.36353 1.28554 1.06706 1.19139 0.85594 0.86882 0.83665 1.90875 1.61790 1.65181 1.29498 1.24661 0.98685 0.96000 0.98300 1.67488 1.19701 1.25341 0.98168 1.20722 1.01478 0.98867 0.95551 1.21950 0.93540 0.92791 0.88195 1.20914 1.00899 1.01520 0.89962 1.21574 0.99514 0.97347 0.96108 1.21631 1.00451 0.94935 0.98161 1.20152 0.99294 1.00842 0.87270 0.91692 0.96543 0.92285 0.77984 0.89933 0.88492 0.91303 0.88231 0.87550 0.91223 0.89722 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.26 13.29 21.45 0.28 -51.98 16 2 C 0.02 1.27 5.46 84.66 0.46 1.73 16 3 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.55 -31.01 8.75 25.60 0.22 -30.78 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.23 12.33 4.50 85.64 0.39 12.71 16 10 N -0.47 -21.85 2.60 -639.13 -1.66 -23.51 16 11 C 0.45 21.43 7.45 85.02 0.63 22.06 16 12 O -0.59 -33.24 16.77 -5.26 -0.09 -33.33 16 13 C 0.01 0.35 11.26 85.65 0.96 1.31 16 14 N -0.39 -13.59 10.23 -183.05 -1.87 -15.46 16 15 C -0.04 -1.38 6.56 41.54 0.27 -1.11 16 16 C 0.15 5.45 6.53 41.06 0.27 5.72 16 17 C -0.09 -2.88 4.39 29.73 0.13 -2.75 16 18 C -0.11 -2.20 6.00 30.62 0.18 -2.02 16 19 C -0.11 -1.90 5.99 30.61 0.18 -1.71 16 20 C -0.04 -0.81 5.90 29.76 0.18 -0.63 16 21 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 22 H 0.02 1.01 7.45 -2.38 -0.02 0.99 16 23 H 0.06 2.99 6.50 -2.39 -0.02 2.97 16 24 H 0.20 6.33 8.06 -2.91 -0.02 6.31 16 25 H 0.08 3.03 6.54 -2.38 -0.02 3.02 16 26 H 0.10 2.72 8.08 -2.38 -0.02 2.70 16 27 H 0.07 1.45 8.11 -2.38 -0.02 1.43 16 28 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 31 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -69.95 268.06 3.69 -66.25 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.12 Total: 8.24 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 3.88 Total: 4.54 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -3.25 Total: -90.95 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.09 Total: -33.33 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -69.95 3.69 -66.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380144983.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.326 kcal (2) G-P(sol) polarization free energy of solvation -69.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds