Wall clock time and date at job start Mon Mar 30 2020 03:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34746 * 120.04090 * 90.00603 * 11 10 9 13 13 N 1.30636 * 121.48964 * 180.02562 * 12 11 10 14 14 C 1.33522 * 121.51270 * 359.96968 * 13 12 11 15 15 C 1.50694 * 120.05103 * 179.97438 * 14 13 12 16 16 C 1.53007 * 117.49845 * 8.62072 * 15 14 13 17 17 C 1.53005 * 117.49640 * 299.99906 * 15 14 13 18 18 C 1.36210 * 119.90208 * 0.02562 * 14 13 12 19 19 C 1.35022 * 120.04092 * 269.73057 * 11 10 9 20 20 O 1.21981 * 120.70928 * 359.97438 * 19 11 10 21 21 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 25 25 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 26 26 H 1.07996 * 119.25292 * 359.97438 * 12 11 10 27 27 H 1.09001 * 115.55011 * 154.33226 * 15 14 13 28 28 H 1.08999 * 117.49460 * 0.02562 * 16 15 14 29 29 H 1.08993 * 117.49753 * 145.02345 * 16 15 14 30 30 H 1.08995 * 117.49788 * 214.98299 * 17 15 14 31 31 H 1.08997 * 117.49902 * 359.97438 * 17 15 14 32 32 H 1.07997 * 120.69830 * 180.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 7 5.4866 -2.6364 -0.0163 12 6 6.1656 -2.6390 1.1476 13 7 7.4716 -2.6385 1.1756 14 6 8.1938 -2.6361 0.0526 15 6 9.6991 -2.6350 0.1234 16 6 10.3419 -2.8402 1.4967 17 6 10.3720 -1.4603 0.8364 18 6 7.5680 -2.6335 -1.1572 19 6 6.1581 -2.6395 -1.1877 20 8 5.5580 -2.6427 -2.2497 21 1 -0.4850 0.8400 -0.0004 22 1 3.8713 -0.6783 -0.8962 23 1 3.8786 -0.6819 0.8837 24 1 3.6619 -3.1521 0.8797 25 1 3.6545 -3.1485 -0.9003 26 1 5.6176 -2.6406 2.0782 27 1 10.2107 -3.0592 -0.7406 28 1 9.6759 -2.9764 2.3487 29 1 11.2765 -3.3996 1.5363 30 1 11.3263 -1.1119 0.4416 31 1 9.7258 -0.6881 1.2538 32 1 8.1394 -2.6320 -2.0736 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395591375.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:42 Heat of formation + Delta-G solvation = 24.151601 kcal Electronic energy + Delta-G solvation = -15869.624046 eV Core-core repulsion = 13217.384516 eV Total energy + Delta-G solvation = -2652.239531 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.54906 -38.15641 -36.75615 -35.09368 -32.95877 -30.88608 -30.46788 -26.23453 -24.40574 -24.00891 -22.47337 -21.21303 -20.69562 -18.00182 -17.49014 -16.88261 -16.00028 -15.71936 -15.36642 -14.51738 -14.27531 -14.06083 -13.51528 -13.25744 -12.84641 -12.80662 -12.12861 -12.06391 -11.62987 -11.36054 -11.16523 -10.73425 -10.55685 -10.33195 -10.07589 -9.89629 -9.69786 -9.49137 -9.39937 -8.67146 -8.20580 -6.17870 -4.19031 0.78456 2.03147 2.84445 3.24186 3.31397 3.33511 3.53507 3.95822 4.05414 4.33927 4.38778 4.70715 4.84517 4.93166 4.95372 5.15825 5.31375 5.50102 5.57740 5.66089 5.81771 5.90609 5.93584 5.97251 6.08350 6.26055 6.51917 6.81326 6.98605 7.14156 7.56473 7.94250 8.17024 8.33055 8.83150 9.42538 10.94708 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.035840 B = 0.005976 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.051869 B = 4683.899515 C = 4931.682804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.526 4.526 8 H 0.077 0.923 9 C -0.021 4.021 10 C 0.096 3.904 11 N -0.514 5.514 12 C 0.385 3.615 13 N -0.555 5.555 14 C 0.205 3.795 15 C -0.122 4.122 16 C -0.156 4.156 17 C -0.159 4.159 18 C -0.294 4.294 19 C 0.514 3.486 20 O -0.534 6.534 21 H 0.266 0.734 22 H 0.021 0.979 23 H 0.021 0.979 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.204 0.796 27 H 0.122 0.878 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.725 -4.950 4.561 19.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.095 0.905 9 C -0.059 4.059 10 C -0.024 4.024 11 N -0.229 5.229 12 C 0.100 3.900 13 N -0.279 5.279 14 C 0.085 3.915 15 C -0.141 4.141 16 C -0.193 4.193 17 C -0.196 4.196 18 C -0.320 4.320 19 C 0.313 3.687 20 O -0.412 6.412 21 H 0.076 0.924 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.110 0.890 25 H 0.117 0.883 26 H 0.221 0.779 27 H 0.140 0.860 28 H 0.129 0.871 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 18.645 -4.841 4.459 19.772 hybrid contribution -0.104 0.976 -0.844 1.294 sum 18.540 -3.865 3.615 19.281 Atomic orbital electron populations 1.69888 1.06223 1.27215 1.49994 1.24933 0.94724 0.99088 0.94080 0.86800 0.80175 0.83648 0.78802 1.20077 1.21045 1.19227 1.20824 0.88198 0.94985 1.52388 0.90458 1.19892 0.98176 0.90552 0.97310 1.22382 0.72952 1.02414 1.04657 1.47199 1.12184 1.55734 1.07749 1.24965 0.88775 0.85375 0.90848 1.68068 1.04218 1.25450 1.30158 1.20166 0.94449 0.88655 0.88249 1.20969 0.88820 1.06021 0.98258 1.22955 1.01902 0.98848 0.95566 1.22948 1.01654 0.91946 1.03093 1.22570 0.93369 1.16054 0.99964 1.17243 0.88772 0.79129 0.83513 1.90957 1.70636 1.51331 1.28312 0.92410 0.96057 0.96089 0.88968 0.88350 0.77945 0.86021 0.87124 0.88695 0.88329 0.88412 0.83425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.57 27.46 -169.99 -4.67 16.91 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.30 6.55 56.52 0.37 -5.93 16 7 C -0.53 -14.40 9.66 -34.44 -0.33 -14.73 16 8 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.02 -0.49 4.37 -27.88 -0.12 -0.61 16 10 C 0.10 1.80 5.32 -4.04 -0.02 1.78 16 11 N -0.51 -8.71 2.57 -121.11 -0.31 -9.02 16 12 C 0.38 5.20 11.48 -90.53 -1.04 4.16 16 13 N -0.55 -7.55 9.41 -10.70 -0.10 -7.65 16 14 C 0.21 2.81 6.43 -82.59 -0.53 2.28 16 15 C -0.12 -1.27 6.03 -91.77 -0.55 -1.83 16 16 C -0.16 -1.40 10.03 -26.72 -0.27 -1.66 16 17 C -0.16 -1.47 10.23 -26.72 -0.27 -1.74 16 18 C -0.29 -4.61 9.75 -39.26 -0.38 -4.99 16 19 C 0.51 9.77 7.45 -15.09 -0.11 9.66 16 20 O -0.53 -12.27 16.78 4.94 0.08 -12.19 16 21 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.02 0.53 7.56 -51.93 -0.39 0.14 16 23 H 0.02 0.47 7.21 -51.93 -0.37 0.09 16 24 H 0.09 1.43 8.02 -51.93 -0.42 1.02 16 25 H 0.10 2.01 7.45 -51.93 -0.39 1.62 16 26 H 0.20 1.95 8.03 -52.49 -0.42 1.53 16 27 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.11 1.10 7.58 -51.93 -0.39 0.71 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.15 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 279.92 15.07 4.22 4.22 Total: -1.00 -33.02 279.92 -7.82 -40.85 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -4.08 Total: -1.28 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -3.73 Total: -5.67 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.36 Total: -42.84 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.08 Total: -12.19 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.02 -7.82 -40.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395591375.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.000 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds