Wall clock time and date at job start Mon Mar 30 2020 03:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38841 * 120.34724 * 2 1 4 4 C 1.38356 * 118.50028 * 180.02562 * 3 2 1 5 5 C 1.39047 * 119.09848 * 0.02562 * 4 3 2 6 6 N 1.39401 * 119.69335 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99597 * 185.08186 * 6 5 4 8 8 O 1.21275 * 119.99877 * 354.92396 * 7 6 5 9 9 C 1.50700 * 119.99598 * 174.92396 * 7 6 5 10 10 H 1.09007 * 109.47263 * 299.99741 * 9 7 6 11 11 C 1.52999 * 109.47402 * 60.00125 * 9 7 6 12 12 C 1.50707 * 109.46734 * 180.02562 * 9 7 6 13 13 H 1.07995 * 120.00216 * 359.97438 * 12 9 7 14 14 C 1.37882 * 119.99599 * 179.97438 * 12 9 7 15 15 N 1.31515 * 119.99661 * 180.02562 * 14 12 9 16 16 Si 1.86803 * 120.00153 * 359.97438 * 14 12 9 17 17 H 1.48499 * 109.46912 * 90.00121 * 16 14 12 18 18 H 1.48494 * 109.46902 * 210.00067 * 16 14 12 19 19 H 1.48494 * 109.47021 * 330.00311 * 16 14 12 20 20 N 1.32353 * 120.60530 * 0.27617 * 5 4 3 21 21 C 1.31931 * 121.63693 * 359.43232 * 20 5 4 22 22 H 1.09007 * 109.46958 * 89.99839 * 1 2 3 23 23 H 1.08997 * 109.47397 * 209.99575 * 1 2 3 24 24 H 1.09000 * 109.47463 * 330.00072 * 1 2 3 25 25 H 1.07997 * 120.74943 * 0.02562 * 3 2 1 26 26 H 1.07997 * 120.45436 * 180.02562 * 4 3 2 27 27 H 0.96991 * 120.00358 * 5.09150 * 6 5 4 28 28 H 1.08992 * 109.47008 * 300.00149 * 11 9 7 29 29 H 1.08997 * 109.46993 * 179.97438 * 11 9 7 30 30 H 1.09002 * 109.46676 * 60.00052 * 11 9 7 31 31 H 0.96999 * 120.00031 * 179.97438 * 15 14 12 32 32 H 1.08000 * 119.57416 * 180.29167 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2084 1.1982 0.0000 4 6 3.5913 1.1536 -0.0005 5 6 4.2280 -0.0826 -0.0016 6 7 5.6207 -0.1419 -0.0027 7 6 6.2443 -1.3322 -0.1071 8 8 5.5971 -2.3579 -0.1074 9 6 7.7457 -1.3885 -0.2236 10 1 8.0616 -0.8466 -1.1151 11 6 8.3777 -0.7475 1.0136 12 6 8.1880 -2.8256 -0.3268 13 1 7.4552 -3.6187 -0.3093 14 6 9.5282 -3.1276 -0.4434 15 7 9.9141 -4.3816 -0.5340 16 14 10.7957 -1.7557 -0.4743 17 1 11.2379 -1.4591 0.9119 18 1 11.9642 -2.1797 -1.2866 19 1 10.1924 -0.5379 -1.0727 20 7 3.5238 -1.2032 -0.0076 21 6 2.2045 -1.1916 -0.0016 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5137 24 1 -0.3634 0.8900 0.5138 25 1 1.6864 2.1436 0.0004 26 1 4.1684 2.0664 -0.0001 27 1 6.1410 0.6732 0.0718 28 1 8.0577 0.2917 1.0878 29 1 9.4636 -0.7887 0.9295 30 1 8.0618 -1.2895 1.9050 31 1 10.8569 -4.5942 -0.6165 32 1 1.6633 -2.1262 -0.0020 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596731749.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:36 Heat of formation + Delta-G solvation = 10.828550 kcal Electronic energy + Delta-G solvation = -15921.946562 eV Core-core repulsion = 13269.129301 eV Total energy + Delta-G solvation = -2652.817261 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.46756 -38.60621 -34.73713 -33.87313 -32.73461 -31.51830 -30.87843 -26.67728 -25.16865 -24.04382 -23.01754 -21.53858 -19.51293 -17.85624 -16.80932 -16.20361 -15.42646 -15.10158 -14.78780 -14.72166 -14.06670 -13.89108 -13.27173 -13.02376 -12.94600 -12.51812 -12.47452 -12.33109 -11.74106 -11.61537 -11.05451 -10.66467 -10.36339 -10.12462 -9.69663 -9.66169 -9.42300 -9.12775 -8.60116 -8.38915 -7.86830 -6.06005 -4.06898 1.25645 1.45794 3.22141 3.28964 3.35110 3.36972 3.47871 4.13385 4.36377 4.62302 4.84503 4.95795 5.06327 5.21552 5.22991 5.41211 5.50751 5.69753 5.82376 5.86954 6.01425 6.06164 6.23727 6.30911 6.39145 6.55328 6.65876 7.06839 7.12212 7.46419 7.73216 8.37569 8.54901 9.02594 9.14460 9.52018 11.06882 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.057748 B = 0.005687 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.748124 B = 4922.240000 C = 5307.894024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.191 4.191 3 C -0.050 4.050 4 C -0.217 4.217 5 C 0.368 3.632 6 N -0.673 5.673 7 C 0.513 3.487 8 O -0.458 6.458 9 C -0.002 4.002 10 H 0.055 0.945 11 C -0.147 4.147 12 C -0.507 4.507 13 H 0.094 0.906 14 C 0.071 3.929 15 N -0.894 5.894 16 Si 0.884 3.116 17 H -0.278 1.278 18 H -0.295 1.295 19 H -0.267 1.267 20 N -0.473 5.473 21 C 0.136 3.864 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.131 0.869 26 H 0.132 0.868 27 H 0.411 0.589 28 H 0.032 0.968 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.265 0.735 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.547 14.579 1.563 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.194 4.194 3 C -0.076 4.076 4 C -0.241 4.241 5 C 0.137 3.863 6 N -0.320 5.320 7 C 0.300 3.700 8 O -0.324 6.324 9 C -0.024 4.024 10 H 0.072 0.928 11 C -0.204 4.204 12 C -0.546 4.546 13 H 0.112 0.888 14 C -0.131 4.131 15 N -0.532 5.532 16 Si 0.715 3.285 17 H -0.205 1.205 18 H -0.222 1.222 19 H -0.193 1.193 20 N -0.187 5.187 21 C -0.023 4.023 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.149 0.851 26 H 0.150 0.850 27 H 0.248 0.752 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.258 12.795 1.511 18.487 hybrid contribution 0.724 1.988 0.052 2.117 sum -12.533 14.783 1.563 19.444 Atomic orbital electron populations 1.20583 0.90593 1.02533 1.02008 1.20762 0.97313 0.94268 1.07094 1.21144 0.93075 0.97928 0.95407 1.21453 0.95500 0.97081 1.10048 1.18740 0.85641 0.89414 0.92538 1.44289 1.02882 1.11980 1.72843 1.21642 0.91624 0.81777 0.74948 1.90694 1.66915 1.32659 1.42164 1.19357 0.86558 1.00625 0.95811 0.92765 1.22149 1.00665 0.97635 0.99986 1.20923 0.93745 0.89504 1.50388 0.88761 1.24973 0.98076 0.95325 0.94680 1.69880 1.16226 1.17215 1.49865 0.86913 0.81312 0.82670 0.77653 1.20460 1.22234 1.19252 1.67802 1.07622 1.28610 1.14635 1.22619 0.88983 0.97406 0.93333 0.91560 0.91556 0.91918 0.85085 0.84986 0.75237 0.94885 0.93032 0.92179 0.92506 0.82901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.03 36.00 0.36 -0.45 16 2 C -0.19 -2.25 5.90 -104.46 -0.62 -2.87 16 3 C -0.05 -0.55 9.85 -39.31 -0.39 -0.94 16 4 C -0.22 -2.75 9.94 -39.24 -0.39 -3.14 16 5 C 0.37 6.30 7.42 -154.70 -1.15 5.15 16 6 N -0.67 -11.75 5.31 -11.42 -0.06 -11.81 16 7 C 0.51 11.61 7.11 -10.98 -0.08 11.53 16 8 O -0.46 -12.32 13.72 5.56 0.08 -12.24 16 9 C 0.00 -0.04 2.24 -92.92 -0.21 -0.25 16 10 H 0.05 1.22 7.20 -51.92 -0.37 0.85 16 11 C -0.15 -2.98 8.57 37.16 0.32 -2.66 16 12 C -0.51 -14.74 8.96 -34.44 -0.31 -15.05 16 13 H 0.09 3.13 7.00 -52.49 -0.37 2.76 16 14 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 15 N -0.89 -27.71 13.96 55.43 0.77 -26.94 16 16 Si 0.88 21.17 24.38 -169.99 -4.14 17.03 16 17 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.27 -5.91 6.53 56.52 0.37 -5.54 16 20 N -0.47 -9.09 7.89 -12.36 -0.10 -9.19 16 21 C 0.14 2.03 10.85 -17.57 -0.19 1.83 16 22 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 23 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 24 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 25 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 26 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.41 5.48 7.98 -40.82 -0.33 5.16 16 28 H 0.03 0.51 7.46 -51.93 -0.39 0.13 16 29 H 0.05 1.09 3.28 -51.93 -0.17 0.92 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 269.94 15.07 4.07 4.07 Total: -1.00 -35.32 269.94 -5.89 -41.21 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -3.76 Total: 2.75 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -2.74 Total: -4.88 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.62 Total: -47.93 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.08 Total: -12.24 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.14 Total: 17.03 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -35.32 -5.89 -41.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596731749.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.034 kcal (2) G-P(sol) polarization free energy of solvation -35.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds