Wall clock time and date at job start Mon Mar 30 2020 03:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38551 * 120.82127 * 2 1 4 4 C 1.38217 * 119.23794 * 179.97438 * 3 2 1 5 5 N 1.31896 * 120.92181 * 0.02562 * 4 3 2 6 6 C 1.31785 * 121.79300 * 359.97438 * 5 4 3 7 7 C 1.38885 * 120.66610 * 0.02562 * 6 5 4 8 8 N 1.39956 * 120.49170 * 180.02562 * 7 6 5 9 9 C 1.34776 * 119.99877 * 24.75534 * 8 7 6 10 10 O 1.21290 * 119.99777 * 5.53908 * 9 8 7 11 11 C 1.50695 * 119.99854 * 185.54772 * 9 8 7 12 12 H 1.09001 * 109.46881 * 299.99535 * 11 9 8 13 13 C 1.53001 * 109.47390 * 59.99670 * 11 9 8 14 14 C 1.50702 * 109.47071 * 179.97438 * 11 9 8 15 15 H 1.07997 * 119.99969 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00156 * 179.97438 * 14 11 9 17 17 N 1.31514 * 120.00419 * 180.02562 * 16 14 11 18 18 Si 1.86805 * 119.99811 * 359.97438 * 16 14 11 19 19 H 1.48499 * 109.46743 * 90.00668 * 18 16 14 20 20 H 1.48500 * 109.47034 * 210.00173 * 18 16 14 21 21 H 1.48499 * 109.47399 * 330.00505 * 18 16 14 22 22 H 1.09004 * 109.46541 * 89.99699 * 1 2 3 23 23 H 1.08998 * 109.47394 * 210.00031 * 1 2 3 24 24 H 1.08999 * 109.46878 * 330.00212 * 1 2 3 25 25 H 1.08000 * 120.37565 * 0.27518 * 3 2 1 26 26 H 1.07996 * 119.54130 * 180.02562 * 4 3 2 27 27 H 1.08006 * 119.66518 * 180.02562 * 6 5 4 28 28 H 0.96993 * 119.99619 * 204.75603 * 8 7 6 29 29 H 1.09005 * 109.46465 * 179.97438 * 13 11 9 30 30 H 1.08994 * 109.46740 * 299.99843 * 13 11 9 31 31 H 1.08992 * 109.46942 * 60.00581 * 13 11 9 32 32 H 0.96997 * 120.00253 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1898 0.0000 4 6 3.5986 1.1516 0.0005 5 7 4.2448 0.0019 0.0005 6 6 3.6086 -1.1522 0.0005 7 6 2.2204 -1.1958 0.0000 8 7 1.5484 -2.4235 0.0005 9 6 2.1545 -3.5232 0.4903 10 8 3.2409 -3.4310 1.0215 11 6 1.4823 -4.8672 0.3776 12 1 0.5254 -4.8397 0.8989 13 6 1.2500 -5.1992 -1.0978 14 6 2.3621 -5.9224 0.9970 15 1 3.3131 -5.6473 1.4286 16 6 1.9530 -7.2389 1.0126 17 7 2.7206 -8.1597 1.5535 18 14 0.3078 -7.7146 0.2666 19 1 0.4931 -8.0485 -1.1684 20 1 -0.2377 -8.8955 0.9831 21 1 -0.6398 -6.5782 0.3921 22 1 -0.3632 0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6966 2.1362 0.0045 26 1 4.1568 2.0761 0.0010 27 1 4.1723 -2.0735 0.0010 28 1 0.6466 -2.4828 -0.3516 29 1 0.7642 -6.1716 -1.1791 30 1 0.6138 -4.4361 -1.5460 31 1 2.2068 -5.2268 -1.6190 32 1 2.4326 -9.0859 1.5648 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597155800.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:48 Heat of formation + Delta-G solvation = 0.815781 kcal Electronic energy + Delta-G solvation = -16170.679765 eV Core-core repulsion = 13517.428317 eV Total energy + Delta-G solvation = -2653.251448 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.67040 -38.78535 -35.06754 -34.03523 -33.15063 -31.44447 -29.66889 -27.72625 -25.25322 -24.17205 -22.58423 -21.69144 -19.72425 -17.51173 -16.96410 -16.35258 -16.17774 -15.54288 -14.78586 -14.54551 -14.06308 -13.81267 -13.31937 -12.97885 -12.94268 -12.76989 -12.68956 -12.40473 -11.78767 -11.74594 -11.16165 -10.73897 -10.62860 -10.34248 -9.73954 -9.40137 -9.28139 -9.21802 -8.91042 -8.66038 -7.94857 -6.12850 -4.14787 1.27153 1.32644 3.16593 3.22624 3.25911 3.30838 3.39229 4.01251 4.29976 4.68470 4.74732 4.79056 5.04524 5.15732 5.30274 5.38419 5.41050 5.54314 5.79483 5.89713 5.98400 6.11784 6.16078 6.28315 6.30857 6.47222 6.59573 7.01787 7.06010 7.39191 7.77178 8.18441 8.42708 8.73557 9.05474 9.44385 10.99791 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.043693 B = 0.006559 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.674767 B = 4267.737782 C = 4716.674328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.154 4.154 4 C 0.062 3.938 5 N -0.468 5.468 6 C 0.090 3.910 7 C 0.115 3.885 8 N -0.679 5.679 9 C 0.526 3.474 10 O -0.503 6.503 11 C -0.001 4.001 12 H 0.056 0.944 13 C -0.147 4.147 14 C -0.511 4.511 15 H 0.095 0.905 16 C 0.073 3.927 17 N -0.892 5.892 18 Si 0.884 3.116 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.267 1.267 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.132 0.868 26 H 0.151 0.849 27 H 0.179 0.821 28 H 0.407 0.593 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.060 0.940 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.421 15.780 -5.866 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.102 4.102 3 C -0.175 4.175 4 C -0.095 4.095 5 N -0.177 5.177 6 C -0.070 4.070 7 C 0.017 3.983 8 N -0.324 5.324 9 C 0.317 3.683 10 O -0.375 6.375 11 C -0.023 4.023 12 H 0.074 0.926 13 C -0.205 4.205 14 C -0.549 4.549 15 H 0.113 0.887 16 C -0.130 4.130 17 N -0.529 5.529 18 Si 0.714 3.286 19 H -0.204 1.204 20 H -0.222 1.222 21 H -0.193 1.193 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.150 0.850 26 H 0.168 0.832 27 H 0.195 0.805 28 H 0.244 0.756 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.698 15.521 -5.415 17.398 hybrid contribution -2.324 -0.370 -0.566 2.420 sum -8.021 15.151 -5.981 18.157 Atomic orbital electron populations 1.20724 0.90319 1.03433 1.02608 1.20054 0.96613 0.91846 1.01662 1.21782 0.95418 0.97689 1.02578 1.22633 0.91680 0.96395 0.98766 1.67764 1.40672 0.98151 1.11130 1.23376 0.90401 0.97178 0.96094 1.18922 0.93415 0.86042 0.99970 1.44055 1.19166 1.06555 1.62667 1.21687 0.85953 0.85566 0.75129 1.90568 1.21022 1.85537 1.40349 1.19335 0.98220 0.89698 0.95000 0.92639 1.22149 1.01112 1.00002 0.97191 1.20892 1.06186 0.89867 1.37989 0.88677 1.24966 0.96727 0.96299 0.94961 1.69870 1.37115 1.01547 1.44365 0.86926 0.84822 0.78014 0.78866 1.20395 1.22154 1.19272 0.90732 0.91208 0.90816 0.85010 0.83167 0.80454 0.75644 0.92904 0.94769 0.92071 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.53 36.01 0.34 -0.70 16 2 C -0.09 -1.16 5.93 -104.13 -0.62 -1.77 16 3 C -0.15 -1.78 9.81 -39.47 -0.39 -2.16 16 4 C 0.06 0.82 11.17 -17.53 -0.20 0.62 16 5 N -0.47 -7.89 10.35 -13.09 -0.14 -8.02 16 6 C 0.09 1.62 9.90 -17.33 -0.17 1.45 16 7 C 0.12 1.85 6.44 -83.54 -0.54 1.31 16 8 N -0.68 -10.91 4.87 -9.77 -0.05 -10.96 16 9 C 0.53 10.97 6.96 -10.99 -0.08 10.89 16 10 O -0.50 -12.29 12.65 5.55 0.07 -12.22 16 11 C 0.00 -0.02 2.23 -92.92 -0.21 -0.23 16 12 H 0.06 1.18 7.20 -51.93 -0.37 0.80 16 13 C -0.15 -2.85 8.58 37.16 0.32 -2.53 16 14 C -0.51 -14.27 8.95 -34.44 -0.31 -14.57 16 15 H 0.10 3.03 7.00 -52.49 -0.37 2.66 16 16 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 17 N -0.89 -26.97 13.96 55.43 0.77 -26.20 16 18 Si 0.88 20.56 24.38 -169.99 -4.14 16.42 16 19 H -0.28 -6.24 6.87 56.52 0.39 -5.85 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.27 -5.72 6.53 56.52 0.37 -5.35 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.65 7.10 -51.93 -0.37 0.28 16 24 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 25 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 26 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.18 3.62 5.80 -52.48 -0.30 3.31 16 28 H 0.41 5.18 7.13 -40.82 -0.29 4.89 16 29 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 30 H 0.03 0.51 7.70 -51.93 -0.40 0.11 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 265.68 15.07 4.00 4.00 Total: -1.00 -32.61 265.68 -4.98 -37.60 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -3.57 Total: 5.14 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -1.94 Total: -5.75 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.59 Total: -45.18 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.07 Total: -12.22 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.14 Total: 16.42 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.61 -4.98 -37.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597155800.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.412 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds