Wall clock time and date at job start Mon Mar 30 2020 03:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.82440 * 2 1 4 4 C 1.38629 * 120.45144 * 64.53039 * 3 2 1 5 5 C 1.38570 * 118.40237 * 180.24593 * 4 3 2 6 6 N 1.32345 * 119.10512 * 359.52021 * 5 4 3 7 7 C 1.31785 * 120.81946 * 0.25858 * 6 5 4 8 8 N 1.31808 * 121.75473 * 359.97438 * 7 6 5 9 9 C 1.54382 * 109.83327 * 239.11281 * 2 1 3 10 10 C 1.55456 * 102.18600 * 261.70068 * 9 2 1 11 11 C 1.54946 * 100.98859 * 325.96048 * 10 9 2 12 12 H 1.08997 * 110.31047 * 277.47381 * 11 10 9 13 13 C 1.50704 * 110.39245 * 155.34978 * 11 10 9 14 14 H 1.07996 * 120.00061 * 2.78789 * 13 11 10 15 15 C 1.37874 * 119.99847 * 182.78125 * 13 11 10 16 16 N 1.31518 * 120.00281 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00035 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46862 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47229 * 120.00040 * 17 15 13 20 20 H 1.48502 * 109.47442 * 240.00364 * 17 15 13 21 21 O 1.43238 * 109.83013 * 120.88647 * 2 1 3 22 22 H 1.09000 * 109.46879 * 60.70260 * 1 2 3 23 23 H 1.09001 * 109.47051 * 180.69871 * 1 2 3 24 24 H 1.09004 * 109.47359 * 300.70024 * 1 2 3 25 25 H 1.07999 * 120.79646 * 0.02562 * 4 3 2 26 26 H 1.08002 * 120.45057 * 179.80607 * 5 4 3 27 27 H 1.08001 * 119.12256 * 179.97438 * 7 6 5 28 28 H 1.09001 * 110.84791 * 19.93824 * 9 2 1 29 29 H 1.08998 * 110.84745 * 143.56298 * 9 2 1 30 30 H 1.08994 * 111.14678 * 208.00188 * 10 9 2 31 31 H 1.09009 * 111.09249 * 83.89075 * 10 9 2 32 32 H 0.96997 * 120.00377 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4176 0.0000 4 6 1.7958 2.2529 1.0789 5 6 2.2811 3.5500 1.0319 6 7 2.9662 3.9429 -0.0300 7 6 3.1840 3.1195 -1.0356 8 7 2.7339 1.8807 -1.0278 9 6 2.0538 -0.7455 -1.2463 10 6 2.3714 -2.1561 -0.6754 11 6 2.8424 -1.7962 0.7561 12 1 3.8913 -1.4998 0.7460 13 6 2.6392 -2.9652 1.6853 14 1 2.2583 -3.9001 1.3016 15 6 2.9396 -2.8412 3.0251 16 7 3.4031 -1.7026 3.4925 17 14 2.6884 -4.2904 4.1767 18 1 2.1602 -5.4467 3.4092 19 1 3.9854 -4.6593 4.7985 20 1 1.7190 -3.9172 5.2380 21 8 2.0159 -0.6917 1.1564 22 1 -0.3633 0.5029 -0.8962 23 1 -0.3633 -1.0276 0.0125 24 1 -0.3634 0.5247 0.8837 25 1 1.2370 1.9021 1.9339 26 1 2.1066 4.2297 1.8529 27 1 3.7462 3.4691 -1.8889 28 1 1.2846 -0.8015 -2.0166 29 1 2.9563 -0.2709 -1.6314 30 1 3.1680 -2.6391 -1.2414 31 1 1.4775 -2.7794 -0.6498 32 1 3.6142 -1.6152 4.4352 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396039544.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:13 Heat of formation + Delta-G solvation = -17.767043 kcal Electronic energy + Delta-G solvation = -16642.989831 eV Core-core repulsion = 13988.932572 eV Total energy + Delta-G solvation = -2654.057259 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.08611 -40.03979 -35.45534 -34.44522 -33.41984 -32.71747 -31.37178 -28.43708 -26.18321 -25.30023 -24.51647 -22.15713 -21.35224 -18.64554 -18.28653 -18.12795 -16.92429 -16.59987 -16.29585 -15.93818 -15.42046 -15.17827 -14.61254 -14.27080 -14.00389 -13.63942 -13.45419 -13.11538 -12.83542 -12.37461 -12.25650 -12.15047 -11.98094 -11.80136 -11.62468 -11.35508 -11.00899 -10.76487 -10.53098 -10.27965 -9.92327 -8.15815 -6.36686 -0.01274 0.08861 1.40732 1.41788 1.54366 2.40387 2.73539 2.91111 3.15820 3.29962 3.45835 3.72240 3.91444 4.06709 4.15196 4.22789 4.39223 4.55038 4.61662 4.68937 4.75610 4.79626 4.99297 5.09388 5.13727 5.17787 5.35898 5.47763 5.57628 5.73987 6.03705 6.16165 6.56736 6.97375 7.12188 7.39380 8.92179 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.032874 B = 0.007875 C = 0.007093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.524573 B = 3554.639634 C = 3946.583508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.125 3.875 3 C 0.165 3.835 4 C -0.212 4.212 5 C 0.146 3.854 6 N -0.537 5.537 7 C 0.280 3.720 8 N -0.528 5.528 9 C -0.126 4.126 10 C -0.139 4.139 11 C 0.205 3.795 12 H -0.018 1.018 13 C -0.551 4.551 14 H 0.069 0.931 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.962 3.038 18 H -0.260 1.260 19 H -0.279 1.279 20 H -0.279 1.279 21 O -0.368 6.368 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.145 0.855 26 H 0.200 0.800 27 H 0.226 0.774 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 6.996 -7.184 11.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.084 3.916 3 C 0.019 3.981 4 C -0.234 4.234 5 C -0.019 4.019 6 N -0.251 5.251 7 C -0.008 4.008 8 N -0.244 5.244 9 C -0.163 4.163 10 C -0.176 4.176 11 C 0.149 3.851 12 H -0.001 1.001 13 C -0.589 4.589 14 H 0.087 0.913 15 C -0.179 4.179 16 N -0.539 5.539 17 Si 0.787 3.213 18 H -0.184 1.184 19 H -0.204 1.204 20 H -0.205 1.205 21 O -0.287 6.287 22 H 0.098 0.902 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.163 0.837 26 H 0.217 0.783 27 H 0.242 0.758 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.171 7.446 -7.605 11.431 hybrid contribution -0.167 -0.920 1.485 1.755 sum -4.338 6.525 -6.120 9.942 Atomic orbital electron populations 1.21948 0.91641 1.03118 1.02389 1.21015 0.95197 0.86490 0.88946 1.22183 0.89759 0.96812 0.89337 1.22859 1.03582 0.96254 1.00679 1.23697 0.88770 0.93695 0.95714 1.68450 1.15544 1.38572 1.02576 1.25601 0.93554 0.84883 0.96760 1.68205 1.11105 1.16863 1.28191 1.23025 1.02538 0.94359 0.96424 1.23247 1.01428 0.96908 0.96035 1.20394 0.88488 0.84478 0.91697 1.00064 1.21544 1.45710 0.97341 0.94281 0.91308 1.25965 0.93419 0.98340 1.00173 1.70193 1.42956 1.26337 1.14423 0.85463 0.77866 0.79442 0.78571 1.18409 1.20431 1.20521 1.88804 1.67418 1.44600 1.27886 0.90193 0.91356 0.92255 0.83728 0.78287 0.75784 0.88627 0.90292 0.90690 0.90903 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 8.59 71.98 0.62 -3.73 16 2 C 0.12 4.94 1.04 -11.07 -0.01 4.92 16 3 C 0.16 6.17 5.82 42.58 0.25 6.42 16 4 C -0.21 -7.23 9.29 22.44 0.21 -7.02 16 5 C 0.15 4.18 11.30 84.69 0.96 5.13 16 6 N -0.54 -15.87 10.44 -200.05 -2.09 -17.96 16 7 C 0.28 8.14 12.29 180.88 2.22 10.37 16 8 N -0.53 -18.22 8.60 -188.06 -1.62 -19.84 16 9 C -0.13 -4.56 5.85 31.91 0.19 -4.37 16 10 C -0.14 -5.70 6.54 32.10 0.21 -5.49 16 11 C 0.20 10.83 3.27 30.51 0.10 10.93 16 12 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 13 C -0.55 -31.06 8.81 25.60 0.23 -30.84 16 14 H 0.07 3.70 7.77 -2.91 -0.02 3.68 16 15 C 0.02 1.31 5.42 84.65 0.46 1.77 16 16 N -0.90 -54.43 12.93 21.45 0.28 -54.15 16 17 Si 0.96 43.73 29.54 68.60 2.03 45.75 16 18 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 O -0.37 -18.97 9.72 -148.98 -1.45 -20.41 16 22 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.06 1.90 7.76 -2.38 -0.02 1.88 16 25 H 0.14 4.94 7.94 -2.91 -0.02 4.92 16 26 H 0.20 4.03 8.06 -2.91 -0.02 4.01 16 27 H 0.23 4.60 8.06 -2.91 -0.02 4.58 16 28 H 0.10 2.86 7.82 -2.39 -0.02 2.84 16 29 H 0.08 2.95 6.79 -2.39 -0.02 2.93 16 30 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.07 2.87 8.05 -2.38 -0.02 2.85 16 32 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -68.33 273.88 3.68 -64.64 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 1.11 Total: 13.87 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 5.42 Total: -11.91 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -3.43 Total: -91.95 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -1.45 Total: -20.41 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -68.33 3.68 -64.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396039544.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.878 kcal (2) G-P(sol) polarization free energy of solvation -68.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds