Wall clock time and date at job start Mon Mar 30 2020 03:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.87044 * 2 1 4 4 C 1.38623 * 120.44609 * 63.70861 * 3 2 1 5 5 C 1.38580 * 118.40139 * 179.76179 * 4 3 2 6 6 N 1.32350 * 119.09914 * 0.51992 * 5 4 3 7 7 C 1.31780 * 120.82220 * 359.74674 * 6 5 4 8 8 N 1.31808 * 121.75415 * 359.97438 * 7 6 5 9 9 C 1.54098 * 109.88183 * 238.99765 * 2 1 3 10 10 C 1.54812 * 104.18733 * 242.60288 * 9 2 1 11 11 C 1.54996 * 102.09305 * 20.87918 * 10 9 2 12 12 H 1.08997 * 110.61731 * 81.63366 * 11 10 9 13 13 C 1.50701 * 110.61829 * 204.47937 * 11 10 9 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 11 10 15 15 C 1.37871 * 119.99694 * 180.27677 * 13 11 10 16 16 N 1.31523 * 119.99908 * 179.72112 * 15 13 11 17 17 Si 1.86800 * 120.00405 * 359.71709 * 15 13 11 18 18 H 1.48500 * 109.47210 * 90.00069 * 17 15 13 19 19 H 1.48504 * 109.47424 * 210.00300 * 17 15 13 20 20 H 1.48502 * 109.46888 * 330.00390 * 17 15 13 21 21 O 1.43740 * 109.88112 * 121.16206 * 2 1 3 22 22 H 1.09006 * 109.46674 * 181.00278 * 1 2 3 23 23 H 1.08997 * 109.47489 * 301.00617 * 1 2 3 24 24 H 1.09006 * 109.47460 * 61.00726 * 1 2 3 25 25 H 1.08005 * 120.80242 * 0.03418 * 4 3 2 26 26 H 1.07990 * 120.45324 * 180.26671 * 5 4 3 27 27 H 1.08007 * 119.12111 * 179.97438 * 7 6 5 28 28 H 1.09001 * 110.49625 * 123.92700 * 9 2 1 29 29 H 1.09002 * 110.60365 * 1.33528 * 9 2 1 30 30 H 1.09003 * 110.90690 * 262.67771 * 10 9 2 31 31 H 1.08999 * 110.90862 * 139.07594 * 10 9 2 32 32 H 0.96995 * 120.00181 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0422 1.4173 0.0000 4 6 1.7831 2.2579 1.0714 5 6 2.2787 3.5513 1.0294 6 7 2.9694 3.9418 -0.0299 7 6 3.1915 3.1165 -1.0330 8 7 2.7404 1.8780 -1.0251 9 6 2.0540 -0.7464 -1.2421 10 6 2.8325 -1.9514 -0.6603 11 6 2.2281 -2.0724 0.7619 12 1 1.2828 -2.6142 0.7323 13 6 3.1980 -2.7508 1.6947 14 1 4.1615 -3.0747 1.3297 15 6 2.8528 -2.9636 3.0124 16 7 3.6970 -3.5606 3.8252 17 14 1.1861 -2.4039 3.6435 18 1 0.1971 -3.4975 3.4669 19 1 1.2921 -2.0603 5.0844 20 1 0.7439 -1.2088 2.8809 21 8 2.0188 -0.6995 1.1567 22 1 -0.3633 -1.0276 0.0180 23 1 -0.3634 0.5294 0.8808 24 1 -0.3634 0.4981 -0.8989 25 1 1.2126 1.9117 1.9206 26 1 2.1003 4.2327 1.8479 27 1 3.7582 3.4642 -1.8842 28 1 2.7197 -0.1053 -1.8200 29 1 1.2252 -1.0905 -1.8609 30 1 3.9004 -1.7381 -0.6123 31 1 2.6433 -2.8540 -1.2413 32 1 3.4544 -3.7099 4.7524 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396039536.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:08 Heat of formation + Delta-G solvation = -13.145067 kcal Electronic energy + Delta-G solvation = -16721.763440 eV Core-core repulsion = 14067.906605 eV Total energy + Delta-G solvation = -2653.856835 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.14525 -40.24351 -35.49587 -34.56872 -33.53289 -32.79450 -31.50580 -28.90342 -26.20980 -25.36609 -24.37158 -21.95756 -21.46841 -19.13134 -18.42936 -18.07853 -16.95746 -16.47657 -16.36815 -16.11206 -15.37857 -15.07564 -14.79739 -14.66625 -14.46839 -13.74687 -13.53304 -13.07061 -12.77754 -12.58374 -12.13019 -12.05605 -11.81807 -11.78472 -11.68163 -11.35129 -11.31428 -10.79261 -10.58310 -10.34044 -10.09127 -8.37003 -6.51296 -0.05670 0.06522 1.37356 1.40199 1.65622 2.40366 2.60550 2.85698 3.05236 3.28949 3.45733 3.65860 3.90446 4.00400 4.10301 4.19227 4.32497 4.37935 4.55292 4.62047 4.69012 4.71599 4.94644 5.02851 5.07276 5.15912 5.33489 5.43642 5.46183 5.52772 6.01493 6.18859 6.36394 6.64785 7.09594 7.24597 8.77445 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.029528 B = 0.008890 C = 0.008253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.018129 B = 3148.943344 C = 3391.837519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.125 3.875 3 C 0.176 3.824 4 C -0.215 4.215 5 C 0.149 3.851 6 N -0.537 5.537 7 C 0.284 3.716 8 N -0.527 5.527 9 C -0.135 4.135 10 C -0.133 4.133 11 C 0.174 3.826 12 H 0.040 0.960 13 C -0.531 4.531 14 H 0.035 0.965 15 C 0.023 3.977 16 N -0.940 5.940 17 Si 0.939 3.061 18 H -0.270 1.270 19 H -0.292 1.292 20 H -0.210 1.210 21 O -0.384 6.384 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.153 0.847 26 H 0.202 0.798 27 H 0.225 0.775 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.606 12.742 -8.716 17.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.085 3.915 3 C 0.030 3.970 4 C -0.237 4.237 5 C -0.017 4.017 6 N -0.252 5.252 7 C -0.004 4.004 8 N -0.242 5.242 9 C -0.173 4.173 10 C -0.171 4.171 11 C 0.119 3.881 12 H 0.058 0.942 13 C -0.568 4.568 14 H 0.054 0.946 15 C -0.176 4.176 16 N -0.579 5.579 17 Si 0.761 3.239 18 H -0.196 1.196 19 H -0.218 1.218 20 H -0.132 1.132 21 O -0.304 6.304 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.171 0.829 26 H 0.219 0.781 27 H 0.241 0.759 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.016 13.086 -9.141 17.862 hybrid contribution -0.414 -0.693 1.346 1.570 sum -8.430 12.392 -7.795 16.894 Atomic orbital electron populations 1.22210 0.92052 1.03483 1.03107 1.20964 0.94782 0.87211 0.88590 1.21620 0.89946 0.95877 0.89581 1.22931 1.03617 0.96266 1.00875 1.23753 0.88524 0.93780 0.95602 1.68463 1.15600 1.38456 1.02663 1.25587 0.93379 0.84686 0.96723 1.68124 1.11029 1.17020 1.28047 1.22970 1.01190 0.96370 0.96776 1.22932 0.99228 0.98641 0.96293 1.20970 0.94587 0.80003 0.92580 0.94202 1.21215 1.02761 1.37059 0.95796 0.94624 1.26062 1.01812 0.92948 0.96789 1.70067 1.38486 1.43217 1.06177 0.85898 0.79074 0.81520 0.77391 1.19555 1.21841 1.13153 1.89190 1.85886 1.23529 1.31787 0.91111 0.91610 0.89983 0.82934 0.78108 0.75877 0.88634 0.88831 0.93667 0.89851 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.17 8.47 71.98 0.61 -3.56 16 2 C 0.13 4.33 0.97 -11.17 -0.01 4.32 16 3 C 0.18 5.75 5.84 42.58 0.25 6.00 16 4 C -0.22 -6.18 9.30 22.44 0.21 -5.97 16 5 C 0.15 3.60 11.31 84.70 0.96 4.55 16 6 N -0.54 -14.05 10.44 -200.05 -2.09 -16.13 16 7 C 0.28 7.34 12.29 180.88 2.22 9.56 16 8 N -0.53 -16.21 8.40 -188.06 -1.58 -17.79 16 9 C -0.14 -4.43 6.19 31.58 0.20 -4.23 16 10 C -0.13 -5.31 6.55 31.90 0.21 -5.10 16 11 C 0.17 8.16 2.46 30.53 0.08 8.23 16 12 H 0.04 1.80 7.43 -2.39 -0.02 1.78 16 13 C -0.53 -31.10 9.39 25.60 0.24 -30.86 16 14 H 0.04 2.31 8.01 -2.91 -0.02 2.29 16 15 C 0.02 1.38 5.47 84.65 0.46 1.84 16 16 N -0.94 -59.42 13.96 21.45 0.30 -59.12 16 17 Si 0.94 44.17 27.06 68.60 1.86 46.02 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 H -0.21 -9.08 5.63 99.48 0.56 -8.52 16 21 O -0.38 -17.16 7.95 -148.98 -1.18 -18.35 16 22 H 0.07 1.94 8.12 -2.38 -0.02 1.92 16 23 H 0.06 1.74 7.70 -2.39 -0.02 1.72 16 24 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.15 4.13 7.89 -2.91 -0.02 4.10 16 26 H 0.20 3.21 8.06 -2.92 -0.02 3.18 16 27 H 0.23 3.99 8.06 -2.91 -0.02 3.97 16 28 H 0.10 3.11 6.29 -2.39 -0.02 3.09 16 29 H 0.09 2.51 7.70 -2.39 -0.02 2.50 16 30 H 0.04 1.98 8.04 -2.39 -0.02 1.96 16 31 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -70.86 267.77 3.69 -67.17 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.96 Total: 13.42 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 5.42 Total: -15.21 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -3.37 Total: -93.05 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -1.18 Total: -18.35 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.86 Total: 46.02 kcal Total: -70.86 3.69 -67.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396039536.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.024 kcal (2) G-P(sol) polarization free energy of solvation -70.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds