Wall clock time and date at job start Mon Mar 30 2020 03:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.81776 * 2 1 4 4 C 1.38394 * 119.99979 * 240.60792 * 3 2 1 5 5 N 1.32129 * 119.99956 * 179.78498 * 4 3 2 6 6 C 1.32158 * 119.99432 * 0.49539 * 5 4 3 7 7 C 1.38342 * 120.00323 * 359.73734 * 6 5 4 8 8 N 1.32124 * 120.00461 * 60.88722 * 3 2 1 9 9 C 1.54382 * 109.83068 * 120.88317 * 2 1 3 10 10 C 1.55305 * 102.43395 * 98.14767 * 9 2 1 11 11 C 1.55503 * 100.69731 * 34.13038 * 10 9 2 12 12 H 1.09000 * 110.37770 * 82.55185 * 11 10 9 13 13 C 1.50695 * 110.28603 * 204.65124 * 11 10 9 14 14 H 1.08008 * 119.99925 * 357.20498 * 13 11 10 15 15 C 1.37875 * 120.00227 * 177.19775 * 13 11 10 16 16 N 1.31510 * 119.99796 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00029 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46969 * 60.00348 * 17 15 13 19 19 H 1.48504 * 109.46901 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47056 * 300.00298 * 17 15 13 21 21 O 1.43232 * 109.90551 * 239.06503 * 2 1 3 22 22 H 1.09000 * 109.47072 * 299.11352 * 1 2 3 23 23 H 1.08997 * 109.47260 * 59.11774 * 1 2 3 24 24 H 1.09007 * 109.46884 * 179.11434 * 1 2 3 25 25 H 1.08000 * 119.99698 * 0.02763 * 4 3 2 26 26 H 1.08000 * 119.99503 * 179.71393 * 6 5 4 27 27 H 1.07999 * 119.99347 * 180.02562 * 7 6 5 28 28 H 1.09002 * 110.84829 * 216.44071 * 9 2 1 29 29 H 1.09001 * 110.84937 * 339.86171 * 9 2 1 30 30 H 1.08999 * 111.12419 * 152.14904 * 10 9 2 31 31 H 1.08995 * 111.13053 * 276.31315 * 10 9 2 32 32 H 0.97001 * 120.00179 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4177 0.0000 4 6 2.8289 1.8693 -1.0443 5 7 3.2734 3.1136 -1.0464 6 6 2.9735 3.9240 -0.0464 7 6 2.1898 3.4711 0.9998 8 7 1.7413 2.2281 0.9996 9 6 2.0538 -0.7454 1.2464 10 6 2.3694 -2.1579 0.6831 11 6 2.8437 -1.7966 -0.7530 12 1 3.8927 -1.5006 -0.7431 13 6 2.6402 -2.9669 -1.6804 14 1 2.2587 -3.9011 -1.2952 15 6 2.9409 -2.8451 -3.0204 16 7 3.4058 -1.7078 -3.4892 17 14 2.6894 -4.2961 -4.1697 18 1 1.2589 -4.6947 -4.1578 19 1 3.0848 -3.9100 -5.5481 20 1 3.5249 -5.4370 -3.7167 21 8 2.0177 -0.6923 -1.1552 22 1 -0.3633 0.5000 0.8978 23 1 -0.3633 0.5275 -0.8819 24 1 -0.3633 -1.0276 -0.0159 25 1 3.0773 1.2057 -1.8594 26 1 3.3406 4.9397 -0.0458 27 1 1.9445 4.1336 1.8167 28 1 2.9563 -0.2708 1.6315 29 1 1.2857 -0.7983 2.0180 30 1 3.1636 -2.6398 1.2534 31 1 1.4745 -2.7795 0.6570 32 1 3.6170 -1.6219 -4.4320 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389598669.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:24 Heat of formation + Delta-G solvation = -21.731211 kcal Electronic energy + Delta-G solvation = -16678.731413 eV Core-core repulsion = 14024.502254 eV Total energy + Delta-G solvation = -2654.229159 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.14458 -40.02961 -35.56116 -34.77081 -33.24297 -32.72099 -31.03933 -28.40820 -26.07343 -25.40486 -24.57984 -22.20822 -21.24252 -18.61245 -18.35838 -18.07453 -17.19473 -16.62908 -16.53756 -15.85675 -15.43489 -15.10793 -14.33947 -13.97682 -13.75413 -13.69262 -13.51736 -13.11178 -12.77080 -12.56223 -12.40749 -12.22806 -12.18670 -12.13887 -11.88548 -11.52317 -10.99729 -10.70917 -10.26410 -10.04525 -9.78864 -8.13115 -6.33162 -0.12435 0.18524 1.42873 1.45028 1.52575 2.42475 2.74710 2.84340 3.16381 3.34628 3.55631 3.74666 3.81650 3.98815 4.04466 4.34097 4.38813 4.46903 4.61893 4.62823 4.76115 4.81651 4.91993 5.01464 5.08993 5.16269 5.30347 5.52926 5.58335 5.76043 6.18376 6.34940 6.58135 6.85617 7.02095 7.42564 8.94383 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.034308 B = 0.007991 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.936267 B = 3503.091430 C = 3983.712879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.136 3.864 3 C 0.072 3.928 4 C 0.047 3.953 5 N -0.466 5.466 6 C 0.039 3.961 7 C 0.055 3.945 8 N -0.443 5.443 9 C -0.118 4.118 10 C -0.138 4.138 11 C 0.203 3.797 12 H -0.010 1.010 13 C -0.553 4.553 14 H 0.068 0.932 15 C 0.025 3.975 16 N -0.899 5.899 17 Si 0.959 3.041 18 H -0.270 1.270 19 H -0.286 1.286 20 H -0.265 1.265 21 O -0.370 6.370 22 H 0.085 0.915 23 H 0.041 0.959 24 H 0.065 0.935 25 H 0.147 0.853 26 H 0.210 0.790 27 H 0.217 0.783 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.584 8.124 10.047 13.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.094 3.906 3 C -0.066 4.066 4 C -0.110 4.110 5 N -0.181 5.181 6 C -0.122 4.122 7 C -0.107 4.107 8 N -0.159 5.159 9 C -0.156 4.156 10 C -0.176 4.176 11 C 0.148 3.852 12 H 0.008 0.992 13 C -0.591 4.591 14 H 0.086 0.914 15 C -0.177 4.177 16 N -0.536 5.536 17 Si 0.784 3.216 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.190 1.190 21 O -0.289 6.289 22 H 0.104 0.896 23 H 0.060 0.940 24 H 0.084 0.916 25 H 0.164 0.836 26 H 0.226 0.774 27 H 0.234 0.766 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.556 8.225 9.645 13.165 hybrid contribution 0.293 -0.649 -0.971 1.204 sum -3.263 7.576 8.674 11.970 Atomic orbital electron populations 1.21875 0.92136 1.02543 1.01921 1.20789 0.95060 0.86194 0.88557 1.22507 0.95148 0.97744 0.91249 1.23450 0.95177 0.92910 0.99476 1.68493 1.19327 1.03742 1.26552 1.24544 0.95751 1.01829 0.90098 1.24540 0.93790 0.92466 0.99880 1.68184 1.19485 1.04615 1.23642 1.22934 1.01363 0.94797 0.96476 1.23321 1.01690 0.96380 0.96159 1.20528 0.88788 0.84425 0.91438 0.99194 1.21472 1.45887 0.97425 0.94289 0.91368 1.25913 0.93490 0.98215 1.00093 1.70144 1.42707 1.26289 1.14441 0.85620 0.78916 0.79567 0.77541 1.19470 1.21142 1.18970 1.88784 1.67449 1.44604 1.28068 0.89596 0.94019 0.91563 0.83592 0.77356 0.76630 0.92284 0.87944 0.90275 0.90676 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 8.64 71.98 0.62 -3.84 16 2 C 0.14 5.48 1.17 -11.07 -0.01 5.47 16 3 C 0.07 2.76 5.30 42.55 0.23 2.98 16 4 C 0.05 1.99 10.57 84.69 0.89 2.88 16 5 N -0.47 -16.91 10.50 -195.21 -2.05 -18.96 16 6 C 0.04 0.98 11.22 84.67 0.95 1.93 16 7 C 0.05 1.28 11.22 84.67 0.95 2.23 16 8 N -0.44 -13.94 10.17 -183.30 -1.86 -15.80 16 9 C -0.12 -4.17 5.97 31.86 0.19 -3.98 16 10 C -0.14 -5.51 6.57 32.25 0.21 -5.30 16 11 C 0.20 10.54 3.28 30.71 0.10 10.64 16 12 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 13 C -0.55 -30.89 8.81 25.60 0.23 -30.67 16 14 H 0.07 3.63 7.77 -2.91 -0.02 3.60 16 15 C 0.03 1.44 5.42 84.65 0.46 1.89 16 16 N -0.90 -54.06 12.93 21.45 0.28 -53.78 16 17 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 21 O -0.37 -19.02 8.39 -148.98 -1.25 -20.27 16 22 H 0.09 2.53 8.10 -2.39 -0.02 2.51 16 23 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 25 H 0.15 7.36 7.03 -2.91 -0.02 7.34 16 26 H 0.21 3.11 8.06 -2.91 -0.02 3.08 16 27 H 0.22 2.66 8.06 -2.91 -0.02 2.64 16 28 H 0.06 2.09 7.84 -2.39 -0.02 2.07 16 29 H 0.10 2.99 7.82 -2.39 -0.02 2.98 16 30 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.07 2.90 8.06 -2.39 -0.02 2.88 16 32 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -68.72 274.64 3.06 -65.66 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.11 Total: 12.97 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 4.82 Total: -15.77 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -3.64 Total: -88.54 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -1.25 Total: -20.27 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -68.72 3.06 -65.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389598669.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.929 kcal (2) G-P(sol) polarization free energy of solvation -68.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds