Wall clock time and date at job start Mon Mar 30 2020 03:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38841 * 120.74793 * 2 1 4 4 C 1.38077 * 119.30814 * 179.97438 * 3 2 1 5 5 N 1.31930 * 120.84951 * 359.97438 * 4 3 2 6 6 C 1.32354 * 121.63849 * 0.02562 * 5 4 3 7 7 N 1.39401 * 119.69728 * 179.97438 * 6 5 4 8 8 C 1.34779 * 120.00198 * 5.40118 * 7 6 5 9 9 O 1.21279 * 119.99684 * 354.90611 * 8 7 6 10 10 C 1.50695 * 120.00073 * 174.91004 * 8 7 6 11 11 H 1.08998 * 109.47554 * 300.00035 * 10 8 7 12 12 C 1.53005 * 109.47348 * 59.99961 * 10 8 7 13 13 C 1.50696 * 109.47185 * 179.97438 * 10 8 7 14 14 H 1.08005 * 120.00321 * 0.02562 * 13 10 8 15 15 C 1.37877 * 120.00180 * 179.97438 * 13 10 8 16 16 N 1.31512 * 120.00120 * 0.02562 * 15 13 10 17 17 Si 1.86805 * 120.00079 * 180.02562 * 15 13 10 18 18 H 1.48494 * 109.47258 * 60.00202 * 17 15 13 19 19 H 1.48502 * 109.46862 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46996 * 300.00134 * 17 15 13 21 21 C 1.38358 * 120.75820 * 180.23931 * 2 1 3 22 22 H 1.08997 * 109.47399 * 89.99926 * 1 2 3 23 23 H 1.08998 * 109.46442 * 209.99492 * 1 2 3 24 24 H 1.08994 * 109.47038 * 329.99385 * 1 2 3 25 25 H 1.07995 * 120.35036 * 0.02562 * 3 2 1 26 26 H 1.08001 * 119.57689 * 179.97438 * 4 3 2 27 27 H 0.97001 * 120.00095 * 185.40887 * 7 6 5 28 28 H 1.09002 * 109.47226 * 59.99573 * 12 10 8 29 29 H 1.08992 * 109.47372 * 179.97438 * 12 10 8 30 30 H 1.08996 * 109.46971 * 300.00440 * 12 10 8 31 31 H 0.96997 * 120.00489 * 180.02562 * 16 15 13 32 32 H 1.08001 * 120.44682 * 0.03032 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1932 0.0000 4 6 3.5972 1.1585 0.0005 5 7 4.2451 0.0093 0.0016 6 6 3.6044 -1.1489 0.0016 7 7 4.3296 -2.3394 0.0022 8 6 5.6726 -2.3103 0.1125 9 8 6.2577 -1.2480 0.1183 10 6 6.4471 -3.5978 0.2286 11 1 6.1216 -4.1388 1.1171 12 6 6.1968 -4.4573 -1.0122 13 6 7.9184 -3.2908 0.3378 14 1 8.2587 -2.2658 0.3249 15 6 8.8302 -4.3183 0.4553 16 7 8.4160 -5.5664 0.4715 17 14 10.6540 -3.9376 0.5914 18 1 10.8970 -3.1031 1.7953 19 1 11.4172 -5.2064 0.7057 20 1 11.0976 -3.2010 -0.6193 21 6 2.2146 -1.1889 -0.0050 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3632 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6949 2.1387 0.0004 26 1 4.1537 2.0841 0.0001 27 1 3.8678 -3.1887 -0.0770 28 1 6.5223 -3.9163 -1.9007 29 1 6.7573 -5.3883 -0.9284 30 1 5.1326 -4.6793 -1.0916 31 1 9.0574 -6.2893 0.5546 32 1 1.6944 -2.1354 -0.0094 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596818448.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:44 Heat of formation + Delta-G solvation = -21.144784 kcal Electronic energy + Delta-G solvation = -15891.963740 eV Core-core repulsion = 13237.760011 eV Total energy + Delta-G solvation = -2654.203729 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.68855 -40.01694 -35.98778 -35.76398 -34.60135 -32.66172 -30.67566 -28.65940 -27.22841 -25.22507 -24.20131 -22.83403 -20.83834 -18.90230 -18.22915 -17.65615 -16.90306 -16.68004 -16.39210 -16.05868 -15.41409 -15.06770 -14.81881 -14.44897 -13.78017 -13.55636 -13.42150 -13.29448 -12.97995 -12.75970 -12.61886 -12.49593 -12.25588 -12.02153 -11.63422 -11.09331 -10.86910 -10.51465 -10.38144 -9.81792 -9.18800 -8.17106 -6.27584 0.19914 0.42878 1.40459 1.42159 1.50714 1.92784 2.08286 2.44783 2.99788 3.12830 3.56268 3.86841 4.06617 4.19233 4.28398 4.45021 4.70652 4.72993 4.84076 4.87614 4.89641 4.94627 5.00812 5.20954 5.40372 5.45784 5.51636 5.71713 5.86487 5.98847 6.15710 6.43966 6.79137 7.21057 7.38215 7.56148 8.88641 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.053487 B = 0.005542 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.368741 B = 5050.785949 C = 5478.398602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.019 4.019 3 C -0.205 4.205 4 C 0.109 3.891 5 N -0.539 5.539 6 C 0.337 3.663 7 N -0.660 5.660 8 C 0.509 3.491 9 O -0.522 6.522 10 C 0.029 3.971 11 H 0.046 0.954 12 C -0.121 4.121 13 C -0.532 4.532 14 H 0.046 0.954 15 C 0.022 3.978 16 N -0.909 5.909 17 Si 0.956 3.044 18 H -0.277 1.277 19 H -0.272 1.272 20 H -0.277 1.277 21 C -0.211 4.211 22 H 0.090 0.910 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.166 0.834 26 H 0.165 0.835 27 H 0.428 0.572 28 H 0.021 0.979 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.266 0.734 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.992 7.063 -1.486 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.028 4.028 3 C -0.226 4.226 4 C -0.048 4.048 5 N -0.255 5.255 6 C 0.107 3.893 7 N -0.308 5.308 8 C 0.298 3.702 9 O -0.394 6.394 10 C 0.007 3.993 11 H 0.064 0.936 12 C -0.179 4.179 13 C -0.571 4.571 14 H 0.065 0.935 15 C -0.177 4.177 16 N -0.548 5.548 17 Si 0.782 3.218 18 H -0.203 1.203 19 H -0.196 1.196 20 H -0.203 1.203 21 C -0.235 4.235 22 H 0.109 0.891 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.184 0.816 26 H 0.182 0.818 27 H 0.267 0.733 28 H 0.040 0.960 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.494 7.541 -1.447 18.193 hybrid contribution 0.397 -0.321 0.087 0.518 sum -16.097 7.220 -1.360 17.694 Atomic orbital electron populations 1.20880 0.86966 1.04624 1.04041 1.20575 0.98550 0.91500 0.92129 1.22246 0.94389 1.00232 1.05722 1.23024 0.93130 0.94952 0.93675 1.67602 1.42178 0.98636 1.17080 1.19036 0.89310 0.86423 0.94564 1.43895 1.07220 1.07725 1.71939 1.21983 0.81532 0.92880 0.73795 1.90610 1.69103 1.33739 1.45911 1.18844 0.94203 0.88803 0.97404 0.93582 1.21588 0.99554 1.01329 0.95451 1.21224 0.91655 0.93133 1.51061 0.93529 1.25564 1.02876 0.94785 0.94476 1.69922 1.35633 0.98839 1.50401 0.85646 0.80035 0.77618 0.78537 1.20299 1.19641 1.20266 1.21649 0.90866 1.01548 1.09394 0.89140 0.89952 0.89395 0.81600 0.81764 0.73253 0.95959 0.90665 0.92602 0.92454 0.82066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.06 71.24 0.72 -0.48 16 2 C -0.02 -0.39 5.91 -19.69 -0.12 -0.51 16 3 C -0.20 -4.43 9.81 22.38 0.22 -4.21 16 4 C 0.11 3.29 11.17 84.64 0.95 4.24 16 5 N -0.54 -21.82 7.89 -193.04 -1.52 -23.34 16 6 C 0.34 12.07 7.42 132.92 0.99 13.05 16 7 N -0.66 -24.83 5.31 -308.46 -1.64 -26.47 16 8 C 0.51 24.95 7.11 87.66 0.62 25.58 16 9 O -0.52 -29.92 13.73 -3.03 -0.04 -29.96 16 10 C 0.03 1.48 2.65 -12.29 -0.03 1.45 16 11 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 12 C -0.12 -5.55 8.86 71.98 0.64 -4.92 16 13 C -0.53 -31.56 8.37 25.60 0.21 -31.34 16 14 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 15 C 0.02 1.27 5.30 84.65 0.45 1.72 16 16 N -0.91 -51.20 11.32 21.45 0.24 -50.95 16 17 Si 0.96 45.68 29.54 68.60 2.03 47.70 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 21 C -0.21 -5.29 9.64 22.49 0.22 -5.08 16 22 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.08 0.76 8.10 -2.39 -0.02 0.74 16 24 H 0.09 0.71 8.10 -2.39 -0.02 0.69 16 25 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 26 H 0.17 4.20 8.06 -2.91 -0.02 4.18 16 27 H 0.43 12.49 7.98 -92.71 -0.74 11.75 16 28 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 30 H 0.06 2.00 7.46 -2.39 -0.02 1.99 16 31 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -75.52 276.80 4.32 -71.21 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.39 Total: 12.31 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 4.86 Total: -0.50 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -2.92 Total: -100.76 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.04 Total: -29.96 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -75.52 4.32 -71.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596818448.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.062 kcal (2) G-P(sol) polarization free energy of solvation -75.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds