Wall clock time and date at job start Mon Mar 30 2020 03:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34746 * 120.04090 * 90.00603 * 11 10 9 13 13 N 1.30636 * 121.48964 * 180.02562 * 12 11 10 14 14 C 1.33522 * 121.51270 * 359.96968 * 13 12 11 15 15 C 1.50694 * 120.05103 * 179.97438 * 14 13 12 16 16 C 1.53007 * 117.49845 * 8.62072 * 15 14 13 17 17 C 1.53005 * 117.49640 * 299.99906 * 15 14 13 18 18 C 1.36210 * 119.90208 * 0.02562 * 14 13 12 19 19 C 1.35022 * 120.04092 * 269.73057 * 11 10 9 20 20 O 1.21981 * 120.70928 * 359.97438 * 19 11 10 21 21 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 25 25 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 26 26 H 1.07996 * 119.25292 * 359.97438 * 12 11 10 27 27 H 1.09001 * 115.55011 * 154.33226 * 15 14 13 28 28 H 1.08999 * 117.49460 * 0.02562 * 16 15 14 29 29 H 1.08993 * 117.49753 * 145.02345 * 16 15 14 30 30 H 1.08995 * 117.49788 * 214.98299 * 17 15 14 31 31 H 1.08997 * 117.49902 * 359.97438 * 17 15 14 32 32 H 1.07997 * 120.69830 * 180.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 7 5.4866 -2.6364 -0.0163 12 6 6.1656 -2.6390 1.1476 13 7 7.4716 -2.6385 1.1756 14 6 8.1938 -2.6361 0.0526 15 6 9.6991 -2.6350 0.1234 16 6 10.3419 -2.8402 1.4967 17 6 10.3720 -1.4603 0.8364 18 6 7.5680 -2.6335 -1.1572 19 6 6.1581 -2.6395 -1.1877 20 8 5.5580 -2.6427 -2.2497 21 1 -0.4850 0.8400 -0.0004 22 1 3.8713 -0.6783 -0.8962 23 1 3.8786 -0.6819 0.8837 24 1 3.6619 -3.1521 0.8797 25 1 3.6545 -3.1485 -0.9003 26 1 5.6176 -2.6406 2.0782 27 1 10.2107 -3.0592 -0.7406 28 1 9.6759 -2.9764 2.3487 29 1 11.2765 -3.3996 1.5363 30 1 11.3263 -1.1119 0.4416 31 1 9.7258 -0.6881 1.2538 32 1 8.1394 -2.6320 -2.0736 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395591375.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:42 Heat of formation + Delta-G solvation = 4.130883 kcal Electronic energy + Delta-G solvation = -15870.492210 eV Core-core repulsion = 13217.384516 eV Total energy + Delta-G solvation = -2653.107694 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.83055 -39.26458 -38.01044 -36.44346 -34.88418 -32.28734 -32.08825 -27.82260 -25.62972 -25.40624 -23.15616 -22.87846 -21.86592 -19.35223 -19.23942 -18.07015 -17.47619 -17.14672 -16.39166 -16.24747 -15.57452 -15.21009 -15.10490 -14.82428 -14.48404 -14.11479 -13.79333 -13.08811 -13.04085 -12.91501 -12.30236 -12.13083 -11.94067 -11.82737 -11.63580 -11.45718 -11.23408 -10.90536 -10.85094 -10.70981 -9.51190 -8.36494 -6.41935 -0.36414 0.76735 1.29501 1.32297 1.41067 1.51344 2.28303 2.45554 2.95206 2.98850 3.14139 3.38808 3.72714 3.84534 3.96822 4.17023 4.23512 4.27960 4.36302 4.59789 4.65899 4.70405 4.86050 4.98389 5.11031 5.16145 5.20208 5.37733 5.41817 5.54218 5.65370 6.14761 6.64465 6.74340 6.81291 7.23065 8.79344 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.035840 B = 0.005976 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.051869 B = 4683.899515 C = 4931.682804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.017 3.983 3 Si 0.940 3.060 4 H -0.281 1.281 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.530 4.530 8 H 0.049 0.951 9 C -0.015 4.015 10 C 0.109 3.891 11 N -0.517 5.517 12 C 0.388 3.612 13 N -0.549 5.549 14 C 0.221 3.779 15 C -0.141 4.141 16 C -0.143 4.143 17 C -0.152 4.152 18 C -0.317 4.317 19 C 0.498 3.502 20 O -0.593 6.593 21 H 0.269 0.731 22 H -0.003 1.003 23 H 0.040 0.960 24 H 0.130 0.870 25 H 0.072 0.928 26 H 0.248 0.752 27 H 0.140 0.860 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.628 -4.607 6.503 23.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.182 4.182 3 Si 0.764 3.236 4 H -0.207 1.207 5 H -0.200 1.200 6 H -0.170 1.170 7 C -0.569 4.569 8 H 0.067 0.933 9 C -0.053 4.053 10 C -0.012 4.012 11 N -0.230 5.230 12 C 0.106 3.894 13 N -0.272 5.272 14 C 0.100 3.900 15 C -0.159 4.159 16 C -0.180 4.180 17 C -0.189 4.189 18 C -0.341 4.341 19 C 0.300 3.700 20 O -0.476 6.476 21 H 0.078 0.922 22 H 0.015 0.985 23 H 0.058 0.942 24 H 0.148 0.852 25 H 0.091 0.909 26 H 0.264 0.736 27 H 0.158 0.842 28 H 0.120 0.880 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.103 0.897 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 21.588 -4.511 6.456 22.979 hybrid contribution -0.956 0.796 -1.377 1.856 sum 20.631 -3.716 5.079 21.570 Atomic orbital electron populations 1.70017 1.07963 1.28319 1.51755 1.25805 0.95495 1.02912 0.93962 0.85817 0.79778 0.79349 0.78629 1.20735 1.20016 1.17028 1.21148 0.90591 0.93915 1.51228 0.93278 1.19745 0.95298 0.93436 0.96791 1.22058 0.74215 0.99640 1.05304 1.47092 1.11363 1.56120 1.08455 1.25929 0.88995 0.83596 0.90914 1.68227 1.04185 1.24953 1.29858 1.20654 0.96289 0.85696 0.87380 1.21159 0.86680 1.07925 1.00164 1.23042 1.02364 0.98746 0.93883 1.23033 1.02063 0.91523 1.02327 1.22550 0.91739 1.18431 1.01428 1.17802 0.90024 0.78795 0.83330 1.90914 1.71776 1.54573 1.30318 0.92196 0.98488 0.94162 0.85226 0.90920 0.73646 0.84233 0.88030 0.86253 0.86015 0.89712 0.82601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.67 13.96 21.45 0.30 -57.37 16 2 C 0.02 0.96 5.47 84.65 0.46 1.42 16 3 Si 0.94 44.18 27.46 68.60 1.88 46.07 16 4 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.25 -10.65 6.55 99.48 0.65 -10.00 16 7 C -0.53 -29.40 9.66 25.60 0.25 -29.15 16 8 H 0.05 2.92 7.99 -2.91 -0.02 2.90 16 9 C -0.01 -0.66 4.37 29.85 0.13 -0.53 16 10 C 0.11 4.00 5.32 86.38 0.46 4.46 16 11 N -0.52 -16.88 2.57 -655.03 -1.68 -18.57 16 12 C 0.39 9.31 11.48 180.32 2.07 11.38 16 13 N -0.55 -13.30 9.41 -187.76 -1.77 -15.07 16 14 C 0.22 5.55 6.43 41.83 0.27 5.82 16 15 C -0.14 -2.50 6.03 -11.54 -0.07 -2.57 16 16 C -0.14 -2.02 10.03 30.60 0.31 -1.72 16 17 C -0.15 -2.27 10.23 30.60 0.31 -1.96 16 18 C -0.32 -9.71 9.75 22.48 0.22 -9.49 16 19 C 0.50 19.08 7.45 84.89 0.63 19.71 16 20 O -0.59 -28.38 16.78 -5.25 -0.09 -28.47 16 21 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 22 H 0.00 -0.17 7.56 -2.39 -0.02 -0.18 16 23 H 0.04 1.68 7.21 -2.38 -0.02 1.66 16 24 H 0.13 3.74 8.02 -2.39 -0.02 3.72 16 25 H 0.07 3.06 7.45 -2.38 -0.02 3.04 16 26 H 0.25 3.55 8.03 -2.91 -0.02 3.52 16 27 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.10 1.66 7.58 -2.39 -0.02 1.64 16 29 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.16 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -74.09 279.92 4.74 -69.35 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 1.06 Total: 6.68 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 5.04 Total: -2.62 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -3.15 Total: -91.00 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.09 Total: -28.47 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.07 kcal Total: -74.09 4.74 -69.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395591375.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.476 kcal (2) G-P(sol) polarization free energy of solvation -74.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds