Wall clock time and date at job start Mon Mar 30 2020 03:12:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.50705 * 109.87044 * 2 1
4 4 C 1.38623 * 120.44609 * 63.70861 * 3 2 1
5 5 C 1.38580 * 118.40139 * 179.76179 * 4 3 2
6 6 N 1.32350 * 119.09914 * 0.51992 * 5 4 3
7 7 C 1.31780 * 120.82220 * 359.74674 * 6 5 4
8 8 N 1.31808 * 121.75415 * 359.97438 * 7 6 5
9 9 C 1.54098 * 109.88183 * 238.99765 * 2 1 3
10 10 C 1.54812 * 104.18733 * 242.60288 * 9 2 1
11 11 C 1.54996 * 102.09305 * 20.87918 * 10 9 2
12 12 H 1.08997 * 110.61731 * 81.63366 * 11 10 9
13 13 C 1.50701 * 110.61829 * 204.47937 * 11 10 9
14 14 H 1.08002 * 119.99761 * 359.97438 * 13 11 10
15 15 C 1.37871 * 119.99694 * 180.27677 * 13 11 10
16 16 N 1.31523 * 119.99908 * 179.72112 * 15 13 11
17 17 Si 1.86800 * 120.00405 * 359.71709 * 15 13 11
18 18 H 1.48500 * 109.47210 * 90.00069 * 17 15 13
19 19 H 1.48504 * 109.47424 * 210.00300 * 17 15 13
20 20 H 1.48502 * 109.46888 * 330.00390 * 17 15 13
21 21 O 1.43740 * 109.88112 * 121.16206 * 2 1 3
22 22 H 1.09006 * 109.46674 * 181.00278 * 1 2 3
23 23 H 1.08997 * 109.47489 * 301.00617 * 1 2 3
24 24 H 1.09006 * 109.47460 * 61.00726 * 1 2 3
25 25 H 1.08005 * 120.80242 * 0.03418 * 4 3 2
26 26 H 1.07990 * 120.45324 * 180.26671 * 5 4 3
27 27 H 1.08007 * 119.12111 * 179.97438 * 7 6 5
28 28 H 1.09001 * 110.49625 * 123.92700 * 9 2 1
29 29 H 1.09002 * 110.60365 * 1.33528 * 9 2 1
30 30 H 1.09003 * 110.90690 * 262.67771 * 10 9 2
31 31 H 1.08999 * 110.90862 * 139.07594 * 10 9 2
32 32 H 0.96995 * 120.00181 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0422 1.4173 0.0000
4 6 1.7831 2.2579 1.0714
5 6 2.2787 3.5513 1.0294
6 7 2.9694 3.9418 -0.0299
7 6 3.1915 3.1165 -1.0330
8 7 2.7404 1.8780 -1.0251
9 6 2.0540 -0.7464 -1.2421
10 6 2.8325 -1.9514 -0.6603
11 6 2.2281 -2.0724 0.7619
12 1 1.2828 -2.6142 0.7323
13 6 3.1980 -2.7508 1.6947
14 1 4.1615 -3.0747 1.3297
15 6 2.8528 -2.9636 3.0124
16 7 3.6970 -3.5606 3.8252
17 14 1.1861 -2.4039 3.6435
18 1 0.1971 -3.4975 3.4669
19 1 1.2921 -2.0603 5.0844
20 1 0.7439 -1.2088 2.8809
21 8 2.0188 -0.6995 1.1567
22 1 -0.3633 -1.0276 0.0180
23 1 -0.3634 0.5294 0.8808
24 1 -0.3634 0.4981 -0.8989
25 1 1.2126 1.9117 1.9206
26 1 2.1003 4.2327 1.8479
27 1 3.7582 3.4642 -1.8842
28 1 2.7197 -0.1053 -1.8200
29 1 1.2252 -1.0905 -1.8609
30 1 3.9004 -1.7381 -0.6123
31 1 2.6433 -2.8540 -1.2413
32 1 3.4544 -3.7099 4.7524
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000396039536.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:08
Heat of formation + Delta-G solvation = -13.145067 kcal
Electronic energy + Delta-G solvation = -16721.763440 eV
Core-core repulsion = 14067.906605 eV
Total energy + Delta-G solvation = -2653.856835 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 234.111 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-42.14525 -40.24351 -35.49587 -34.56872 -33.53289 -32.79450 -31.50580 -28.90342
-26.20980 -25.36609 -24.37158 -21.95756 -21.46841 -19.13134 -18.42936 -18.07853
-16.95746 -16.47657 -16.36815 -16.11206 -15.37857 -15.07564 -14.79739 -14.66625
-14.46839 -13.74687 -13.53304 -13.07061 -12.77754 -12.58374 -12.13019 -12.05605
-11.81807 -11.78472 -11.68163 -11.35129 -11.31428 -10.79261 -10.58310 -10.34044
-10.09127 -8.37003 -6.51296 -0.05670 0.06522 1.37356 1.40199 1.65622
2.40366 2.60550 2.85698 3.05236 3.28949 3.45733 3.65860 3.90446
4.00400 4.10301 4.19227 4.32497 4.37935 4.55292 4.62047 4.69012
4.71599 4.94644 5.02851 5.07276 5.15912 5.33489 5.43642 5.46183
5.52772 6.01493 6.18859 6.36394 6.64785 7.09594 7.24597 8.77445
Molecular weight = 234.11amu
Principal moments of inertia in cm(-1)
A = 0.029528 B = 0.008890 C = 0.008253
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 948.018129 B = 3148.943344 C = 3391.837519
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.125 3.875
3 C 0.176 3.824
4 C -0.215 4.215
5 C 0.149 3.851
6 N -0.537 5.537
7 C 0.284 3.716
8 N -0.527 5.527
9 C -0.135 4.135
10 C -0.133 4.133
11 C 0.174 3.826
12 H 0.040 0.960
13 C -0.531 4.531
14 H 0.035 0.965
15 C 0.023 3.977
16 N -0.940 5.940
17 Si 0.939 3.061
18 H -0.270 1.270
19 H -0.292 1.292
20 H -0.210 1.210
21 O -0.384 6.384
22 H 0.070 0.930
23 H 0.065 0.935
24 H 0.081 0.919
25 H 0.153 0.847
26 H 0.202 0.798
27 H 0.225 0.775
28 H 0.095 0.905
29 H 0.093 0.907
30 H 0.044 0.956
31 H 0.083 0.917
32 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.606 12.742 -8.716 17.675
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.085 3.915
3 C 0.030 3.970
4 C -0.237 4.237
5 C -0.017 4.017
6 N -0.252 5.252
7 C -0.004 4.004
8 N -0.242 5.242
9 C -0.173 4.173
10 C -0.171 4.171
11 C 0.119 3.881
12 H 0.058 0.942
13 C -0.568 4.568
14 H 0.054 0.946
15 C -0.176 4.176
16 N -0.579 5.579
17 Si 0.761 3.239
18 H -0.196 1.196
19 H -0.218 1.218
20 H -0.132 1.132
21 O -0.304 6.304
22 H 0.089 0.911
23 H 0.084 0.916
24 H 0.100 0.900
25 H 0.171 0.829
26 H 0.219 0.781
27 H 0.241 0.759
28 H 0.114 0.886
29 H 0.112 0.888
30 H 0.063 0.937
31 H 0.101 0.899
32 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -8.016 13.086 -9.141 17.862
hybrid contribution -0.414 -0.693 1.346 1.570
sum -8.430 12.392 -7.795 16.894
Atomic orbital electron populations
1.22210 0.92052 1.03483 1.03107 1.20964 0.94782 0.87211 0.88590
1.21620 0.89946 0.95877 0.89581 1.22931 1.03617 0.96266 1.00875
1.23753 0.88524 0.93780 0.95602 1.68463 1.15600 1.38456 1.02663
1.25587 0.93379 0.84686 0.96723 1.68124 1.11029 1.17020 1.28047
1.22970 1.01190 0.96370 0.96776 1.22932 0.99228 0.98641 0.96293
1.20970 0.94587 0.80003 0.92580 0.94202 1.21215 1.02761 1.37059
0.95796 0.94624 1.26062 1.01812 0.92948 0.96789 1.70067 1.38486
1.43217 1.06177 0.85898 0.79074 0.81520 0.77391 1.19555 1.21841
1.13153 1.89190 1.85886 1.23529 1.31787 0.91111 0.91610 0.89983
0.82934 0.78108 0.75877 0.88634 0.88831 0.93667 0.89851 0.92271
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.17 8.47 71.98 0.61 -3.56 16
2 C 0.13 4.33 0.97 -11.17 -0.01 4.32 16
3 C 0.18 5.75 5.84 42.58 0.25 6.00 16
4 C -0.22 -6.18 9.30 22.44 0.21 -5.97 16
5 C 0.15 3.60 11.31 84.70 0.96 4.55 16
6 N -0.54 -14.05 10.44 -200.05 -2.09 -16.13 16
7 C 0.28 7.34 12.29 180.88 2.22 9.56 16
8 N -0.53 -16.21 8.40 -188.06 -1.58 -17.79 16
9 C -0.14 -4.43 6.19 31.58 0.20 -4.23 16
10 C -0.13 -5.31 6.55 31.90 0.21 -5.10 16
11 C 0.17 8.16 2.46 30.53 0.08 8.23 16
12 H 0.04 1.80 7.43 -2.39 -0.02 1.78 16
13 C -0.53 -31.10 9.39 25.60 0.24 -30.86 16
14 H 0.04 2.31 8.01 -2.91 -0.02 2.29 16
15 C 0.02 1.38 5.47 84.65 0.46 1.84 16
16 N -0.94 -59.42 13.96 21.45 0.30 -59.12 16
17 Si 0.94 44.17 27.06 68.60 1.86 46.02 16
18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16
19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16
20 H -0.21 -9.08 5.63 99.48 0.56 -8.52 16
21 O -0.38 -17.16 7.95 -148.98 -1.18 -18.35 16
22 H 0.07 1.94 8.12 -2.38 -0.02 1.92 16
23 H 0.06 1.74 7.70 -2.39 -0.02 1.72 16
24 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16
25 H 0.15 4.13 7.89 -2.91 -0.02 4.10 16
26 H 0.20 3.21 8.06 -2.92 -0.02 3.18 16
27 H 0.23 3.99 8.06 -2.91 -0.02 3.97 16
28 H 0.10 3.11 6.29 -2.39 -0.02 3.09 16
29 H 0.09 2.51 7.70 -2.39 -0.02 2.50 16
30 H 0.04 1.98 8.04 -2.39 -0.02 1.96 16
31 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16
32 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16
Total: -1.00 -70.86 267.77 3.69 -67.17
By element:
Atomic # 1 Polarization: 12.46 SS G_CDS: 0.96 Total: 13.42 kcal
Atomic # 6 Polarization: -20.63 SS G_CDS: 5.42 Total: -15.21 kcal
Atomic # 7 Polarization: -89.68 SS G_CDS: -3.37 Total: -93.05 kcal
Atomic # 8 Polarization: -17.16 SS G_CDS: -1.18 Total: -18.35 kcal
Atomic # 14 Polarization: 44.17 SS G_CDS: 1.86 Total: 46.02 kcal
Total: -70.86 3.69 -67.17 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396039536.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.024 kcal
(2) G-P(sol) polarization free energy of solvation -70.856 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.831 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.169 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.145 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds