Wall clock time and date at job start Mon Mar 30 2020 03:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00270 * 2 1 4 4 H 1.48500 * 109.47150 * 269.99789 * 3 2 1 5 5 H 1.48500 * 109.47152 * 30.00079 * 3 2 1 6 6 H 1.48500 * 109.47158 * 149.99842 * 3 2 1 7 7 C 1.37878 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99933 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00370 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47395 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47229 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47294 * 180.02562 * 11 10 9 13 13 O 1.21713 * 120.00197 * 359.97438 * 12 11 10 14 14 N 1.32303 * 120.00153 * 179.97438 * 12 11 10 15 15 C 1.34674 * 120.00122 * 244.80442 * 14 12 11 16 16 C 1.41185 * 120.66785 * 175.14053 * 15 14 12 17 17 C 1.35344 * 119.26637 * 180.02562 * 16 15 14 18 18 N 1.35432 * 120.68172 * 359.97438 * 17 16 15 19 19 H 0.96997 * 119.28188 * 179.97438 * 18 17 16 20 20 C 1.35427 * 121.43765 * 0.02562 * 18 17 16 21 21 C 1.35350 * 120.68905 * 0.02562 * 20 18 17 22 22 H 0.97002 * 119.99982 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.46537 * 60.00146 * 9 7 2 24 24 H 1.09000 * 109.47463 * 300.00587 * 9 7 2 25 25 H 1.08998 * 109.47499 * 60.00162 * 10 9 7 26 26 H 1.09009 * 109.47018 * 300.00306 * 10 9 7 27 27 H 1.08999 * 109.47823 * 59.99727 * 11 10 9 28 28 H 1.09000 * 109.47173 * 300.00116 * 11 10 9 29 29 H 1.08002 * 120.36586 * 359.97438 * 16 15 14 30 30 H 1.08002 * 119.65783 * 179.72645 * 17 16 15 31 31 H 1.08000 * 119.65643 * 180.02562 * 20 18 17 32 32 H 1.07995 * 120.37195 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6366 0.0001 11 6 5.5514 -2.6367 0.0001 12 6 6.0537 -4.0575 -0.0004 13 8 5.2628 -4.9827 -0.0003 14 7 7.3544 -4.2993 -0.0009 15 6 7.9253 -4.9103 -1.0566 16 6 9.3251 -5.0839 -1.1178 17 6 9.8689 -5.7014 -2.1924 18 7 9.0850 -6.1509 -3.2012 19 1 9.4962 -6.5903 -3.9620 20 6 7.7396 -5.9993 -3.1715 21 6 7.1361 -5.3892 -2.1249 22 1 -0.4850 0.8401 -0.0004 23 1 3.8751 -0.6797 0.8895 24 1 3.8746 -0.6809 -0.8904 25 1 3.6578 -3.1507 -0.8896 26 1 3.6584 -3.1503 0.8904 27 1 5.9148 -2.1228 0.8900 28 1 5.9148 -2.1229 -0.8899 29 1 9.9551 -4.7271 -0.3164 30 1 10.9394 -5.8336 -2.2479 31 1 7.1419 -6.3691 -3.9916 32 1 6.0627 -5.2714 -2.1063 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593965330.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:11 Heat of formation + Delta-G solvation = -21.288749 kcal Electronic energy + Delta-G solvation = -15320.103784 eV Core-core repulsion = 12665.893812 eV Total energy + Delta-G solvation = -2654.209972 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.71441 -40.28851 -36.37139 -35.85093 -34.14760 -32.62301 -31.94396 -30.07790 -26.19293 -24.62000 -24.14132 -21.96404 -20.55663 -19.97077 -18.89626 -17.91801 -17.55131 -16.62007 -16.50569 -16.01759 -15.88741 -15.32671 -15.10340 -14.79326 -14.41973 -13.99653 -13.70100 -13.22875 -12.85462 -12.76452 -12.52545 -12.34257 -11.83882 -11.76654 -11.56788 -11.39590 -11.24576 -10.78138 -10.59741 -10.07843 -8.51760 -8.30948 -6.36692 -0.00642 0.36129 1.34792 1.38871 1.42302 1.52136 2.05861 2.36725 2.60661 3.03142 3.35121 3.79330 3.98157 4.11786 4.15875 4.19200 4.22733 4.43506 4.64993 4.78013 4.84551 4.90642 4.98898 5.15187 5.32771 5.45223 5.51916 5.61825 5.70817 5.81868 6.26939 6.33540 6.69942 6.73193 7.27379 7.43101 8.86696 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.046365 B = 0.004349 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.754386 B = 6436.185525 C = 6511.236152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.961 3.039 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.246 1.246 7 C -0.541 4.541 8 H 0.021 0.979 9 C -0.007 4.007 10 C -0.078 4.078 11 C -0.133 4.133 12 C 0.500 3.500 13 O -0.584 6.584 14 N -0.706 5.706 15 C 0.292 3.708 16 C -0.235 4.235 17 C 0.175 3.825 18 N -0.555 5.555 19 H 0.451 0.549 20 C 0.185 3.815 21 C -0.309 4.309 22 H 0.268 0.732 23 H 0.024 0.976 24 H 0.028 0.972 25 H 0.038 0.962 26 H 0.031 0.969 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.155 0.845 30 H 0.236 0.764 31 H 0.213 0.787 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.977 -12.630 -13.381 35.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.169 1.169 7 C -0.579 4.579 8 H 0.039 0.961 9 C -0.044 4.044 10 C -0.116 4.116 11 C -0.173 4.173 12 C 0.290 3.710 13 O -0.466 6.466 14 N -0.449 5.449 15 C 0.142 3.858 16 C -0.261 4.261 17 C 0.043 3.957 18 N -0.158 5.158 19 H 0.293 0.707 20 C 0.051 3.949 21 C -0.337 4.337 22 H 0.077 0.923 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.173 0.827 30 H 0.252 0.748 31 H 0.229 0.771 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 29.530 -12.644 -12.569 34.494 hybrid contribution -1.300 0.375 -0.068 1.355 sum 28.230 -12.269 -12.636 33.274 Atomic orbital electron populations 1.70090 1.08478 1.28393 1.52426 1.26145 0.95790 1.03927 0.93652 0.85505 0.79384 0.77220 0.79612 1.18418 1.20477 1.16930 1.21493 0.92221 0.93088 1.51126 0.96063 1.19525 0.93937 0.93964 0.96988 1.21052 0.93204 0.97394 0.99945 1.21769 0.96112 0.94703 1.04669 1.21762 0.86527 0.91342 0.71354 1.90659 1.61113 1.48593 1.46207 1.68166 1.12087 1.37399 1.27209 1.19414 0.95191 0.83292 0.87881 1.20859 0.91680 1.10470 1.03091 1.22681 0.99298 0.88899 0.84835 1.41423 1.05206 1.47889 1.21276 0.70652 1.22233 0.84484 0.90874 0.97313 1.21684 1.01071 1.11964 0.98974 0.92294 0.95737 0.95407 0.94313 0.94975 0.88565 0.88010 0.82713 0.74829 0.77071 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.86 13.96 21.45 0.30 -63.56 16 2 C 0.00 0.07 5.47 84.66 0.46 0.53 16 3 Si 0.96 47.07 27.47 68.60 1.88 48.95 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 7 C -0.54 -35.15 9.66 25.60 0.25 -34.90 16 8 H 0.02 1.53 7.99 -2.91 -0.02 1.50 16 9 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 10 C -0.08 -3.96 4.44 30.59 0.14 -3.82 16 11 C -0.13 -5.66 5.77 29.85 0.17 -5.48 16 12 C 0.50 22.44 6.16 88.04 0.54 22.99 16 13 O -0.58 -30.19 15.44 -4.39 -0.07 -30.26 16 14 N -0.71 -27.48 10.45 -306.35 -3.20 -30.68 16 15 C 0.29 8.17 6.60 40.16 0.26 8.43 16 16 C -0.24 -3.51 10.00 22.33 0.22 -3.28 16 17 C 0.18 0.21 11.17 83.47 0.93 1.15 16 18 N -0.55 0.66 5.23 -195.19 -1.02 -0.36 16 19 H 0.45 -5.11 8.90 -92.71 -0.82 -5.93 16 20 C 0.18 1.41 11.17 83.47 0.93 2.34 16 21 C -0.31 -7.36 9.05 22.33 0.20 -7.16 16 22 H 0.27 16.52 8.31 -92.71 -0.77 15.75 16 23 H 0.02 1.27 7.20 -2.38 -0.02 1.25 16 24 H 0.03 1.39 7.57 -2.39 -0.02 1.37 16 25 H 0.04 2.04 8.10 -2.39 -0.02 2.02 16 26 H 0.03 1.75 8.10 -2.38 -0.02 1.73 16 27 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 28 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 29 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.24 -2.47 8.06 -2.91 -0.02 -2.50 16 31 H 0.21 -0.14 8.06 -2.91 -0.02 -0.16 16 32 H 0.11 3.56 6.36 -2.91 -0.02 3.54 16 Total: -1.00 -103.62 279.80 2.37 -101.25 By element: Atomic # 1 Polarization: -6.12 SS G_CDS: 0.24 Total: -5.88 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 4.24 Total: -19.46 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -3.92 Total: -94.60 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.07 Total: -30.26 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.88 Total: 48.95 kcal Total: -103.62 2.37 -101.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593965330.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.957 kcal (2) G-P(sol) polarization free energy of solvation -103.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds