Wall clock time and date at job start Mon Mar 30 2020 03:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38111 * 119.57930 * 2 1 4 4 C 1.38799 * 119.30962 * 180.02562 * 3 2 1 5 5 C 1.38395 * 118.49225 * 0.27683 * 4 3 2 6 6 C 1.38997 * 119.10667 * 359.43210 * 5 4 3 7 7 N 1.39403 * 119.69874 * 180.31984 * 6 5 4 8 8 C 1.34776 * 119.99940 * 174.87504 * 7 6 5 9 9 O 1.21273 * 120.00417 * 5.09950 * 8 7 6 10 10 C 1.50704 * 120.00112 * 185.09249 * 8 7 6 11 11 H 1.08997 * 109.47000 * 59.99831 * 10 8 7 12 12 C 1.53003 * 109.46976 * 300.00618 * 10 8 7 13 13 C 1.50698 * 109.47582 * 180.02562 * 10 8 7 14 14 H 1.08002 * 119.99266 * 0.02562 * 13 10 8 15 15 C 1.37873 * 120.00088 * 180.02562 * 13 10 8 16 16 N 1.31510 * 120.00247 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99762 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47308 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47260 * 119.99976 * 17 15 13 20 20 H 1.48497 * 109.47313 * 239.99893 * 17 15 13 21 21 N 1.31909 * 119.57400 * 179.97438 * 2 1 3 22 22 H 1.08999 * 109.46760 * 89.99856 * 1 2 3 23 23 H 1.08996 * 109.46842 * 209.99975 * 1 2 3 24 24 H 1.09001 * 109.46799 * 330.00466 * 1 2 3 25 25 H 1.08003 * 120.34614 * 359.97365 * 3 2 1 26 26 H 1.08004 * 120.74732 * 179.97438 * 4 3 2 27 27 H 1.08000 * 120.44694 * 179.70432 * 5 4 3 28 28 H 0.96997 * 119.99842 * 354.88100 * 7 6 5 29 29 H 1.09005 * 109.46915 * 299.99493 * 12 10 8 30 30 H 1.08998 * 109.47523 * 59.99425 * 12 10 8 31 31 H 1.09001 * 109.47152 * 180.02562 * 12 10 8 32 32 H 0.97006 * 120.00103 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2011 0.0000 4 6 3.5768 1.1946 -0.0005 5 6 4.2313 -0.0248 -0.0069 6 6 3.4810 -1.1949 -0.0005 7 7 4.1275 -2.4299 -0.0001 8 6 3.4106 -3.5658 0.1103 9 8 2.1988 -3.5199 0.1162 10 6 4.1149 -4.8931 0.2263 11 1 4.7464 -4.8929 1.1147 12 6 4.9805 -5.1214 -1.0145 13 6 3.0936 -5.9959 0.3357 14 1 2.0400 -5.7593 0.3220 15 6 3.5045 -7.3068 0.4531 16 7 4.7875 -7.5949 0.4692 17 14 2.2385 -8.6736 0.5893 18 1 0.8735 -8.0901 0.5473 19 1 2.4079 -9.6199 -0.5426 20 1 2.4276 -9.3974 1.8721 21 7 2.1581 -1.1472 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6476 2.1357 -0.0004 26 1 4.1333 2.1202 -0.0010 27 1 5.3104 -0.0667 -0.0124 28 1 5.0934 -2.4717 -0.0792 29 1 4.3489 -5.1216 -1.9030 30 1 5.7191 -4.3238 -1.0940 31 1 5.4895 -6.0816 -0.9308 32 1 5.0765 -8.5172 0.5514 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596818379.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:00 Heat of formation + Delta-G solvation = -20.153256 kcal Electronic energy + Delta-G solvation = -16006.276231 eV Core-core repulsion = 13352.115498 eV Total energy + Delta-G solvation = -2654.160733 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.67907 -40.01777 -36.04521 -35.78497 -33.65238 -32.90154 -31.64590 -28.37168 -27.23343 -25.36001 -23.55916 -23.16353 -21.06237 -18.81906 -18.17356 -17.76023 -16.99509 -16.58743 -16.39788 -16.07891 -15.25526 -15.10693 -14.61557 -14.48737 -13.79781 -13.66913 -13.34738 -13.08048 -12.99221 -12.81169 -12.69872 -12.59393 -12.24892 -12.05479 -11.52504 -11.07954 -10.86712 -10.63520 -10.51907 -9.79224 -9.10124 -8.18051 -6.28354 0.19256 0.49515 1.38007 1.39829 1.53598 1.93321 2.09117 2.44275 2.98975 3.11851 3.45214 3.94893 4.12365 4.22575 4.34089 4.48694 4.67796 4.71126 4.76187 4.80623 4.89152 4.95887 5.14331 5.19922 5.31929 5.44590 5.48008 5.71331 5.87323 6.00024 6.15631 6.45595 6.79088 7.23001 7.37925 7.57379 8.88081 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.040633 B = 0.006179 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.927374 B = 4530.547690 C = 5125.076021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.125 3.875 3 C -0.205 4.205 4 C -0.041 4.041 5 C -0.215 4.215 6 C 0.334 3.666 7 N -0.660 5.660 8 C 0.509 3.491 9 O -0.522 6.522 10 C 0.028 3.972 11 H 0.046 0.954 12 C -0.121 4.121 13 C -0.530 4.530 14 H 0.046 0.954 15 C 0.022 3.978 16 N -0.909 5.909 17 Si 0.956 3.044 18 H -0.282 1.282 19 H -0.272 1.272 20 H -0.273 1.273 21 N -0.534 5.534 22 H 0.082 0.918 23 H 0.049 0.951 24 H 0.108 0.892 25 H 0.168 0.832 26 H 0.180 0.820 27 H 0.165 0.835 28 H 0.428 0.572 29 H 0.021 0.979 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 18.124 -1.486 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.013 4.013 3 C -0.226 4.226 4 C -0.066 4.066 5 C -0.238 4.238 6 C 0.103 3.897 7 N -0.308 5.308 8 C 0.298 3.702 9 O -0.394 6.394 10 C 0.007 3.993 11 H 0.064 0.936 12 C -0.179 4.179 13 C -0.568 4.568 14 H 0.064 0.936 15 C -0.178 4.178 16 N -0.548 5.548 17 Si 0.782 3.218 18 H -0.207 1.207 19 H -0.197 1.197 20 H -0.198 1.198 21 N -0.251 5.251 22 H 0.101 0.899 23 H 0.068 0.932 24 H 0.126 0.874 25 H 0.186 0.814 26 H 0.198 0.802 27 H 0.182 0.818 28 H 0.268 0.732 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.046 17.091 -1.447 17.152 hybrid contribution 0.289 -0.549 0.085 0.626 sum 0.242 16.541 -1.362 16.599 Atomic orbital electron populations 1.20765 0.87963 1.03539 1.03453 1.21738 0.98092 0.87932 0.93553 1.22195 0.95647 0.99036 1.05676 1.21842 0.94201 0.98298 0.92308 1.21816 1.02219 0.90972 1.08766 1.19072 0.89169 0.86644 0.94778 1.43899 1.11611 1.03336 1.71966 1.21972 0.88024 0.86411 0.73834 1.90611 1.15928 1.86916 1.45901 1.18851 0.95480 0.87588 0.97381 0.93628 1.21587 0.97982 1.02891 0.95446 1.21277 0.92990 0.91772 1.50810 0.93596 1.25568 0.97328 1.00365 0.94510 1.69940 1.14577 1.19751 1.50580 0.85534 0.79083 0.78989 0.78216 1.20735 1.19709 1.19799 1.67429 1.08962 1.31514 1.17216 0.89899 0.93177 0.87388 0.81439 0.80223 0.81763 0.73226 0.95969 0.92591 0.90689 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.51 10.17 71.24 0.72 -1.79 16 2 C 0.13 3.84 6.78 42.52 0.29 4.13 16 3 C -0.20 -4.36 9.73 22.37 0.22 -4.14 16 4 C -0.04 -0.77 10.17 22.44 0.23 -0.54 16 5 C -0.21 -5.18 9.94 22.49 0.22 -4.96 16 6 C 0.33 11.92 7.42 132.90 0.99 12.91 16 7 N -0.66 -24.81 5.31 -308.47 -1.64 -26.45 16 8 C 0.51 24.96 7.11 87.66 0.62 25.58 16 9 O -0.52 -29.98 13.72 -3.01 -0.04 -30.02 16 10 C 0.03 1.46 2.65 -12.28 -0.03 1.43 16 11 H 0.05 2.40 8.14 -2.39 -0.02 2.39 16 12 C -0.12 -5.55 8.86 71.98 0.64 -4.92 16 13 C -0.53 -31.49 8.37 25.60 0.21 -31.27 16 14 H 0.05 2.95 6.75 -2.91 -0.02 2.93 16 15 C 0.02 1.23 5.30 84.65 0.45 1.68 16 16 N -0.91 -51.26 11.32 21.44 0.24 -51.02 16 17 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 18 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 21 N -0.53 -21.71 7.80 -181.12 -1.41 -23.12 16 22 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.11 1.81 8.08 -2.39 -0.02 1.79 16 25 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 26 H 0.18 1.70 8.06 -2.91 -0.02 1.67 16 27 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 28 H 0.43 12.45 7.98 -92.71 -0.74 11.71 16 29 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.06 2.01 7.46 -2.39 -0.02 1.99 16 31 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 32 H 0.27 14.11 8.31 -92.70 -0.77 13.34 16 Total: -1.00 -76.65 276.91 4.13 -72.52 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.39 Total: 12.23 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 4.56 Total: -1.91 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -2.81 Total: -100.59 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.04 Total: -30.02 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -76.65 4.13 -72.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596818379.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.366 kcal (2) G-P(sol) polarization free energy of solvation -76.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds