Wall clock time and date at job start Mon Mar 30 2020 03:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.81776 * 2 1 4 4 C 1.38394 * 119.99979 * 240.60792 * 3 2 1 5 5 N 1.32129 * 119.99956 * 179.78498 * 4 3 2 6 6 C 1.32158 * 119.99432 * 0.49539 * 5 4 3 7 7 C 1.38342 * 120.00323 * 359.73734 * 6 5 4 8 8 N 1.32124 * 120.00461 * 60.88722 * 3 2 1 9 9 C 1.54382 * 109.83068 * 120.88317 * 2 1 3 10 10 C 1.55305 * 102.43395 * 98.14767 * 9 2 1 11 11 C 1.55503 * 100.69731 * 34.13038 * 10 9 2 12 12 H 1.09000 * 110.37770 * 82.55185 * 11 10 9 13 13 C 1.50695 * 110.28603 * 204.65124 * 11 10 9 14 14 H 1.08008 * 119.99925 * 357.20498 * 13 11 10 15 15 C 1.37875 * 120.00227 * 177.19775 * 13 11 10 16 16 N 1.31510 * 119.99796 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00029 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46969 * 60.00348 * 17 15 13 19 19 H 1.48504 * 109.46901 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47056 * 300.00298 * 17 15 13 21 21 O 1.43232 * 109.90551 * 239.06503 * 2 1 3 22 22 H 1.09000 * 109.47072 * 299.11352 * 1 2 3 23 23 H 1.08997 * 109.47260 * 59.11774 * 1 2 3 24 24 H 1.09007 * 109.46884 * 179.11434 * 1 2 3 25 25 H 1.08000 * 119.99698 * 0.02763 * 4 3 2 26 26 H 1.08000 * 119.99503 * 179.71393 * 6 5 4 27 27 H 1.07999 * 119.99347 * 180.02562 * 7 6 5 28 28 H 1.09002 * 110.84829 * 216.44071 * 9 2 1 29 29 H 1.09001 * 110.84937 * 339.86171 * 9 2 1 30 30 H 1.08999 * 111.12419 * 152.14904 * 10 9 2 31 31 H 1.08995 * 111.13053 * 276.31315 * 10 9 2 32 32 H 0.97001 * 120.00179 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4177 0.0000 4 6 2.8289 1.8693 -1.0443 5 7 3.2734 3.1136 -1.0464 6 6 2.9735 3.9240 -0.0464 7 6 2.1898 3.4711 0.9998 8 7 1.7413 2.2281 0.9996 9 6 2.0538 -0.7454 1.2464 10 6 2.3694 -2.1579 0.6831 11 6 2.8437 -1.7966 -0.7530 12 1 3.8927 -1.5006 -0.7431 13 6 2.6402 -2.9669 -1.6804 14 1 2.2587 -3.9011 -1.2952 15 6 2.9409 -2.8451 -3.0204 16 7 3.4058 -1.7078 -3.4892 17 14 2.6894 -4.2961 -4.1697 18 1 1.2589 -4.6947 -4.1578 19 1 3.0848 -3.9100 -5.5481 20 1 3.5249 -5.4370 -3.7167 21 8 2.0177 -0.6923 -1.1552 22 1 -0.3633 0.5000 0.8978 23 1 -0.3633 0.5275 -0.8819 24 1 -0.3633 -1.0276 -0.0159 25 1 3.0773 1.2057 -1.8594 26 1 3.3406 4.9397 -0.0458 27 1 1.9445 4.1336 1.8167 28 1 2.9563 -0.2708 1.6315 29 1 1.2857 -0.7983 2.0180 30 1 3.1636 -2.6398 1.2534 31 1 1.4745 -2.7795 0.6570 32 1 3.6170 -1.6219 -4.4320 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389598669.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:25 Heat of formation + Delta-G solvation = -1.548162 kcal Electronic energy + Delta-G solvation = -16677.856210 eV Core-core repulsion = 14024.502254 eV Total energy + Delta-G solvation = -2653.353956 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.79772 -38.39742 -34.10087 -32.95338 -31.61801 -31.07598 -29.55739 -26.58203 -24.61240 -24.04019 -22.94215 -20.43801 -19.73224 -17.03541 -16.71317 -16.54227 -15.82070 -14.98442 -14.69357 -14.39900 -14.05705 -13.44568 -12.61187 -12.49114 -12.21820 -12.05669 -11.81935 -11.62579 -11.21848 -10.92316 -10.82916 -10.66266 -10.50589 -10.39572 -10.22395 -9.92205 -9.16163 -8.83567 -8.72095 -8.55802 -8.07065 -6.05420 -4.17838 1.16083 1.50075 3.30938 3.36217 3.38100 4.06153 4.24160 4.39993 4.61439 4.84504 4.99397 5.18235 5.36756 5.40546 5.48803 5.60923 5.76768 5.92845 6.07139 6.13674 6.15490 6.35930 6.50977 6.55265 6.60194 6.71029 6.79401 6.90221 7.48143 7.67531 7.85296 8.15596 8.19745 8.51596 8.95179 9.53271 11.02392 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.034308 B = 0.007991 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.936267 B = 3503.091430 C = 3983.712879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.149 3.851 3 C 0.085 3.915 4 C 0.079 3.921 5 N -0.443 5.443 6 C 0.028 3.972 7 C 0.036 3.964 8 N -0.438 5.438 9 C -0.131 4.131 10 C -0.148 4.148 11 C 0.210 3.790 12 H 0.029 0.971 13 C -0.534 4.534 14 H 0.064 0.936 15 C 0.079 3.921 16 N -0.863 5.863 17 Si 0.892 3.108 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.276 1.276 21 O -0.342 6.342 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.191 0.809 26 H 0.161 0.839 27 H 0.162 0.838 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 7.009 7.954 10.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.106 3.894 3 C -0.055 4.055 4 C -0.080 4.080 5 N -0.158 5.158 6 C -0.131 4.131 7 C -0.124 4.124 8 N -0.154 5.154 9 C -0.170 4.170 10 C -0.185 4.185 11 C 0.155 3.845 12 H 0.047 0.953 13 C -0.571 4.571 14 H 0.082 0.918 15 C -0.127 4.127 16 N -0.499 5.499 17 Si 0.720 3.280 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 O -0.260 6.260 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.208 0.792 26 H 0.178 0.822 27 H 0.179 0.821 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.548 7.169 7.561 10.726 hybrid contribution -0.043 -0.530 -0.423 0.679 sum -2.591 6.639 7.138 10.087 Atomic orbital electron populations 1.21929 0.93641 1.02446 1.01271 1.20508 0.93928 0.85601 0.89329 1.22841 0.94402 0.97703 0.90588 1.24072 0.92515 0.92036 0.99389 1.68575 1.18658 1.04143 1.24421 1.23684 0.97136 1.00668 0.91621 1.23610 0.96267 0.93349 0.99176 1.68136 1.19081 1.03425 1.24772 1.22996 1.00612 0.96698 0.96654 1.23441 1.01208 0.94907 0.98984 1.20696 0.90311 0.84642 0.88842 0.95312 1.21042 1.46246 0.96355 0.93502 0.91821 1.25051 0.93698 0.95608 0.98316 1.69978 1.41315 1.24193 1.14389 0.86675 0.78774 0.82746 0.79854 1.20083 1.21178 1.20140 1.88867 1.67552 1.44205 1.25409 0.92162 0.92823 0.91479 0.79221 0.82182 0.82076 0.92119 0.90989 0.91746 0.91241 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.64 37.16 0.32 -2.10 16 2 C 0.15 2.98 1.17 -91.05 -0.11 2.87 16 3 C 0.09 1.64 5.30 -82.41 -0.44 1.20 16 4 C 0.08 1.60 10.57 -17.37 -0.18 1.41 16 5 N -0.44 -8.08 10.50 -13.05 -0.14 -8.22 16 6 C 0.03 0.40 11.22 -17.37 -0.20 0.21 16 7 C 0.04 0.50 11.22 -17.38 -0.20 0.30 16 8 N -0.44 -7.46 10.17 -9.29 -0.09 -7.56 16 9 C -0.13 -2.40 5.97 -24.78 -0.15 -2.55 16 10 C -0.15 -2.97 6.57 -24.18 -0.16 -3.13 16 11 C 0.21 5.20 3.28 -26.56 -0.09 5.12 16 12 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 13 C -0.53 -14.46 8.81 -34.44 -0.30 -14.76 16 14 H 0.06 1.67 7.77 -52.48 -0.41 1.26 16 15 C 0.08 2.18 5.42 -17.82 -0.10 2.09 16 16 N -0.86 -24.65 12.93 55.43 0.72 -23.93 16 17 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 O -0.34 -8.35 8.39 -35.23 -0.30 -8.64 16 22 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 24 H 0.07 1.19 8.14 -51.92 -0.42 0.76 16 25 H 0.19 4.30 7.03 -52.49 -0.37 3.93 16 26 H 0.16 1.63 8.06 -52.49 -0.42 1.20 16 27 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.06 1.10 7.84 -51.93 -0.41 0.70 16 29 H 0.07 1.16 7.82 -51.93 -0.41 0.76 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.37 8.06 -51.93 -0.42 0.95 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 274.64 15.07 4.14 4.14 Total: -1.00 -29.75 274.64 -6.38 -36.14 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.10 Total: 1.51 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -1.59 Total: -9.34 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.49 Total: -39.71 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.30 Total: -8.64 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.75 -6.38 -36.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389598669.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.590 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds